Wall clock time and date at job start Mon Mar 8 2021 09:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00893 * 1 3 3 H 1.00896 * 109.47279 * 1 2 4 4 H 1.00905 * 109.47296 * 240.00311 * 1 2 3 5 5 C 1.46902 * 109.47905 * 120.00395 * 1 2 3 6 6 H 1.08993 * 112.85357 * 191.19364 * 5 1 2 7 7 C 1.53788 * 113.68456 * 322.46392 * 5 1 2 8 8 C 1.53788 * 87.08019 * 89.12779 * 7 5 1 9 9 H 1.09000 * 113.68445 * 270.86897 * 8 7 5 10 10 C 1.50691 * 113.61372 * 139.97953 * 8 7 5 11 11 C 1.38000 * 119.93937 * 142.50034 * 10 8 7 12 12 C 1.39357 * 119.87700 * 180.02562 * 11 10 8 13 13 C 1.48399 * 120.11986 * 179.97438 * 12 11 10 14 14 C 1.39307 * 120.53192 * 0.02562 * 13 12 11 15 15 N 1.31749 * 120.59247 * 179.97438 * 14 13 12 16 16 C 1.31886 * 121.85165 * 359.75947 * 15 14 13 17 17 C 1.38313 * 121.03077 * 0.53157 * 16 15 14 18 18 C 1.50696 * 120.36240 * 179.72417 * 17 16 15 19 19 O 1.42903 * 109.47131 * 119.72310 * 18 17 16 20 20 Si 1.86305 * 109.47185 * 359.72851 * 18 17 16 21 21 C 1.38412 * 119.28047 * 359.45630 * 17 16 15 22 22 C 1.39316 * 119.76052 * 0.25179 * 12 11 10 23 23 C 1.38033 * 119.87486 * 359.51621 * 22 12 11 24 24 C 1.38299 * 120.12302 * 0.46275 * 23 22 12 25 25 C 1.53782 * 113.61345 * 59.99811 * 5 1 2 26 26 H 1.08994 * 113.61544 * 334.57920 * 7 5 1 27 27 H 1.08995 * 113.61126 * 203.67177 * 7 5 1 28 28 H 1.07997 * 120.06203 * 359.97438 * 11 10 8 29 29 H 1.07996 * 119.70377 * 359.97438 * 14 13 12 30 30 H 1.08000 * 119.48696 * 180.26593 * 16 15 14 31 31 H 1.08999 * 109.47358 * 239.72670 * 18 17 16 32 32 H 0.96700 * 114.00311 * 300.00591 * 19 18 17 33 33 H 1.48497 * 110.00233 * 179.97438 * 20 18 17 34 34 H 1.48492 * 109.99800 * 301.31995 * 20 18 17 35 35 H 1.07995 * 120.84571 * 180.29628 * 21 17 16 36 36 H 1.08000 * 120.05990 * 179.72993 * 22 12 11 37 37 H 1.08002 * 119.93997 * 180.20872 * 23 22 12 38 38 H 1.08001 * 119.88193 * 179.76433 * 24 23 22 39 39 H 1.08996 * 113.61599 * 156.25886 * 25 5 1 40 40 H 1.08997 * 113.61385 * 25.34842 * 25 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0089 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3364 -0.4756 0.8239 5 6 -0.4899 -0.6926 -1.1993 6 1 -1.5599 -0.5590 -1.3579 7 6 0.3570 -0.4270 -2.4553 8 6 1.2101 -1.6373 -2.0401 9 1 2.0399 -1.3825 -1.3808 10 6 1.6279 -2.5069 -3.1977 11 6 2.8824 -3.0818 -3.2095 12 6 3.2677 -3.8853 -4.2810 13 6 4.6156 -4.5058 -4.2995 14 6 5.5070 -4.2933 -3.2503 15 7 6.7038 -4.8440 -3.2653 16 6 7.1032 -5.6140 -4.2588 17 6 6.2787 -5.8682 -5.3398 18 6 6.7527 -6.7453 -6.4698 19 8 5.8879 -7.8766 -6.5897 20 14 8.4884 -7.3250 -6.1198 21 6 5.0113 -5.3127 -5.3699 22 6 2.3849 -4.0993 -5.3373 23 6 1.1308 -3.5232 -5.3128 24 6 0.7535 -2.7270 -4.2468 25 6 -0.0310 -2.1572 -1.2955 26 1 0.8975 0.5191 -2.4254 27 1 -0.1869 -0.5756 -3.3880 28 1 3.5646 -2.9087 -2.3904 29 1 5.2144 -3.6716 -2.4171 30 1 8.0911 -6.0495 -4.2298 31 1 6.7399 -6.1779 -7.4003 32 1 5.8500 -8.4286 -5.7966 33 1 8.9674 -8.1915 -7.2266 34 1 9.3916 -6.1570 -5.9613 35 1 4.3449 -5.4983 -6.1992 36 1 2.6801 -4.7176 -6.1722 37 1 0.4444 -3.6911 -6.1296 38 1 -0.2273 -2.2751 -4.2335 39 1 -0.6810 -2.7788 -1.9113 40 1 0.1963 -2.6078 -0.3295 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081518_14315888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:49 Heat of formation + Delta-G solvation = 142.557455 kcal Electronic energy + Delta-G solvation = -21390.941676 eV Core-core repulsion = 18255.390740 eV Total energy + Delta-G solvation = -3135.550936 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.01933 -41.54361 -39.73350 -37.97625 -36.05009 -34.23680 -33.62423 -31.98633 -30.29969 -27.43816 -26.93784 -26.30462 -25.12820 -24.23250 -22.46223 -22.11345 -20.22810 -19.22029 -18.74652 -18.49394 -18.18020 -17.55847 -17.38826 -16.86721 -16.62634 -16.29478 -16.01230 -15.63415 -15.09250 -14.98761 -14.76946 -14.70979 -14.40442 -14.19630 -14.08222 -13.53610 -13.28402 -13.09302 -12.82313 -12.74495 -12.42521 -12.20610 -11.83321 -11.71910 -11.42329 -11.23293 -10.76644 -10.56854 -10.41500 -9.75853 -9.20675 -5.10225 -0.58615 0.01403 0.34551 0.73217 1.17847 1.53131 1.60141 1.88772 2.45732 2.81033 2.95025 3.10184 3.13854 3.39020 3.42632 3.49617 3.62453 3.72220 3.76318 3.78801 3.80382 3.91457 4.05651 4.14357 4.19730 4.26814 4.30940 4.35208 4.47184 4.53782 4.58163 4.59554 4.71841 4.82501 4.88318 4.90391 4.96368 4.99498 5.03403 5.07675 5.22771 5.41229 5.50256 5.56126 5.58023 5.96898 6.61869 6.77752 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.033672 B = 0.003560 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.354021 B = 7864.006959 C = 8483.739581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 H 0.441 0.559 3 H 0.453 0.547 4 H 0.452 0.548 5 C 0.030 3.970 6 H 0.167 0.833 7 C -0.145 4.145 8 C -0.094 4.094 9 H 0.136 0.864 10 C -0.073 4.073 11 C -0.108 4.108 12 C -0.059 4.059 13 C -0.099 4.099 14 C 0.108 3.892 15 N -0.496 5.496 16 C 0.092 3.908 17 C -0.167 4.167 18 C -0.064 4.064 19 O -0.552 6.552 20 Si 0.767 3.233 21 C -0.056 4.056 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.112 4.112 25 C -0.141 4.141 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.148 0.852 29 H 0.188 0.812 30 H 0.168 0.832 31 H 0.112 0.888 32 H 0.396 0.604 33 H -0.299 1.299 34 H -0.283 1.283 35 H 0.141 0.859 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.151 0.849 39 H 0.099 0.901 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.991 19.939 21.784 36.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.010 5.010 2 H 0.271 0.729 3 H 0.285 0.715 4 H 0.284 0.716 5 C -0.076 4.076 6 H 0.184 0.816 7 C -0.183 4.183 8 C -0.111 4.111 9 H 0.154 0.846 10 C -0.073 4.073 11 C -0.126 4.126 12 C -0.060 4.060 13 C -0.101 4.101 14 C -0.049 4.049 15 N -0.203 5.203 16 C -0.064 4.064 17 C -0.169 4.169 18 C -0.175 4.175 19 O -0.360 6.360 20 Si 0.674 3.326 21 C -0.081 4.081 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.130 4.130 25 C -0.178 4.178 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.166 0.834 29 H 0.205 0.795 30 H 0.184 0.816 31 H 0.130 0.870 32 H 0.246 0.754 33 H -0.227 1.227 34 H -0.210 1.210 35 H 0.158 0.842 36 H 0.132 0.868 37 H 0.146 0.854 38 H 0.169 0.831 39 H 0.117 0.883 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.774 20.199 21.422 35.467 hybrid contribution -0.304 -0.282 -1.783 1.830 sum -20.077 19.917 19.639 34.431 Atomic orbital electron populations 1.41974 1.21681 1.21067 1.16292 0.72900 0.71454 0.71599 1.23681 1.03791 0.94641 0.85482 0.81571 1.23620 0.97209 0.99397 0.98041 1.22121 0.99126 0.95043 0.94856 0.84597 1.19810 0.92700 0.98169 0.96634 1.21410 0.97354 0.96376 0.97447 1.18699 0.91599 0.99183 0.96535 1.20024 0.95481 0.98744 0.95820 1.23376 0.87854 0.96220 0.97497 1.67691 1.17396 1.08619 1.26592 1.22894 0.99719 0.94748 0.89041 1.21344 0.96080 1.01270 0.98190 1.24988 1.05793 0.88403 0.98312 1.86490 1.67743 1.38194 1.43588 0.93798 0.72138 0.80736 0.85958 1.21709 0.95273 0.93161 0.97957 1.21406 0.94781 1.00416 0.98297 1.21356 0.95804 0.97772 0.99922 1.21405 1.00729 0.97709 0.93119 1.23553 0.96090 0.94748 1.03434 0.87238 0.87879 0.83398 0.79486 0.81567 0.87033 0.75364 1.22656 1.20961 0.84173 0.86832 0.85396 0.83120 0.88292 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 47.20 4.51 -166.49 -0.75 46.45 16 2 H 0.44 -34.98 8.01 -89.70 -0.72 -35.70 16 3 H 0.45 -36.94 9.02 -89.70 -0.81 -37.75 16 4 H 0.45 -36.65 9.02 -89.69 -0.81 -37.46 16 5 C 0.03 -2.00 4.96 45.44 0.23 -1.77 16 6 H 0.17 -11.11 8.14 -2.39 -0.02 -11.13 16 7 C -0.15 8.09 7.12 31.12 0.22 8.31 16 8 C -0.09 4.75 3.63 -11.01 -0.04 4.71 16 9 H 0.14 -7.68 7.66 -2.39 -0.02 -7.69 16 10 C -0.07 2.64 5.28 -19.90 -0.11 2.53 16 11 C -0.11 3.23 9.10 22.48 0.20 3.43 16 12 C -0.06 1.28 5.88 -20.04 -0.12 1.16 16 13 C -0.10 1.75 5.89 -19.94 -0.12 1.63 16 14 C 0.11 -1.97 10.60 84.96 0.90 -1.06 16 15 N -0.50 6.40 10.35 -194.95 -2.02 4.39 16 16 C 0.09 -1.26 9.84 84.70 0.83 -0.43 16 17 C -0.17 2.40 5.39 -19.81 -0.11 2.30 16 18 C -0.06 0.92 2.83 71.23 0.20 1.12 16 19 O -0.55 7.56 12.78 -148.98 -1.90 5.65 16 20 Si 0.77 -11.14 29.82 68.60 2.05 -9.09 16 21 C -0.06 0.83 9.13 22.68 0.21 1.04 16 22 C -0.13 2.63 9.44 22.48 0.21 2.84 16 23 C -0.13 3.16 10.03 22.24 0.22 3.38 16 24 C -0.11 3.59 8.60 22.31 0.19 3.78 16 25 C -0.14 7.82 7.34 31.12 0.23 8.05 16 26 H 0.11 -6.34 8.14 -2.39 -0.02 -6.36 16 27 H 0.10 -5.14 6.30 -2.39 -0.02 -5.16 16 28 H 0.15 -5.19 6.23 -2.91 -0.02 -5.21 16 29 H 0.19 -4.92 6.23 -2.91 -0.02 -4.94 16 30 H 0.17 -2.80 4.88 -2.91 -0.01 -2.81 16 31 H 0.11 -1.50 7.96 -2.39 -0.02 -1.52 16 32 H 0.40 -8.51 8.70 -74.06 -0.64 -9.16 16 33 H -0.30 1.79 7.11 99.48 0.71 2.50 16 34 H -0.28 2.75 7.11 99.48 0.71 3.46 16 35 H 0.14 -2.20 6.33 -2.91 -0.02 -2.21 16 36 H 0.11 -2.11 6.28 -2.91 -0.02 -2.13 16 37 H 0.13 -3.20 8.06 -2.91 -0.02 -3.22 16 38 H 0.15 -5.77 6.65 -2.91 -0.02 -5.79 16 39 H 0.10 -4.85 7.72 -2.39 -0.02 -4.87 16 40 H 0.11 -6.41 8.14 -2.39 -0.02 -6.42 16 Total: 1.00 -93.86 320.21 -1.29 -95.15 By element: Atomic # 1 Polarization: -181.74 SS G_CDS: -1.83 Total: -183.56 kcal Atomic # 6 Polarization: 37.86 SS G_CDS: 3.16 Total: 41.02 kcal Atomic # 7 Polarization: 53.60 SS G_CDS: -2.77 Total: 50.83 kcal Atomic # 8 Polarization: 7.56 SS G_CDS: -1.90 Total: 5.65 kcal Atomic # 14 Polarization: -11.14 SS G_CDS: 2.05 Total: -9.09 kcal Total: -93.86 -1.29 -95.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081518_14315888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.706 kcal (2) G-P(sol) polarization free energy of solvation -93.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds