Wall clock time and date at job start Mon Mar 8 2021 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00901 * 1 3 3 H 1.00906 * 109.47114 * 1 2 4 4 H 1.00902 * 109.47309 * 240.00643 * 1 2 3 5 5 C 1.46901 * 109.47628 * 120.00217 * 1 2 3 6 6 H 1.09001 * 109.46874 * 300.00124 * 5 1 2 7 7 C 1.53000 * 109.46769 * 59.99844 * 5 1 2 8 8 C 1.52997 * 109.47060 * 180.02562 * 7 5 1 9 9 C 1.53006 * 109.47127 * 300.00449 * 8 7 5 10 10 H 1.09001 * 109.47002 * 299.99574 * 9 8 7 11 11 N 1.46504 * 109.46883 * 180.02562 * 9 8 7 12 12 C 1.34773 * 120.00111 * 84.99828 * 11 9 8 13 13 O 1.21534 * 120.00118 * 0.02562 * 12 11 9 14 14 C 1.48009 * 119.99719 * 179.97438 * 12 11 9 15 15 C 1.39862 * 120.06761 * 179.97438 * 14 12 11 16 16 C 1.38539 * 118.00379 * 180.02562 * 15 14 12 17 17 C 1.39697 * 118.00817 * 359.97438 * 16 15 14 18 18 C 1.48213 * 120.07230 * 180.02562 * 17 16 15 19 19 C 1.39394 * 120.54925 * 5.00035 * 18 17 16 20 20 N 1.31719 * 120.58948 * 180.02562 * 19 18 17 21 21 C 1.31901 * 121.85915 * 0.02562 * 20 19 18 22 22 C 1.38332 * 121.05401 * 359.97438 * 21 20 19 23 23 C 1.50694 * 120.35949 * 180.02562 * 22 21 20 24 24 O 1.42898 * 109.47515 * 119.99677 * 23 22 21 25 25 Si 1.86303 * 109.47167 * 359.97438 * 23 22 21 26 26 C 1.38388 * 119.28710 * 359.76490 * 22 21 20 27 27 N 1.33046 * 119.85598 * 0.02562 * 17 16 15 28 28 N 1.28359 * 122.13500 * 359.70569 * 27 17 16 29 29 C 1.52997 * 109.47164 * 59.99836 * 9 8 7 30 30 C 1.52996 * 109.47195 * 179.97438 * 5 1 2 31 31 H 1.09002 * 109.47398 * 300.00295 * 7 5 1 32 32 H 1.09001 * 109.47194 * 60.00475 * 7 5 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 8 7 5 34 34 H 1.08996 * 109.47853 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99624 * 264.99510 * 11 9 8 36 36 H 1.07996 * 121.00013 * 0.02970 * 15 14 12 37 37 H 1.07996 * 120.99514 * 179.97438 * 16 15 14 38 38 H 1.08005 * 119.70309 * 359.97438 * 19 18 17 39 39 H 1.08001 * 119.47446 * 180.02562 * 21 20 19 40 40 H 1.09005 * 109.46995 * 240.00344 * 23 22 21 41 41 H 0.96701 * 114.00007 * 299.99878 * 24 23 22 42 42 H 1.48500 * 110.00362 * 180.02562 * 25 23 22 43 43 H 1.48505 * 109.99754 * 301.32216 * 25 23 22 44 44 H 1.08004 * 120.84978 * 180.27502 * 26 22 21 45 45 H 1.09002 * 109.47045 * 180.02562 * 29 9 8 46 46 H 1.09001 * 109.47375 * 59.99966 * 29 9 8 47 47 H 1.08992 * 109.47554 * 299.99900 * 30 5 1 48 48 H 1.09004 * 109.47108 * 60.00150 * 30 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9514 0.0000 4 1 -0.3364 -0.4756 0.8239 5 6 -0.4898 -0.6925 -1.1994 6 1 -0.1265 -0.1787 -2.0894 7 6 0.0202 -2.1350 -1.1993 8 6 -0.4893 -2.8562 -2.4488 9 6 -2.0194 -2.8561 -2.4493 10 1 -2.3831 -3.3700 -1.5595 11 7 -2.5073 -3.5471 -3.6455 12 6 -2.6360 -4.8887 -3.6432 13 8 -2.3478 -5.5252 -2.6488 14 6 -3.1294 -5.5868 -4.8515 15 6 -3.2631 -6.9790 -4.8510 16 6 -3.7283 -7.5882 -6.0050 17 6 -4.0358 -6.7746 -7.0982 18 6 -4.5374 -7.3782 -8.3554 19 6 -4.8057 -8.7441 -8.4279 20 7 -5.2510 -9.2815 -9.5449 21 6 -5.4594 -8.5605 -10.6296 22 6 -5.2173 -7.1985 -10.6385 23 6 -5.4614 -6.3897 -11.8864 24 8 -6.4357 -5.3798 -11.6166 25 14 -6.0842 -7.5085 -13.2397 26 6 -4.7536 -6.5858 -9.4876 27 7 -3.8774 -5.4566 -7.0082 28 7 -3.4512 -4.8917 -5.9373 29 6 -2.5293 -1.4136 -2.4494 30 6 -2.0198 -0.6930 -1.1990 31 1 1.1102 -2.1351 -1.1993 32 1 -0.3431 -2.6488 -0.3093 33 1 -0.1257 -2.3423 -3.3386 34 1 -0.1265 -3.8839 -2.4486 35 1 -2.7377 -3.0391 -4.4390 36 1 -3.0113 -7.5616 -3.9772 37 1 -3.8495 -8.6600 -6.0580 38 1 -4.6461 -9.3676 -7.5605 39 1 -5.8258 -9.0409 -11.5248 40 1 -4.5299 -5.9206 -12.2033 41 1 -7.2916 -5.7259 -11.3289 42 1 -6.3283 -6.7230 -14.4760 43 1 -5.0934 -8.5817 -13.5076 44 1 -4.5604 -5.5234 -9.4651 45 1 -3.6193 -1.4135 -2.4494 46 1 -2.1656 -0.8996 -3.3392 47 1 -2.3827 -1.2070 -0.3090 48 1 -2.3834 0.3346 -1.1988 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081518_17088014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:19:24 Heat of formation + Delta-G solvation = 105.179979 kcal Electronic energy + Delta-G solvation = -30491.359989 eV Core-core repulsion = 26244.389321 eV Total energy + Delta-G solvation = -4246.970668 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.171 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.59597 -41.59853 -41.21702 -40.27927 -37.98529 -37.48445 -35.60218 -34.49539 -34.44424 -33.59445 -32.03259 -31.85493 -29.45651 -27.57417 -26.74854 -26.24258 -24.23672 -24.07580 -23.76633 -22.79765 -22.00359 -21.55694 -19.68810 -19.00558 -18.73544 -18.45822 -18.30039 -18.06107 -17.65571 -17.54299 -17.27711 -17.04253 -16.85969 -16.35875 -16.13536 -15.83362 -15.58753 -15.27767 -15.16954 -14.94000 -14.74161 -14.50345 -14.37028 -14.24915 -14.12672 -13.70291 -13.49234 -13.39060 -13.05029 -12.93445 -12.57721 -12.50930 -12.28065 -12.20273 -12.08789 -11.71768 -11.56991 -11.54444 -11.39951 -11.16888 -10.90398 -10.63776 -10.49479 -10.30176 -9.94864 -5.05161 -1.25850 -0.50550 -0.09828 0.11110 1.21218 1.37513 1.53706 1.57711 1.78367 1.93327 2.27004 2.37939 2.64496 2.86734 3.08916 3.11683 3.23025 3.25173 3.40955 3.45056 3.51180 3.61078 3.66153 3.67509 3.69258 3.73330 3.77707 3.86144 3.92916 4.08525 4.13895 4.18380 4.30651 4.34047 4.43524 4.47540 4.48778 4.55577 4.59249 4.62749 4.68321 4.77698 4.84846 4.93419 4.96720 4.97181 5.04188 5.05906 5.14363 5.19849 5.35449 5.37227 6.15745 6.66040 6.69951 6.81592 7.19241 Molecular weight = 357.17amu Principal moments of inertia in cm(-1) A = 0.020398 B = 0.001821 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.336222 B =15372.307017 C =16401.701544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.450 0.550 3 H 0.451 0.549 4 H 0.443 0.557 5 C 0.052 3.948 6 H 0.156 0.844 7 C -0.136 4.136 8 C -0.133 4.133 9 C 0.130 3.870 10 H 0.080 0.920 11 N -0.701 5.701 12 C 0.581 3.419 13 O -0.551 6.551 14 C 0.000 4.000 15 C -0.059 4.059 16 C -0.103 4.103 17 C 0.132 3.868 18 C -0.118 4.118 19 C 0.137 3.863 20 N -0.495 5.495 21 C 0.118 3.882 22 C -0.174 4.174 23 C -0.063 4.063 24 O -0.552 6.552 25 Si 0.768 3.232 26 C -0.011 4.011 27 N -0.257 5.257 28 N -0.213 5.213 29 C -0.127 4.127 30 C -0.136 4.136 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.417 0.583 36 H 0.182 0.818 37 H 0.197 0.803 38 H 0.194 0.806 39 H 0.176 0.824 40 H 0.115 0.885 41 H 0.397 0.603 42 H -0.297 1.297 43 H -0.280 1.280 44 H 0.146 0.854 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.635 24.080 30.213 41.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.282 0.718 3 H 0.283 0.717 4 H 0.273 0.727 5 C -0.054 4.054 6 H 0.173 0.827 7 C -0.175 4.175 8 C -0.172 4.172 9 C 0.027 3.973 10 H 0.098 0.902 11 N -0.351 5.351 12 C 0.364 3.636 13 O -0.428 6.428 14 C -0.146 4.146 15 C -0.087 4.087 16 C -0.131 4.131 17 C -0.010 4.010 18 C -0.122 4.122 19 C -0.022 4.022 20 N -0.202 5.202 21 C -0.037 4.037 22 C -0.176 4.176 23 C -0.174 4.174 24 O -0.359 6.359 25 Si 0.674 3.326 26 C -0.038 4.038 27 N -0.101 5.101 28 N -0.060 5.060 29 C -0.166 4.166 30 C -0.174 4.174 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.255 0.745 36 H 0.200 0.800 37 H 0.214 0.786 38 H 0.211 0.789 39 H 0.193 0.807 40 H 0.133 0.867 41 H 0.247 0.753 42 H -0.225 1.225 43 H -0.207 1.207 44 H 0.164 0.836 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.114 0.886 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.108 24.211 29.045 40.719 hybrid contribution 0.544 -0.303 0.225 0.662 sum 15.652 23.909 29.270 40.907 Atomic orbital electron populations 1.42228 1.22107 1.20935 1.16646 0.71833 0.71676 0.72700 1.22850 0.96798 0.95410 0.90309 0.82677 1.21940 1.03520 0.93130 0.98881 1.21856 0.93905 1.01331 1.00140 1.21461 0.94699 0.93940 0.87197 0.90191 1.45970 1.65064 1.05538 1.18537 1.17498 0.77534 0.83387 0.85143 1.90822 1.51355 1.66888 1.33783 1.23010 1.01457 0.94272 0.95867 1.22659 0.92170 0.93853 1.00040 1.22815 0.95173 1.04237 0.90849 1.21395 0.93776 0.91627 0.94174 1.19394 1.05202 0.95217 0.92377 1.23470 0.90965 0.91097 0.96682 1.67830 1.12878 1.39640 0.99878 1.23131 0.93426 0.90249 0.96927 1.21413 1.02920 0.95670 0.97636 1.25022 0.95989 0.96315 1.00067 1.86499 1.25650 1.33679 1.90117 0.93817 0.86911 0.76516 0.75368 1.21715 0.90443 1.01088 0.90520 1.73262 1.10522 1.09986 1.16341 1.73122 1.05586 1.31731 0.95541 1.21765 1.02035 0.92094 1.00697 1.21979 0.92161 1.04335 0.98927 0.87394 0.88914 0.90111 0.93492 0.74533 0.80030 0.78564 0.78907 0.80750 0.86738 0.75327 1.22504 1.20683 0.83601 0.91080 0.89240 0.88624 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.48 4.15 -168.68 -0.70 46.78 16 2 H 0.45 -36.08 8.96 -89.69 -0.80 -36.89 16 3 H 0.45 -36.48 8.96 -89.69 -0.80 -37.29 16 4 H 0.44 -34.85 8.90 -89.69 -0.80 -35.65 16 5 C 0.05 -3.34 3.02 44.91 0.14 -3.21 16 6 H 0.16 -10.11 8.14 -2.39 -0.02 -10.13 16 7 C -0.14 7.29 5.43 30.59 0.17 7.45 16 8 C -0.13 5.22 5.49 30.60 0.17 5.39 16 9 C 0.13 -4.60 2.45 44.99 0.11 -4.48 16 10 H 0.08 -2.53 7.57 -2.39 -0.02 -2.55 16 11 N -0.70 18.38 5.07 -445.24 -2.26 16.12 16 12 C 0.58 -10.61 7.77 86.84 0.68 -9.93 16 13 O -0.55 7.45 16.04 -3.82 -0.06 7.39 16 14 C 0.00 0.00 6.83 41.97 0.29 0.28 16 15 C -0.06 1.09 9.71 22.74 0.22 1.31 16 16 C -0.10 2.03 9.54 22.69 0.22 2.24 16 17 C 0.13 -1.90 6.81 41.97 0.29 -1.61 16 18 C -0.12 1.64 5.89 -19.95 -0.12 1.53 16 19 C 0.14 -2.10 10.60 84.99 0.90 -1.20 16 20 N -0.49 5.58 10.35 -194.87 -2.02 3.56 16 21 C 0.12 -1.55 9.84 84.70 0.83 -0.72 16 22 C -0.17 2.33 5.39 -19.81 -0.11 2.22 16 23 C -0.06 0.87 2.83 71.23 0.20 1.07 16 24 O -0.55 7.09 12.77 -148.98 -1.90 5.19 16 25 Si 0.77 -10.97 29.82 68.60 2.05 -8.93 16 26 C -0.01 0.14 9.29 22.70 0.21 0.35 16 27 N -0.26 2.82 10.72 -48.32 -0.52 2.30 16 28 N -0.21 2.85 10.73 -48.46 -0.52 2.33 16 29 C -0.13 5.52 5.40 30.61 0.17 5.68 16 30 C -0.14 7.61 5.43 30.61 0.17 7.78 16 31 H 0.11 -5.99 8.14 -2.39 -0.02 -6.01 16 32 H 0.09 -4.91 8.14 -2.39 -0.02 -4.93 16 33 H 0.08 -3.19 8.14 -2.39 -0.02 -3.21 16 34 H 0.05 -1.39 8.14 -2.39 -0.02 -1.41 16 35 H 0.42 -11.31 7.95 -92.71 -0.74 -12.05 16 36 H 0.18 -3.94 7.71 -2.91 -0.02 -3.96 16 37 H 0.20 -5.33 6.34 -2.91 -0.02 -5.35 16 38 H 0.19 -4.39 6.28 -2.91 -0.02 -4.41 16 39 H 0.18 -2.93 4.88 -2.91 -0.01 -2.94 16 40 H 0.12 -1.50 7.96 -2.38 -0.02 -1.51 16 41 H 0.40 -8.19 8.70 -74.06 -0.64 -8.84 16 42 H -0.30 1.76 7.11 99.48 0.71 2.47 16 43 H -0.28 2.71 7.11 99.48 0.71 3.42 16 44 H 0.15 -1.64 7.66 -2.91 -0.02 -1.66 16 45 H 0.07 -2.70 8.14 -2.39 -0.02 -2.72 16 46 H 0.09 -3.93 8.14 -2.39 -0.02 -3.95 16 47 H 0.10 -5.34 8.14 -2.39 -0.02 -5.36 16 48 H 0.12 -6.94 8.14 -2.38 -0.02 -6.96 16 Total: 1.00 -98.89 390.78 -4.09 -102.98 By element: Atomic # 1 Polarization: -189.20 SS G_CDS: -2.68 Total: -191.88 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 4.52 Total: 14.15 kcal Atomic # 7 Polarization: 77.11 SS G_CDS: -6.01 Total: 71.10 kcal Atomic # 8 Polarization: 14.54 SS G_CDS: -1.96 Total: 12.58 kcal Atomic # 14 Polarization: -10.97 SS G_CDS: 2.05 Total: -8.93 kcal Total: -98.89 -4.09 -102.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081518_17088014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.158 kcal (2) G-P(sol) polarization free energy of solvation -98.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds