Wall clock time and date at job start Mon Mar 8 2021 09:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00901 * 1 3 3 H 1.00906 * 109.47114 * 1 2 4 4 H 1.00902 * 109.47309 * 240.00643 * 1 2 3 5 5 C 1.46901 * 109.47628 * 120.00217 * 1 2 3 6 6 H 1.09001 * 109.46874 * 300.00124 * 5 1 2 7 7 C 1.53000 * 109.46769 * 59.99844 * 5 1 2 8 8 C 1.52997 * 109.47060 * 180.02562 * 7 5 1 9 9 C 1.53006 * 109.47127 * 300.00449 * 8 7 5 10 10 H 1.09001 * 109.47002 * 299.99574 * 9 8 7 11 11 N 1.46504 * 109.46883 * 180.02562 * 9 8 7 12 12 C 1.38552 * 120.00180 * 84.99850 * 11 9 8 13 13 C 1.39703 * 120.48394 * 359.72133 * 12 11 9 14 14 C 1.38213 * 118.49742 * 179.80189 * 13 12 11 15 15 N 1.32398 * 119.29463 * 0.47138 * 14 13 12 16 16 C 1.32589 * 120.93124 * 359.74309 * 15 14 13 17 17 C 1.48313 * 119.18545 * 179.97438 * 16 15 14 18 18 C 1.39326 * 120.54438 * 180.02562 * 17 16 15 19 19 N 1.31735 * 120.59675 * 179.97438 * 18 17 16 20 20 C 1.31894 * 121.85283 * 0.02562 * 19 18 17 21 21 C 1.38323 * 121.03960 * 359.97438 * 20 19 18 22 22 C 1.50698 * 120.35559 * 180.02562 * 21 20 19 23 23 O 1.42900 * 109.47109 * 244.99412 * 22 21 20 24 24 Si 1.86302 * 109.47565 * 4.99702 * 22 21 20 25 25 C 1.38400 * 119.28335 * 359.78039 * 21 20 19 26 26 N 1.32565 * 121.63339 * 0.02819 * 16 15 14 27 27 C 1.52997 * 109.47164 * 59.99836 * 9 8 7 28 28 C 1.52996 * 109.47195 * 179.97438 * 5 1 2 29 29 H 1.09002 * 109.47398 * 300.00295 * 7 5 1 30 30 H 1.09001 * 109.47194 * 60.00475 * 7 5 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 8 7 5 32 32 H 1.08996 * 109.47853 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99624 * 264.99510 * 11 9 8 34 34 H 1.07998 * 120.75283 * 0.02562 * 13 12 11 35 35 H 1.07999 * 120.35616 * 180.19193 * 14 13 12 36 36 H 1.08006 * 119.69982 * 0.02562 * 18 17 16 37 37 H 1.08003 * 119.47607 * 179.97438 * 20 19 18 38 38 H 1.09006 * 109.46876 * 124.99555 * 22 21 20 39 39 H 0.96699 * 113.99334 * 59.99981 * 23 22 21 40 40 H 1.48494 * 110.00167 * 179.97438 * 24 22 21 41 41 H 1.48496 * 109.99828 * 301.32177 * 24 22 21 42 42 H 1.07996 * 120.84907 * 180.23126 * 25 21 20 43 43 H 1.09002 * 109.47045 * 180.02562 * 27 9 8 44 44 H 1.09001 * 109.47375 * 59.99966 * 27 9 8 45 45 H 1.08992 * 109.47554 * 299.99900 * 28 5 1 46 46 H 1.09004 * 109.47108 * 60.00150 * 28 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9514 0.0000 4 1 -0.3364 -0.4756 0.8239 5 6 -0.4898 -0.6925 -1.1994 6 1 -0.1265 -0.1787 -2.0894 7 6 0.0202 -2.1350 -1.1993 8 6 -0.4893 -2.8562 -2.4488 9 6 -2.0194 -2.8561 -2.4493 10 1 -2.3831 -3.3700 -1.5595 11 7 -2.5073 -3.5471 -3.6455 12 6 -2.6396 -4.9263 -3.6432 13 6 -2.3053 -5.6685 -2.5078 14 6 -2.4572 -7.0416 -2.5493 15 7 -2.9028 -7.6109 -3.6584 16 6 -3.2084 -6.8823 -4.7232 17 6 -3.7038 -7.5603 -5.9457 18 6 -4.0327 -6.8223 -7.0807 19 7 -4.4723 -7.4236 -8.1673 20 6 -4.6188 -8.7330 -8.2274 21 6 -4.3138 -9.5353 -7.1427 22 6 -4.4865 -11.0299 -7.2284 23 8 -5.5045 -11.4449 -6.3155 24 14 -4.9786 -11.4998 -8.9627 25 6 -3.8434 -8.9511 -5.9795 26 7 -3.0812 -5.5627 -4.7225 27 6 -2.5293 -1.4136 -2.4494 28 6 -2.0198 -0.6930 -1.1990 29 1 1.1102 -2.1351 -1.1993 30 1 -0.3431 -2.6488 -0.3093 31 1 -0.1257 -2.3423 -3.3386 32 1 -0.1265 -3.8839 -2.4486 33 1 -2.7377 -3.0391 -4.4390 34 1 -1.9399 -5.1800 -1.6166 35 1 -2.2107 -7.6443 -1.6876 36 1 -3.9255 -5.7477 -7.0699 37 1 -4.9827 -9.1858 -9.1378 38 1 -3.5469 -11.5195 -6.9721 39 1 -6.3698 -11.0475 -6.4841 40 1 -5.1514 -12.9714 -9.0606 41 1 -6.2415 -10.8136 -9.3359 42 1 -3.5940 -9.5537 -5.1188 43 1 -3.6193 -1.4135 -2.4494 44 1 -2.1656 -0.8996 -3.3392 45 1 -2.3827 -1.2070 -0.3090 46 1 -2.3834 0.3346 -1.1988 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081518_17085348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:48:24 Heat of formation + Delta-G solvation = 139.776407 kcal Electronic energy + Delta-G solvation = -27316.385714 eV Core-core repulsion = 23517.823593 eV Total energy + Delta-G solvation = -3798.562121 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.172 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.26011 -41.37581 -40.94814 -38.38554 -38.05983 -35.69205 -34.67850 -33.80239 -32.96279 -32.04970 -31.08574 -29.04037 -27.30873 -26.21870 -25.15466 -24.11477 -23.88596 -23.18489 -22.23062 -21.41398 -19.32973 -19.07999 -18.52042 -18.29797 -18.14787 -17.97837 -17.54037 -17.27251 -16.67429 -16.47996 -16.36822 -16.20081 -16.11930 -15.45243 -15.36981 -14.97968 -14.72540 -14.58954 -14.38314 -14.19064 -14.13039 -13.86489 -13.41184 -13.32725 -12.86623 -12.74992 -12.70665 -12.36595 -12.24436 -12.12141 -11.81945 -11.68974 -11.51047 -11.38921 -10.85301 -10.67005 -10.63276 -10.29437 -10.03266 -9.19726 -4.96361 -0.80217 0.00068 0.30230 0.50404 1.22143 1.55215 1.55754 1.84960 1.93493 2.43964 2.69111 2.95491 3.11366 3.20156 3.25309 3.28813 3.36142 3.59065 3.59525 3.64108 3.71868 3.80859 3.81754 3.86172 3.94347 4.08276 4.10856 4.13146 4.23933 4.33303 4.36453 4.39937 4.47667 4.52019 4.58281 4.61698 4.63021 4.69463 4.84948 4.94404 5.00785 5.03623 5.05346 5.09030 5.12502 5.22760 5.32320 5.40333 5.72191 6.11348 6.39736 6.48514 6.72490 7.13528 Molecular weight = 329.17amu Principal moments of inertia in cm(-1) A = 0.033577 B = 0.002253 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.710875 B =12427.172554 C =12902.152028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.450 0.550 3 H 0.450 0.550 4 H 0.444 0.556 5 C 0.050 3.950 6 H 0.149 0.851 7 C -0.137 4.137 8 C -0.138 4.138 9 C 0.141 3.859 10 H 0.095 0.905 11 N -0.704 5.704 12 C 0.429 3.571 13 C -0.280 4.280 14 C 0.163 3.837 15 N -0.577 5.577 16 C 0.391 3.609 17 C -0.109 4.109 18 C 0.149 3.851 19 N -0.501 5.501 20 C 0.116 3.884 21 C -0.174 4.174 22 C -0.072 4.072 23 O -0.545 6.545 24 Si 0.763 3.237 25 C -0.004 4.004 26 N -0.591 5.591 27 C -0.127 4.127 28 C -0.135 4.135 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.409 0.591 34 H 0.181 0.819 35 H 0.194 0.806 36 H 0.176 0.824 37 H 0.176 0.824 38 H 0.133 0.867 39 H 0.387 0.613 40 H -0.299 1.299 41 H -0.277 1.277 42 H 0.149 0.851 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.102 0.898 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.466 33.525 25.010 45.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.281 0.719 3 H 0.282 0.718 4 H 0.274 0.726 5 C -0.056 4.056 6 H 0.166 0.834 7 C -0.175 4.175 8 C -0.177 4.177 9 C 0.037 3.963 10 H 0.112 0.888 11 N -0.336 5.336 12 C 0.184 3.816 13 C -0.308 4.308 14 C 0.002 3.998 15 N -0.297 5.297 16 C 0.124 3.876 17 C -0.113 4.113 18 C -0.010 4.010 19 N -0.209 5.209 20 C -0.041 4.041 21 C -0.176 4.176 22 C -0.182 4.182 23 O -0.353 6.353 24 Si 0.667 3.333 25 C -0.031 4.031 26 N -0.315 5.315 27 C -0.166 4.166 28 C -0.173 4.173 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.245 0.755 34 H 0.198 0.802 35 H 0.211 0.789 36 H 0.193 0.807 37 H 0.193 0.807 38 H 0.150 0.850 39 H 0.236 0.764 40 H -0.227 1.227 41 H -0.203 1.203 42 H 0.167 0.833 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.120 0.880 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 16.829 32.894 23.249 43.654 hybrid contribution -0.764 -0.137 1.635 1.810 sum 16.066 32.757 24.884 44.162 Atomic orbital electron populations 1.42245 1.22108 1.20955 1.16728 0.71868 0.71825 0.72585 1.22866 0.96790 0.95907 0.90064 0.83366 1.21972 1.03508 0.92765 0.99245 1.21971 0.94133 1.01876 0.99767 1.21515 0.94279 0.93638 0.86890 0.88751 1.44765 1.69786 1.00832 1.18192 1.18767 0.86971 0.87200 0.88648 1.22490 1.11789 0.95585 1.00895 1.23498 0.88082 0.93281 0.94901 1.68329 1.18370 1.41475 1.01477 1.20566 0.90527 0.85172 0.91376 1.19270 1.05038 0.93847 0.93178 1.23167 0.90182 1.01299 0.86373 1.67847 1.13959 1.11750 1.27346 1.23170 0.93580 0.89254 0.98080 1.21320 1.02995 0.98191 0.95119 1.25110 0.95932 0.90864 1.06278 1.86606 1.22346 1.71432 1.54879 0.94098 0.85316 0.77589 0.76247 1.21676 0.90599 0.93191 0.97682 1.67714 1.23442 1.10355 1.30022 1.21725 1.01824 0.92704 1.00369 1.21965 0.92099 1.04181 0.99051 0.87646 0.87821 0.91009 0.92273 0.75513 0.80191 0.78943 0.80735 0.80745 0.84968 0.76392 1.22658 1.20317 0.83324 0.91415 0.90067 0.87984 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 49.30 4.15 -168.68 -0.70 48.60 16 2 H 0.45 -37.18 8.96 -89.69 -0.80 -37.98 16 3 H 0.45 -37.30 8.96 -89.69 -0.80 -38.11 16 4 H 0.44 -36.43 8.90 -89.69 -0.80 -37.23 16 5 C 0.05 -3.35 3.02 44.91 0.14 -3.21 16 6 H 0.15 -9.97 8.14 -2.39 -0.02 -9.99 16 7 C -0.14 8.06 5.43 30.59 0.17 8.23 16 8 C -0.14 6.27 5.45 30.60 0.17 6.44 16 9 C 0.14 -5.89 2.15 44.99 0.10 -5.79 16 10 H 0.09 -4.03 6.52 -2.39 -0.02 -4.05 16 11 N -0.70 21.31 5.23 -324.09 -1.69 19.62 16 12 C 0.43 -9.08 7.69 133.22 1.02 -8.05 16 13 C -0.28 6.89 8.91 22.62 0.20 7.09 16 14 C 0.16 -3.07 11.28 84.60 0.95 -2.11 16 15 N -0.58 6.07 9.52 -189.42 -1.80 4.27 16 16 C 0.39 -3.63 7.56 137.55 1.04 -2.59 16 17 C -0.11 0.87 5.89 -19.95 -0.12 0.76 16 18 C 0.15 -1.20 10.73 84.97 0.91 -0.29 16 19 N -0.50 3.22 10.35 -194.92 -2.02 1.21 16 20 C 0.12 -1.11 9.84 84.70 0.83 -0.28 16 21 C -0.17 1.81 5.35 -19.81 -0.11 1.70 16 22 C -0.07 0.86 2.82 71.24 0.20 1.06 16 23 O -0.54 4.62 12.84 -148.98 -1.91 2.71 16 24 Si 0.76 -9.66 29.91 68.60 2.05 -7.61 16 25 C 0.00 0.04 9.35 22.69 0.21 0.25 16 26 N -0.59 7.71 9.51 -186.75 -1.78 5.93 16 27 C -0.13 5.99 5.40 30.61 0.17 6.16 16 28 C -0.13 8.03 5.43 30.61 0.17 8.20 16 29 H 0.11 -6.33 8.14 -2.39 -0.02 -6.35 16 30 H 0.10 -6.30 8.14 -2.39 -0.02 -6.31 16 31 H 0.07 -3.08 8.14 -2.39 -0.02 -3.10 16 32 H 0.06 -2.27 7.71 -2.39 -0.02 -2.29 16 33 H 0.41 -11.96 8.73 -92.71 -0.81 -12.77 16 34 H 0.18 -6.16 6.26 -2.91 -0.02 -6.18 16 35 H 0.19 -4.85 8.06 -2.91 -0.02 -4.87 16 36 H 0.18 -1.87 7.52 -2.91 -0.02 -1.89 16 37 H 0.18 -2.39 4.85 -2.91 -0.01 -2.41 16 38 H 0.13 -1.84 7.96 -2.38 -0.02 -1.86 16 39 H 0.39 -5.36 8.70 -74.06 -0.64 -6.01 16 40 H -0.30 1.34 7.11 99.48 0.71 2.04 16 41 H -0.28 2.53 7.01 99.48 0.70 3.23 16 42 H 0.15 -1.23 7.60 -2.91 -0.02 -1.25 16 43 H 0.07 -2.76 8.14 -2.39 -0.02 -2.78 16 44 H 0.08 -3.73 8.14 -2.39 -0.02 -3.75 16 45 H 0.10 -6.19 8.14 -2.39 -0.02 -6.21 16 46 H 0.11 -6.76 8.14 -2.38 -0.02 -6.78 16 Total: 1.00 -100.05 367.81 -4.57 -104.62 By element: Atomic # 1 Polarization: -194.12 SS G_CDS: -2.76 Total: -196.88 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 6.05 Total: 17.55 kcal Atomic # 7 Polarization: 87.61 SS G_CDS: -7.99 Total: 79.62 kcal Atomic # 8 Polarization: 4.62 SS G_CDS: -1.91 Total: 2.71 kcal Atomic # 14 Polarization: -9.66 SS G_CDS: 2.05 Total: -7.61 kcal Total: -100.05 -4.57 -104.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081518_17085348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.392 kcal (2) G-P(sol) polarization free energy of solvation -100.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds