Wall clock time and date at job start Mon Mar 8 2021 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00898 * 1 3 3 H 1.00903 * 109.47051 * 1 2 4 4 H 1.00901 * 109.46776 * 240.00920 * 1 2 3 5 5 C 1.46898 * 109.47575 * 120.00687 * 1 2 3 6 6 H 1.09001 * 109.47062 * 179.97438 * 5 1 2 7 7 C 1.53006 * 109.47006 * 299.99671 * 5 1 2 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 5 1 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 5 10 10 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 12 12 C 1.34782 * 120.00074 * 155.00031 * 11 9 8 13 13 O 1.21534 * 119.99924 * 359.97438 * 12 11 9 14 14 C 1.47985 * 119.99873 * 180.02562 * 12 11 9 15 15 C 1.39513 * 119.98493 * 180.02562 * 14 12 11 16 16 N 1.31937 * 120.00453 * 180.02562 * 15 14 12 17 17 C 1.32954 * 119.98389 * 359.97234 * 16 15 14 18 18 C 1.48187 * 120.01526 * 180.02562 * 17 16 15 19 19 C 1.39408 * 120.54958 * 185.00203 * 18 17 16 20 20 N 1.31726 * 120.58181 * 180.02562 * 19 18 17 21 21 C 1.31907 * 121.86652 * 359.97438 * 20 19 18 22 22 C 1.38338 * 121.05009 * 359.97438 * 21 20 19 23 23 C 1.50698 * 120.35268 * 180.02562 * 22 21 20 24 24 O 1.42904 * 109.47464 * 119.99554 * 23 22 21 25 25 Si 1.86299 * 109.47220 * 359.97438 * 23 22 21 26 26 C 1.38391 * 119.29383 * 359.78369 * 22 21 20 27 27 C 1.39933 * 119.97575 * 0.02562 * 17 16 15 28 28 N 1.31570 * 119.98548 * 359.73750 * 27 17 16 29 29 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 30 30 C 1.52997 * 109.47123 * 59.99652 * 5 1 2 31 31 H 1.08998 * 109.46505 * 59.99663 * 7 5 1 32 32 H 1.08996 * 109.46884 * 300.00544 * 7 5 1 33 33 H 1.09002 * 109.47153 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46832 * 60.00321 * 8 7 5 35 35 H 0.97002 * 120.00427 * 334.99530 * 11 9 8 36 36 H 1.08001 * 119.99369 * 359.97438 * 15 14 12 37 37 H 1.08003 * 119.70935 * 0.02562 * 19 18 17 38 38 H 1.07994 * 119.47724 * 180.02562 * 21 20 19 39 39 H 1.09007 * 109.46808 * 239.99676 * 23 22 21 40 40 H 0.96697 * 114.00037 * 179.97438 * 24 23 22 41 41 H 1.48498 * 109.99704 * 60.00084 * 25 23 22 42 42 H 1.48502 * 110.00100 * 181.32088 * 25 23 22 43 43 H 1.07996 * 120.84646 * 180.23824 * 26 22 21 44 44 H 1.07991 * 120.00675 * 180.02562 * 27 17 16 45 45 H 1.08992 * 109.47554 * 59.99639 * 29 9 8 46 46 H 1.09004 * 109.47108 * 179.97438 * 29 9 8 47 47 H 1.09002 * 109.47045 * 60.00157 * 30 5 1 48 48 H 1.09001 * 109.47375 * 300.00082 * 30 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3363 -0.4755 0.8239 5 6 -0.4898 -0.6926 -1.1993 6 1 -1.5798 -0.6930 -1.1990 7 6 0.0201 0.0286 -2.4487 8 6 -0.4894 -0.6931 -3.6978 9 6 0.0210 -2.1355 -3.6973 10 1 1.1110 -2.1352 -3.6972 11 7 -0.4664 -2.8263 -4.8937 12 6 0.2110 -3.8830 -5.3848 13 8 1.2265 -4.2625 -4.8353 14 6 -0.2811 -4.5805 -6.5936 15 6 0.4200 -5.6746 -7.1013 16 7 -0.0181 -6.2964 -8.1794 17 6 -1.1282 -5.8804 -8.7814 18 6 -1.6212 -6.5786 -9.9919 19 6 -2.7236 -6.0905 -10.6918 20 7 -3.1627 -6.7110 -11.7677 21 6 -2.5862 -7.8061 -12.2241 22 6 -1.4869 -8.3526 -11.5864 23 6 -0.8402 -9.6040 -12.1218 24 8 0.5226 -9.3312 -12.4543 25 14 -1.7502 -10.1702 -13.6456 26 6 -0.9843 -7.7349 -10.4545 27 6 -1.8309 -4.7829 -8.2714 28 7 -1.3955 -4.1666 -7.1936 29 6 -0.4889 -2.8566 -2.4481 30 6 0.0202 -2.1351 -1.1992 31 1 1.1101 0.0286 -2.4487 32 1 -0.3431 1.0562 -2.4487 33 1 -0.1258 -0.1796 -4.5879 34 1 -1.5794 -0.6935 -3.6979 35 1 -1.2767 -2.5233 -5.3325 36 1 1.3219 -6.0120 -6.6123 37 1 -3.2221 -5.1958 -10.3490 38 1 -2.9782 -8.2832 -13.1101 39 1 -0.8797 -10.3862 -11.3637 40 1 1.0020 -10.0939 -12.8056 41 1 -1.7041 -9.1126 -14.6870 42 1 -1.1419 -11.4214 -14.1650 43 1 -0.1250 -8.1378 -9.9393 44 1 -2.7328 -4.4449 -8.7598 45 1 -1.5789 -2.8569 -2.4481 46 1 -0.1256 -3.8843 -2.4480 47 1 -0.3430 -2.6488 -0.3091 48 1 1.1102 -2.1351 -1.1993 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081518_17088084.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:25:28 Heat of formation + Delta-G solvation = 96.809403 kcal Electronic energy + Delta-G solvation = -30419.863383 eV Core-core repulsion = 26172.529740 eV Total energy + Delta-G solvation = -4247.333643 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.171 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.68352 -41.56608 -41.18626 -40.23420 -38.06892 -37.45411 -36.09456 -34.56498 -34.37971 -33.83111 -32.02036 -31.59438 -29.40992 -27.54974 -27.00597 -25.84354 -24.29512 -24.14407 -23.65761 -22.69553 -21.87869 -21.53257 -19.59794 -19.11798 -18.67680 -18.62417 -18.43064 -18.27649 -17.91155 -17.56951 -17.34123 -17.06461 -16.76510 -16.39476 -15.99068 -15.82310 -15.58001 -15.48239 -15.16880 -14.97722 -14.76994 -14.42530 -14.30793 -14.16137 -14.05985 -13.81285 -13.68533 -13.37753 -13.06564 -12.91983 -12.74376 -12.59756 -12.50123 -12.26095 -12.15171 -11.70022 -11.66881 -11.55602 -11.46607 -10.90749 -10.78936 -10.48467 -10.42100 -10.27233 -9.78869 -4.99697 -1.33279 -0.27425 -0.08214 0.13361 1.19223 1.43543 1.54672 1.55494 1.81304 1.90043 2.33350 2.50293 2.66890 2.68043 2.96411 3.10307 3.11867 3.25380 3.30408 3.50200 3.56343 3.60358 3.64624 3.69758 3.73045 3.75977 3.87678 3.89231 3.95065 4.10424 4.14676 4.20650 4.22828 4.35821 4.39647 4.48759 4.50853 4.57209 4.64017 4.70263 4.83665 4.86625 4.88764 4.98165 5.01477 5.05921 5.07682 5.16608 5.21891 5.35353 5.39413 5.76263 6.16510 6.38352 6.47525 6.68618 6.89060 Molecular weight = 357.17amu Principal moments of inertia in cm(-1) A = 0.031634 B = 0.001693 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.900767 B =16532.997319 C =17088.078183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.442 0.558 3 H 0.452 0.548 4 H 0.450 0.550 5 C 0.053 3.947 6 H 0.158 0.842 7 C -0.137 4.137 8 C -0.125 4.125 9 C 0.130 3.870 10 H 0.076 0.924 11 N -0.697 5.697 12 C 0.580 3.420 13 O -0.556 6.556 14 C 0.008 3.992 15 C 0.112 3.888 16 N -0.458 5.458 17 C 0.149 3.851 18 C -0.121 4.121 19 C 0.139 3.861 20 N -0.492 5.492 21 C 0.118 3.882 22 C -0.138 4.138 23 C -0.079 4.079 24 O -0.558 6.558 25 Si 0.760 3.240 26 C -0.014 4.014 27 C 0.072 3.928 28 N -0.400 5.400 29 C -0.132 4.132 30 C -0.138 4.138 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.419 0.581 36 H 0.186 0.814 37 H 0.202 0.798 38 H 0.175 0.825 39 H 0.103 0.897 40 H 0.399 0.601 41 H -0.294 1.294 42 H -0.284 1.284 43 H 0.142 0.858 44 H 0.219 0.781 45 H 0.083 0.917 46 H 0.044 0.956 47 H 0.108 0.892 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 25.293 36.189 44.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.272 0.728 3 H 0.283 0.717 4 H 0.282 0.718 5 C -0.053 4.053 6 H 0.175 0.825 7 C -0.175 4.175 8 C -0.164 4.164 9 C 0.026 3.974 10 H 0.094 0.906 11 N -0.348 5.348 12 C 0.364 3.636 13 O -0.434 6.434 14 C -0.132 4.132 15 C -0.049 4.049 16 N -0.172 5.172 17 C 0.009 3.991 18 C -0.124 4.124 19 C -0.020 4.020 20 N -0.199 5.199 21 C -0.037 4.037 22 C -0.140 4.140 23 C -0.188 4.188 24 O -0.369 6.369 25 Si 0.665 3.335 26 C -0.040 4.040 27 C -0.092 4.092 28 N -0.116 5.116 29 C -0.172 4.172 30 C -0.176 4.176 31 H 0.111 0.889 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.257 0.743 36 H 0.203 0.797 37 H 0.219 0.781 38 H 0.191 0.809 39 H 0.121 0.879 40 H 0.250 0.750 41 H -0.221 1.221 42 H -0.211 1.211 43 H 0.160 0.840 44 H 0.236 0.764 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.126 0.874 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.340 25.686 35.385 43.787 hybrid contribution 2.214 -1.148 -0.342 2.518 sum -0.126 24.538 35.043 42.780 Atomic orbital electron populations 1.42234 1.21980 1.21098 1.16648 0.72757 0.71663 0.71839 1.22850 1.04855 0.92647 0.84911 0.82484 1.21978 1.03492 1.00902 0.91140 1.21742 1.02994 0.91726 0.99939 1.21442 0.99754 0.92735 0.83427 0.90612 1.45889 1.29080 1.30045 1.29783 1.17545 0.83073 0.80849 0.82109 1.90827 1.25576 1.66478 1.60542 1.22234 0.94803 0.97559 0.98585 1.23917 0.99547 0.90812 0.90610 1.68524 1.12112 1.28743 1.07816 1.20990 0.91050 0.93443 0.93638 1.19490 0.99304 0.97624 0.96002 1.23533 0.90941 0.98606 0.88920 1.67847 1.30447 1.08476 1.13171 1.23046 0.91532 0.91110 0.98023 1.20462 0.97979 0.98752 0.96849 1.24864 0.87002 0.97303 1.09669 1.86526 1.22419 1.41979 1.85967 0.94280 0.88042 0.76513 0.74710 1.21708 0.96759 0.92341 0.93192 1.24330 1.01105 0.91534 0.92189 1.68352 1.09775 1.26557 1.06904 1.21839 1.02296 0.99304 0.93730 1.21936 1.03272 0.93422 0.98951 0.88886 0.86364 0.91085 0.88927 0.74298 0.79712 0.78143 0.80897 0.87940 0.75036 1.22146 1.21076 0.84025 0.76436 0.89827 0.93705 0.87409 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.69 4.15 -168.68 -0.70 46.99 16 2 H 0.44 -34.82 8.90 -89.70 -0.80 -35.62 16 3 H 0.45 -36.67 8.96 -89.69 -0.80 -37.47 16 4 H 0.45 -36.20 8.96 -89.69 -0.80 -37.00 16 5 C 0.05 -3.44 3.03 44.92 0.14 -3.30 16 6 H 0.16 -10.38 8.14 -2.39 -0.02 -10.40 16 7 C -0.14 7.74 5.43 30.60 0.17 7.91 16 8 C -0.13 5.57 5.39 30.59 0.16 5.73 16 9 C 0.13 -4.65 2.45 44.99 0.11 -4.54 16 10 H 0.08 -2.37 7.58 -2.39 -0.02 -2.39 16 11 N -0.70 19.12 5.07 -445.27 -2.26 16.86 16 12 C 0.58 -10.51 7.77 86.83 0.67 -9.84 16 13 O -0.56 6.75 15.99 -3.82 -0.06 6.69 16 14 C 0.01 -0.13 6.75 41.84 0.28 0.16 16 15 C 0.11 -1.40 10.76 84.98 0.91 -0.49 16 16 N -0.46 4.66 9.68 -183.24 -1.77 2.89 16 17 C 0.15 -2.05 6.74 42.03 0.28 -1.77 16 18 C -0.12 1.52 5.89 -19.95 -0.12 1.41 16 19 C 0.14 -2.08 10.60 84.99 0.90 -1.18 16 20 N -0.49 5.00 10.35 -194.85 -2.02 2.98 16 21 C 0.12 -1.25 9.84 84.71 0.83 -0.42 16 22 C -0.14 1.41 5.43 -19.80 -0.11 1.30 16 23 C -0.08 0.99 2.82 71.24 0.20 1.19 16 24 O -0.56 5.11 12.75 -148.98 -1.90 3.21 16 25 Si 0.76 -10.08 29.82 68.60 2.05 -8.04 16 26 C -0.01 0.13 9.29 22.71 0.21 0.34 16 27 C 0.07 -1.40 10.61 85.14 0.90 -0.49 16 28 N -0.40 7.45 9.69 -183.53 -1.78 5.67 16 29 C -0.13 5.26 5.49 30.58 0.17 5.42 16 30 C -0.14 7.37 5.43 30.58 0.17 7.53 16 31 H 0.09 -5.19 8.14 -2.39 -0.02 -5.21 16 32 H 0.12 -7.07 8.14 -2.39 -0.02 -7.09 16 33 H 0.07 -2.78 8.14 -2.39 -0.02 -2.80 16 34 H 0.09 -4.23 8.14 -2.39 -0.02 -4.25 16 35 H 0.42 -12.44 7.94 -92.71 -0.74 -13.18 16 36 H 0.19 -2.55 7.63 -2.91 -0.02 -2.57 16 37 H 0.20 -4.80 6.25 -2.91 -0.02 -4.82 16 38 H 0.17 -2.44 4.88 -2.91 -0.01 -2.46 16 39 H 0.10 -1.71 7.96 -2.38 -0.02 -1.72 16 40 H 0.40 -6.65 8.74 -74.06 -0.65 -7.30 16 41 H -0.29 1.74 7.11 99.48 0.71 2.45 16 42 H -0.28 2.38 7.11 99.48 0.71 3.08 16 43 H 0.14 -1.18 7.65 -2.91 -0.02 -1.20 16 44 H 0.22 -6.02 6.26 -2.92 -0.02 -6.04 16 45 H 0.08 -3.39 8.14 -2.39 -0.02 -3.41 16 46 H 0.04 -1.32 8.14 -2.38 -0.02 -1.34 16 47 H 0.11 -6.00 8.14 -2.39 -0.02 -6.02 16 48 H 0.09 -4.73 8.14 -2.39 -0.02 -4.75 16 Total: 1.00 -100.06 390.45 -5.23 -105.29 By element: Atomic # 1 Polarization: -188.85 SS G_CDS: -2.68 Total: -191.53 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.89 Total: 8.97 kcal Atomic # 7 Polarization: 83.93 SS G_CDS: -8.53 Total: 75.40 kcal Atomic # 8 Polarization: 11.86 SS G_CDS: -1.96 Total: 9.90 kcal Atomic # 14 Polarization: -10.08 SS G_CDS: 2.05 Total: -8.04 kcal Total: -100.06 -5.23 -105.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081518_17088084.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.104 kcal (2) G-P(sol) polarization free energy of solvation -100.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds