Wall clock time and date at job start Mon Mar 8 2021 09:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00897 * 1 3 3 H 1.00902 * 109.46773 * 1 2 4 4 H 1.00900 * 109.47261 * 240.00883 * 1 2 3 5 5 C 1.46895 * 109.47360 * 120.00337 * 1 2 3 6 6 H 1.09001 * 109.47321 * 180.02562 * 5 1 2 7 7 C 1.53009 * 109.47186 * 299.99796 * 5 1 2 8 8 C 1.52995 * 109.46940 * 179.97438 * 7 5 1 9 9 C 1.52994 * 109.47570 * 299.99944 * 8 7 5 10 10 H 1.09001 * 109.47216 * 300.00603 * 9 8 7 11 11 N 1.46495 * 109.47443 * 180.02562 * 9 8 7 12 12 C 1.38411 * 119.99888 * 85.00076 * 11 9 8 13 13 N 1.32350 * 119.15351 * 180.02562 * 12 11 9 14 14 C 1.33123 * 120.61053 * 179.97438 * 13 12 11 15 15 C 1.48309 * 120.50560 * 179.97438 * 14 13 12 16 16 C 1.39336 * 120.53864 * 185.02295 * 15 14 13 17 17 N 1.31743 * 120.59450 * 179.97438 * 16 15 14 18 18 C 1.31898 * 121.85102 * 0.02967 * 17 16 15 19 19 C 1.38324 * 121.04181 * 359.97438 * 18 17 16 20 20 C 1.50693 * 120.35598 * 180.02562 * 19 18 17 21 21 O 1.42904 * 109.46882 * 120.00333 * 20 19 18 22 22 Si 1.86301 * 109.47632 * 0.02562 * 20 19 18 23 23 C 1.38401 * 119.28056 * 359.72404 * 19 18 17 24 24 C 1.39711 * 118.98577 * 0.02562 * 14 13 12 25 25 C 1.38375 * 118.44758 * 359.97438 * 24 14 13 26 26 N 1.32343 * 119.28750 * 0.02562 * 25 24 14 27 27 C 1.53009 * 109.46943 * 60.00059 * 9 8 7 28 28 C 1.52994 * 109.47347 * 59.99754 * 5 1 2 29 29 H 1.08995 * 109.46962 * 300.00287 * 7 5 1 30 30 H 1.09001 * 109.46720 * 59.99964 * 7 5 1 31 31 H 1.09006 * 109.46547 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47344 * 60.00468 * 8 7 5 33 33 H 0.97002 * 120.00235 * 265.00509 * 11 9 8 34 34 H 1.07997 * 119.70928 * 359.97438 * 16 15 14 35 35 H 1.08007 * 119.47762 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47200 * 239.99806 * 20 19 18 37 37 H 0.96705 * 113.99822 * 299.99537 * 21 20 19 38 38 H 1.48497 * 109.99976 * 58.67389 * 22 20 19 39 39 H 1.48496 * 110.00320 * 180.02562 * 22 20 19 40 40 H 1.08005 * 120.84083 * 180.27071 * 23 19 18 41 41 H 1.08002 * 120.77198 * 180.27015 * 24 14 13 42 42 H 1.07998 * 120.35318 * 179.97438 * 25 24 14 43 43 H 1.09001 * 109.46720 * 60.00241 * 27 9 8 44 44 H 1.08995 * 109.46962 * 179.97438 * 27 9 8 45 45 H 1.09002 * 109.46750 * 60.00402 * 28 5 1 46 46 H 1.09001 * 109.47216 * 300.00439 * 28 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3364 -0.4755 0.8239 5 6 -0.4897 -0.6925 -1.1993 6 1 -1.5797 -0.6921 -1.1996 7 6 0.0202 0.0287 -2.4487 8 6 -0.4893 -0.6930 -3.6978 9 6 0.0212 -2.1353 -3.6975 10 1 1.1112 -2.1349 -3.6973 11 7 -0.4662 -2.8261 -4.8939 12 6 0.2295 -2.7204 -6.0858 13 7 -0.2262 -3.3511 -7.1564 14 6 0.4196 -3.2689 -8.3176 15 6 -0.0928 -3.9771 -9.5157 16 6 0.6359 -3.9778 -10.7034 17 7 0.1820 -4.6069 -11.7682 18 6 -0.9670 -5.2545 -11.7570 19 6 -1.7488 -5.3004 -10.6168 20 6 -3.0587 -6.0454 -10.6211 21 8 -3.0199 -7.0827 -9.6389 22 14 -3.3420 -6.7941 -12.3033 23 6 -1.3119 -4.6600 -9.4702 24 6 1.5879 -2.5063 -8.3900 25 6 2.0278 -1.8640 -7.2461 26 7 1.3348 -1.9902 -6.1256 27 6 -0.4888 -2.8565 -2.4481 28 6 0.0203 -2.1350 -1.1993 29 1 -0.3431 1.0563 -2.4487 30 1 1.1103 0.0287 -2.4487 31 1 -0.1263 -0.1789 -4.5879 32 1 -1.5793 -0.6934 -3.6980 33 1 -1.2766 -3.3576 -4.8508 34 1 1.5813 -3.4579 -10.7515 35 1 -1.3022 -5.7576 -12.6520 36 1 -3.8699 -5.3553 -10.3888 37 1 -2.3204 -7.7347 -9.7829 38 1 -2.2263 -7.7127 -12.6448 39 1 -4.6310 -7.5311 -12.3208 40 1 -1.9001 -4.6834 -8.5647 41 1 2.1324 -2.4163 -9.3184 42 1 2.9274 -1.2668 -7.2672 43 1 -1.5788 -2.8569 -2.4484 44 1 -0.1255 -3.8841 -2.4482 45 1 -0.3431 -2.6488 -0.3093 46 1 1.1103 -2.1350 -1.1993 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081518_17085550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:59:14 Heat of formation + Delta-G solvation = 144.085418 kcal Electronic energy + Delta-G solvation = -27452.100029 eV Core-core repulsion = 23653.724761 eV Total energy + Delta-G solvation = -3798.375269 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.172 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.23797 -41.37794 -40.95239 -38.24761 -38.01934 -35.61935 -35.06083 -33.68060 -32.98705 -32.02983 -31.13980 -28.93703 -27.34390 -26.39694 -24.83597 -24.19304 -23.87179 -23.30552 -22.16245 -21.41317 -19.41648 -18.81405 -18.55098 -18.38138 -18.24497 -18.10896 -17.49498 -17.22881 -16.61682 -16.50447 -16.32189 -16.30845 -16.15197 -15.33762 -15.30235 -14.95801 -14.80206 -14.66911 -14.32423 -14.21722 -14.17280 -13.75844 -13.39929 -13.34893 -12.84498 -12.72196 -12.60785 -12.30889 -12.23902 -12.16601 -11.96980 -11.94965 -11.51403 -11.27221 -10.98372 -10.66650 -10.61812 -10.25817 -10.07353 -9.12866 -4.99126 -0.80484 -0.01138 0.18221 0.58786 1.19471 1.53108 1.53618 1.80459 1.90292 2.47737 2.81198 2.94016 3.10272 3.17392 3.24223 3.30016 3.40102 3.47317 3.59662 3.67053 3.73959 3.75274 3.80469 3.91587 3.94810 4.10063 4.12305 4.19921 4.23142 4.24939 4.35188 4.43193 4.49340 4.54476 4.62042 4.63148 4.69332 4.73454 4.87770 4.92924 4.95226 4.97484 5.05309 5.07876 5.15041 5.25150 5.35572 5.41774 5.79696 6.07321 6.32921 6.34483 6.71667 7.23747 Molecular weight = 329.17amu Principal moments of inertia in cm(-1) A = 0.019446 B = 0.002587 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.561718 B =10822.007715 C =11926.788851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 H 0.443 0.557 3 H 0.450 0.550 4 H 0.451 0.549 5 C 0.052 3.948 6 H 0.152 0.848 7 C -0.134 4.134 8 C -0.129 4.129 9 C 0.154 3.846 10 H 0.082 0.918 11 N -0.697 5.697 12 C 0.553 3.447 13 N -0.592 5.592 14 C 0.248 3.752 15 C -0.120 4.120 16 C 0.135 3.865 17 N -0.498 5.498 18 C 0.114 3.886 19 C -0.175 4.175 20 C -0.070 4.070 21 O -0.545 6.545 22 Si 0.759 3.241 23 C -0.010 4.010 24 C -0.279 4.279 25 C 0.194 3.806 26 N -0.574 5.574 27 C -0.128 4.128 28 C -0.134 4.134 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.413 0.587 34 H 0.189 0.811 35 H 0.174 0.826 36 H 0.133 0.867 37 H 0.387 0.613 38 H -0.280 1.280 39 H -0.299 1.299 40 H 0.143 0.857 41 H 0.171 0.829 42 H 0.204 0.796 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.114 0.886 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.788 18.908 34.188 39.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.274 0.726 3 H 0.282 0.718 4 H 0.283 0.717 5 C -0.054 4.054 6 H 0.170 0.830 7 C -0.172 4.172 8 C -0.169 4.169 9 C 0.050 3.950 10 H 0.100 0.900 11 N -0.334 5.334 12 C 0.196 3.804 13 N -0.315 5.315 14 C 0.102 3.898 15 C -0.123 4.123 16 C -0.023 4.023 17 N -0.205 5.205 18 C -0.042 4.042 19 C -0.177 4.177 20 C -0.180 4.180 21 O -0.353 6.353 22 Si 0.664 3.336 23 C -0.036 4.036 24 C -0.304 4.304 25 C 0.028 3.972 26 N -0.297 5.297 27 C -0.167 4.167 28 C -0.172 4.172 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.251 0.749 34 H 0.206 0.794 35 H 0.191 0.809 36 H 0.150 0.850 37 H 0.236 0.764 38 H -0.206 1.206 39 H -0.227 1.227 40 H 0.161 0.839 41 H 0.188 0.812 42 H 0.221 0.779 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.132 0.868 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.145 18.426 34.055 38.848 hybrid contribution 0.122 -1.237 0.264 1.270 sum 3.267 17.189 34.320 38.522 Atomic orbital electron populations 1.42222 1.22021 1.21055 1.16578 0.72639 0.71839 0.71746 1.22840 1.04657 0.93257 0.84658 0.83005 1.21925 1.03496 1.00425 0.91394 1.21836 1.01435 0.94740 0.98855 1.21251 0.99730 0.91525 0.82510 0.89967 1.44368 1.28615 1.54937 1.05495 1.19520 0.86989 0.87032 0.86887 1.67724 1.36404 1.27612 0.99783 1.19666 0.90194 0.90421 0.89529 1.19626 0.97058 1.01852 0.93783 1.23414 0.99397 0.93301 0.86219 1.67835 1.14259 1.08703 1.29704 1.23096 0.89401 0.94140 0.97544 1.21341 0.99357 1.01954 0.95032 1.25056 0.96335 0.92341 1.04242 1.86589 1.58569 1.39598 1.50498 0.94117 0.76951 0.85036 0.77491 1.21647 0.93812 0.90076 0.98094 1.22829 0.99751 1.04252 1.03553 1.23504 0.96725 0.91240 0.85762 1.67944 1.08517 1.22751 1.30466 1.21733 1.02515 0.99777 0.92653 1.21929 1.03616 0.92738 0.98887 0.87656 0.88619 0.93426 0.91194 0.74927 0.79389 0.80901 0.84968 0.76400 1.20610 1.22711 0.83888 0.81201 0.77935 0.89855 0.91646 0.86771 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.44 4.15 -168.68 -0.70 46.73 16 2 H 0.44 -34.99 8.90 -89.70 -0.80 -35.79 16 3 H 0.45 -36.08 8.96 -89.69 -0.80 -36.88 16 4 H 0.45 -36.36 8.96 -89.69 -0.80 -37.16 16 5 C 0.05 -3.31 3.03 44.92 0.14 -3.17 16 6 H 0.15 -9.79 8.14 -2.39 -0.02 -9.81 16 7 C -0.13 7.20 5.43 30.60 0.17 7.37 16 8 C -0.13 5.05 5.51 30.59 0.17 5.22 16 9 C 0.15 -5.42 2.45 44.99 0.11 -5.31 16 10 H 0.08 -2.65 7.50 -2.39 -0.02 -2.66 16 11 N -0.70 17.40 5.22 -330.51 -1.73 15.67 16 12 C 0.55 -9.46 8.40 261.53 2.20 -7.27 16 13 N -0.59 7.53 9.70 -187.03 -1.81 5.71 16 14 C 0.25 -3.35 6.76 41.99 0.28 -3.07 16 15 C -0.12 1.51 5.89 -19.95 -0.12 1.39 16 16 C 0.14 -1.82 10.61 84.97 0.90 -0.92 16 17 N -0.50 4.88 10.35 -194.91 -2.02 2.87 16 18 C 0.11 -1.38 9.84 84.70 0.83 -0.55 16 19 C -0.17 2.26 5.39 -19.81 -0.11 2.15 16 20 C -0.07 0.98 2.84 71.23 0.20 1.19 16 21 O -0.54 5.97 12.77 -148.98 -1.90 4.06 16 22 Si 0.76 -10.70 29.82 68.60 2.05 -8.66 16 23 C -0.01 0.11 9.30 22.69 0.21 0.32 16 24 C -0.28 5.20 9.53 22.66 0.22 5.42 16 25 C 0.19 -4.04 11.29 84.65 0.96 -3.08 16 26 N -0.57 10.89 9.19 -198.19 -1.82 9.07 16 27 C -0.13 5.44 5.39 30.58 0.16 5.61 16 28 C -0.13 7.42 5.43 30.57 0.17 7.59 16 29 H 0.11 -5.85 8.14 -2.39 -0.02 -5.87 16 30 H 0.10 -5.15 8.14 -2.39 -0.02 -5.16 16 31 H 0.05 -1.42 8.14 -2.38 -0.02 -1.44 16 32 H 0.07 -2.67 8.14 -2.39 -0.02 -2.68 16 33 H 0.41 -10.43 8.72 -92.71 -0.81 -11.24 16 34 H 0.19 -3.71 6.32 -2.91 -0.02 -3.72 16 35 H 0.17 -2.74 4.88 -2.91 -0.01 -2.75 16 36 H 0.13 -2.13 7.96 -2.39 -0.02 -2.15 16 37 H 0.39 -6.17 8.70 -74.05 -0.64 -6.81 16 38 H -0.28 2.78 7.11 99.48 0.71 3.49 16 39 H -0.30 1.74 7.11 99.48 0.71 2.45 16 40 H 0.14 -1.58 7.68 -2.91 -0.02 -1.60 16 41 H 0.17 -4.06 6.38 -2.91 -0.02 -4.07 16 42 H 0.20 -5.70 8.06 -2.91 -0.02 -5.72 16 43 H 0.08 -3.54 8.14 -2.39 -0.02 -3.56 16 44 H 0.06 -2.39 8.14 -2.39 -0.02 -2.41 16 45 H 0.11 -6.67 8.14 -2.39 -0.02 -6.69 16 46 H 0.10 -5.39 8.14 -2.39 -0.02 -5.41 16 Total: 1.00 -95.13 368.79 -4.20 -99.33 By element: Atomic # 1 Polarization: -184.93 SS G_CDS: -2.75 Total: -187.68 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 6.49 Total: 12.89 kcal Atomic # 7 Polarization: 88.13 SS G_CDS: -8.08 Total: 80.05 kcal Atomic # 8 Polarization: 5.97 SS G_CDS: -1.90 Total: 4.06 kcal Atomic # 14 Polarization: -10.70 SS G_CDS: 2.05 Total: -8.66 kcal Total: -95.13 -4.20 -99.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081518_17085550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.416 kcal (2) G-P(sol) polarization free energy of solvation -95.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds