Wall clock time and date at job start Mon Mar 8 2021 06:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00901 * 1 3 3 H 1.00902 * 109.47309 * 1 2 4 4 H 1.00906 * 109.47114 * 240.00643 * 1 2 3 5 5 C 1.46901 * 109.47628 * 120.00426 * 1 2 3 6 6 H 1.09002 * 109.47401 * 179.97438 * 5 1 2 7 7 C 1.53000 * 109.46769 * 300.00156 * 5 1 2 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 5 1 9 9 C 1.53002 * 109.46963 * 299.99499 * 8 7 5 10 10 H 1.09002 * 109.47067 * 300.00341 * 9 8 7 11 11 N 1.46496 * 109.47313 * 180.02562 * 9 8 7 12 12 C 1.34773 * 120.00354 * 84.99862 * 11 9 8 13 13 O 1.21576 * 119.99822 * 0.02562 * 12 11 9 14 14 C 1.47690 * 120.00142 * 180.02562 * 12 11 9 15 15 C 1.40099 * 120.86037 * 359.72212 * 14 12 11 16 16 N 1.31946 * 119.01679 * 179.73398 * 15 14 12 17 17 C 1.32722 * 120.89038 * 0.53280 * 16 15 14 18 18 C 1.48186 * 119.04912 * 179.72016 * 17 16 15 19 19 C 1.39407 * 120.54638 * 179.74151 * 18 17 16 20 20 N 1.31722 * 120.58095 * 179.75502 * 19 18 17 21 21 C 1.31907 * 121.86528 * 0.54065 * 20 19 18 22 22 C 1.38338 * 121.05173 * 359.71850 * 21 20 19 23 23 C 1.50693 * 120.35547 * 180.02562 * 22 21 20 24 24 O 1.42899 * 109.47245 * 244.98487 * 23 22 21 25 25 Si 1.86308 * 109.47063 * 4.98305 * 23 22 21 26 26 C 1.38391 * 119.29145 * 0.02562 * 22 21 20 27 27 N 1.32720 * 121.90344 * 359.74287 * 17 16 15 28 28 C 1.31947 * 120.88620 * 359.97438 * 27 17 16 29 29 C 1.52997 * 109.47092 * 60.00194 * 9 8 7 30 30 C 1.53002 * 109.46860 * 59.99916 * 5 1 2 31 31 H 1.09001 * 109.47194 * 299.99524 * 7 5 1 32 32 H 1.08992 * 109.47399 * 59.99697 * 7 5 1 33 33 H 1.09000 * 109.47437 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47508 * 59.99571 * 8 7 5 35 35 H 0.97007 * 119.99693 * 264.99991 * 11 9 8 36 36 H 1.07992 * 120.48911 * 359.97438 * 15 14 12 37 37 H 1.07998 * 119.70859 * 0.02562 * 19 18 17 38 38 H 1.07999 * 119.47660 * 179.70691 * 21 20 19 39 39 H 1.09001 * 109.47542 * 124.97904 * 23 22 21 40 40 H 0.96696 * 114.00521 * 59.99787 * 24 23 22 41 41 H 1.48496 * 109.99967 * 180.02562 * 25 23 22 42 42 H 1.48502 * 109.99400 * 301.31742 * 25 23 22 43 43 H 1.07997 * 120.84471 * 179.97438 * 26 22 21 44 44 H 1.08004 * 120.48831 * 179.97438 * 28 27 17 45 45 H 1.09001 * 109.47375 * 180.02562 * 29 9 8 46 46 H 1.09002 * 109.47497 * 59.99850 * 29 9 8 47 47 H 1.09002 * 109.47075 * 299.99593 * 30 5 1 48 48 H 1.08996 * 109.47407 * 60.00550 * 30 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3364 -0.4756 0.8239 5 6 -0.4898 -0.6926 -1.1994 6 1 -1.5798 -0.6929 -1.1991 7 6 0.0202 0.0286 -2.4486 8 6 -0.4904 -0.6923 -3.6978 9 6 0.0191 -2.1350 -3.6981 10 1 1.1091 -2.1354 -3.6983 11 7 -0.4693 -2.8252 -4.8944 12 6 0.2076 -2.7224 -6.0553 13 8 1.2238 -2.0573 -6.1095 14 6 -0.2851 -3.4178 -7.2615 15 6 -1.4508 -4.1936 -7.2180 16 7 -1.8610 -4.7948 -8.3186 17 6 -1.1798 -4.6804 -9.4518 18 6 -1.6742 -5.3780 -10.6621 19 6 -0.9861 -5.2749 -11.8702 20 7 -1.4223 -5.8986 -12.9452 21 6 -2.5201 -6.6297 -12.9288 22 6 -3.2619 -6.7774 -11.7705 23 6 -4.5134 -7.6168 -11.7694 24 8 -5.6457 -6.7834 -11.5137 25 14 -4.7104 -8.4400 -13.4291 26 6 -2.8424 -6.1459 -10.6127 27 7 -0.0684 -3.9595 -9.5324 28 6 0.4043 -3.3233 -8.4775 29 6 -0.4908 -2.8562 -2.4488 30 6 0.0202 -2.1351 -1.1992 31 1 -0.3431 1.0563 -2.4487 32 1 1.1101 0.0286 -2.4487 33 1 -0.1268 -0.1789 -4.5879 34 1 -1.5804 -0.6920 -3.6975 35 1 -1.2800 -3.3562 -4.8510 36 1 -2.0076 -4.2950 -6.2982 37 1 -0.0851 -4.6818 -11.9240 38 1 -2.8452 -7.1207 -13.8342 39 1 -4.4397 -8.3781 -10.9928 40 1 -5.7733 -6.0819 -12.1668 41 1 -5.9414 -9.2704 -13.4412 42 1 -4.7802 -7.4135 -14.5000 43 1 -3.4025 -6.2438 -9.6945 44 1 1.3096 -2.7388 -8.5502 45 1 -0.1275 -3.8839 -2.4487 46 1 -1.5808 -2.8558 -2.4484 47 1 1.1102 -2.1351 -1.1994 48 1 -0.3431 -2.6489 -0.3093 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081518_17119452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:35:55 Heat of formation + Delta-G solvation = 99.234951 kcal Electronic energy + Delta-G solvation = -30497.081281 eV Core-core repulsion = 26249.852817 eV Total energy + Delta-G solvation = -4247.228463 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.171 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.63451 -41.57814 -41.19134 -40.23824 -38.09051 -37.43856 -35.40844 -35.05183 -34.27694 -33.63470 -32.00634 -31.99389 -29.36788 -27.42129 -26.84348 -25.87815 -24.45731 -24.15780 -23.52128 -22.92263 -21.84931 -21.50647 -19.43383 -19.28025 -18.85351 -18.43103 -18.27949 -18.05466 -17.96508 -17.50858 -17.27815 -17.01294 -16.70761 -16.35304 -15.96237 -15.88520 -15.85256 -15.18676 -15.14098 -14.98635 -14.73950 -14.65526 -14.39402 -14.20567 -14.17227 -13.66857 -13.36667 -13.35976 -13.07881 -12.90158 -12.67778 -12.48580 -12.28876 -12.24836 -12.10954 -11.72487 -11.67532 -11.48821 -11.24056 -10.88226 -10.75519 -10.65590 -10.51439 -10.28919 -9.95906 -4.95419 -1.30026 -0.19698 -0.10350 0.10527 1.22280 1.55470 1.56116 1.56767 1.87618 1.93155 2.28909 2.33996 2.72508 2.73243 3.10988 3.15927 3.20474 3.26027 3.34304 3.42613 3.51737 3.58949 3.69298 3.70454 3.73306 3.75570 3.77735 3.90933 3.95485 4.11937 4.16261 4.23355 4.31947 4.37150 4.47426 4.48892 4.56959 4.57330 4.63443 4.72086 4.80159 4.88077 4.94999 4.98876 4.99427 5.07126 5.09563 5.18215 5.23686 5.34292 5.41018 5.58580 6.24462 6.39847 6.62010 6.70377 6.93699 Molecular weight = 357.17amu Principal moments of inertia in cm(-1) A = 0.021848 B = 0.001792 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.270781 B =15619.925460 C =16536.482926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 H 0.442 0.558 3 H 0.450 0.550 4 H 0.451 0.549 5 C 0.053 3.947 6 H 0.158 0.842 7 C -0.139 4.139 8 C -0.133 4.133 9 C 0.133 3.867 10 H 0.073 0.927 11 N -0.708 5.708 12 C 0.578 3.422 13 O -0.563 6.563 14 C -0.254 4.254 15 C 0.201 3.799 16 N -0.524 5.524 17 C 0.380 3.620 18 C -0.121 4.121 19 C 0.153 3.847 20 N -0.503 5.503 21 C 0.122 3.878 22 C -0.175 4.175 23 C -0.066 4.066 24 O -0.542 6.542 25 Si 0.754 3.246 26 C 0.006 3.994 27 N -0.531 5.531 28 C 0.205 3.795 29 C -0.126 4.126 30 C -0.138 4.138 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.415 0.585 36 H 0.219 0.781 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.138 0.862 40 H 0.387 0.613 41 H -0.298 1.298 42 H -0.279 1.279 43 H 0.160 0.840 44 H 0.189 0.811 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 17.261 42.102 45.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.021 5.021 2 H 0.272 0.728 3 H 0.281 0.719 4 H 0.283 0.717 5 C -0.053 4.053 6 H 0.176 0.824 7 C -0.177 4.177 8 C -0.173 4.173 9 C 0.030 3.970 10 H 0.092 0.908 11 N -0.360 5.360 12 C 0.364 3.636 13 O -0.442 6.442 14 C -0.261 4.261 15 C 0.034 3.966 16 N -0.237 5.237 17 C 0.117 3.883 18 C -0.125 4.125 19 C -0.006 4.006 20 N -0.211 5.211 21 C -0.034 4.034 22 C -0.177 4.177 23 C -0.176 4.176 24 O -0.351 6.351 25 Si 0.660 3.340 26 C -0.021 4.021 27 N -0.244 5.244 28 C 0.039 3.961 29 C -0.164 4.164 30 C -0.177 4.177 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.253 0.747 36 H 0.235 0.765 37 H 0.192 0.808 38 H 0.193 0.807 39 H 0.156 0.844 40 H 0.237 0.763 41 H -0.225 1.225 42 H -0.206 1.206 43 H 0.178 0.822 44 H 0.206 0.794 45 H 0.092 0.908 46 H 0.114 0.886 47 H 0.109 0.891 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.223 16.745 40.095 43.656 hybrid contribution -0.673 1.237 0.899 1.670 sum 3.550 17.982 40.994 44.905 Atomic orbital electron populations 1.42256 1.21972 1.21110 1.16749 0.72792 0.71891 0.71683 1.22875 1.04874 0.93261 0.84287 0.82416 1.21944 1.03172 1.00699 0.91901 1.21859 1.02393 0.94362 0.98640 1.21359 0.99689 0.92162 0.83823 0.90840 1.45852 1.29171 1.52120 1.08874 1.17629 0.83049 0.79767 0.83179 1.90833 1.25902 1.42231 1.85276 1.21840 1.01048 1.05889 0.97331 1.24081 0.90075 0.85325 0.97165 1.68405 1.32821 1.22948 0.99541 1.21279 0.86563 0.89124 0.91334 1.19210 0.98578 1.02489 0.92219 1.23265 0.98059 0.93007 0.86310 1.67879 1.14386 1.08663 1.30172 1.23262 0.89555 0.92671 0.97943 1.21341 0.99924 1.02082 0.94340 1.25014 0.82233 0.95662 1.14699 1.86598 1.46688 1.47489 1.54281 0.94118 0.85935 0.81284 0.72699 1.21736 0.91877 0.89363 0.99098 1.68462 1.13405 1.09882 1.32645 1.23728 0.97019 0.89334 0.86053 1.21768 1.03150 0.99881 0.91648 1.21997 1.03427 0.92732 0.99505 0.87664 0.89375 0.93843 0.89559 0.74681 0.76484 0.80831 0.80736 0.84436 0.76334 1.22543 1.20596 0.82239 0.79434 0.90756 0.88563 0.89051 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.36 4.15 -168.67 -0.70 47.66 16 2 H 0.44 -35.14 8.90 -89.69 -0.80 -35.94 16 3 H 0.45 -36.49 8.96 -89.69 -0.80 -37.29 16 4 H 0.45 -37.05 8.96 -89.69 -0.80 -37.85 16 5 C 0.05 -3.49 3.02 44.92 0.14 -3.35 16 6 H 0.16 -10.70 8.14 -2.39 -0.02 -10.72 16 7 C -0.14 7.63 5.43 30.59 0.17 7.80 16 8 C -0.13 5.62 5.49 30.60 0.17 5.79 16 9 C 0.13 -5.24 2.45 44.99 0.11 -5.13 16 10 H 0.07 -2.49 7.57 -2.39 -0.02 -2.51 16 11 N -0.71 23.49 5.03 -445.56 -2.24 21.25 16 12 C 0.58 -13.10 7.75 86.74 0.67 -12.43 16 13 O -0.56 8.28 16.10 -3.95 -0.06 8.22 16 14 C -0.25 5.12 5.91 -19.88 -0.12 5.00 16 15 C 0.20 -4.58 10.80 85.13 0.92 -3.66 16 16 N -0.52 7.96 9.50 -188.16 -1.79 6.17 16 17 C 0.38 -4.16 7.56 137.42 1.04 -3.12 16 18 C -0.12 1.19 5.89 -19.95 -0.12 1.07 16 19 C 0.15 -1.23 10.73 84.99 0.91 -0.32 16 20 N -0.50 3.28 10.35 -194.85 -2.02 1.26 16 21 C 0.12 -1.31 9.84 84.71 0.83 -0.47 16 22 C -0.17 2.23 5.35 -19.81 -0.11 2.13 16 23 C -0.07 0.96 2.82 71.23 0.20 1.16 16 24 O -0.54 6.32 12.84 -148.98 -1.91 4.40 16 25 Si 0.75 -10.55 29.91 68.60 2.05 -8.50 16 26 C 0.01 -0.08 9.34 22.70 0.21 0.14 16 27 N -0.53 5.67 9.45 -188.15 -1.78 3.89 16 28 C 0.21 -3.03 10.87 85.13 0.93 -2.10 16 29 C -0.13 6.03 5.39 30.61 0.17 6.19 16 30 C -0.14 8.10 5.43 30.61 0.17 8.27 16 31 H 0.10 -5.95 8.14 -2.39 -0.02 -5.97 16 32 H 0.09 -4.72 8.14 -2.39 -0.02 -4.74 16 33 H 0.04 -1.37 8.14 -2.39 -0.02 -1.39 16 34 H 0.09 -3.77 8.14 -2.39 -0.02 -3.79 16 35 H 0.42 -16.04 6.73 -92.70 -0.62 -16.66 16 36 H 0.22 -7.34 6.52 -2.91 -0.02 -7.36 16 37 H 0.17 -1.62 7.51 -2.91 -0.02 -1.65 16 38 H 0.18 -2.53 4.85 -2.91 -0.01 -2.54 16 39 H 0.14 -2.37 7.96 -2.39 -0.02 -2.39 16 40 H 0.39 -6.42 8.70 -74.06 -0.64 -7.07 16 41 H -0.30 1.74 7.11 99.48 0.71 2.44 16 42 H -0.28 2.76 7.01 99.48 0.70 3.46 16 43 H 0.16 -2.19 7.60 -2.91 -0.02 -2.22 16 44 H 0.19 -3.07 7.74 -2.91 -0.02 -3.09 16 45 H 0.07 -3.20 8.14 -2.39 -0.02 -3.22 16 46 H 0.10 -4.80 8.14 -2.39 -0.02 -4.82 16 47 H 0.09 -5.24 8.14 -2.39 -0.02 -5.26 16 48 H 0.12 -7.23 8.14 -2.39 -0.02 -7.25 16 Total: 1.00 -101.76 390.83 -4.75 -106.50 By element: Atomic # 1 Polarization: -195.23 SS G_CDS: -2.58 Total: -197.81 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 6.29 Total: 6.96 kcal Atomic # 7 Polarization: 88.76 SS G_CDS: -8.52 Total: 80.23 kcal Atomic # 8 Polarization: 14.60 SS G_CDS: -1.98 Total: 12.62 kcal Atomic # 14 Polarization: -10.55 SS G_CDS: 2.05 Total: -8.50 kcal Total: -101.76 -4.75 -106.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081518_17119452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.738 kcal (2) G-P(sol) polarization free energy of solvation -101.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds