Wall clock time and date at job start Mon Mar 8 2021 06:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00903 * 1 3 3 H 1.00905 * 109.46567 * 1 2 4 4 H 1.00901 * 109.47392 * 240.00864 * 1 2 3 5 5 C 1.46896 * 109.47465 * 119.99669 * 1 2 3 6 6 H 1.09002 * 109.47220 * 300.00631 * 5 1 2 7 7 C 1.52997 * 109.46848 * 60.00561 * 5 1 2 8 8 C 1.52999 * 109.47317 * 179.97438 * 7 5 1 9 9 C 1.53005 * 109.47159 * 300.00546 * 8 7 5 10 10 H 1.09002 * 109.46935 * 299.99411 * 9 8 7 11 11 N 1.46500 * 109.47094 * 179.97438 * 9 8 7 12 12 C 1.38551 * 120.00284 * 154.99496 * 11 9 8 13 13 C 1.39709 * 120.48095 * 359.72719 * 12 11 9 14 14 C 1.38215 * 118.49627 * 179.70770 * 13 12 11 15 15 N 1.32400 * 119.29686 * 0.56250 * 14 13 12 16 16 C 1.32588 * 120.92712 * 359.72609 * 15 14 13 17 17 C 1.48315 * 119.17848 * 180.02562 * 16 15 14 18 18 C 1.39766 * 120.54389 * 359.70003 * 17 16 15 19 19 C 1.38448 * 118.30759 * 179.71811 * 18 17 16 20 20 C 1.38277 * 119.28817 * 0.57484 * 19 18 17 21 21 C 1.50695 * 119.48300 * 179.70622 * 20 19 18 22 22 O 1.42899 * 109.47071 * 29.97522 * 21 20 19 23 23 Si 1.86294 * 109.47271 * 149.97586 * 21 20 19 24 24 N 1.31929 * 121.03324 * 359.67677 * 20 19 18 25 25 C 1.31706 * 121.85959 * 0.03129 * 24 20 19 26 26 N 1.32561 * 121.63643 * 359.96726 * 16 15 14 27 27 C 1.52997 * 109.47452 * 59.99536 * 9 8 7 28 28 C 1.53000 * 109.47053 * 180.02562 * 5 1 2 29 29 H 1.08996 * 109.47853 * 300.00000 * 7 5 1 30 30 H 1.09002 * 109.47153 * 60.00028 * 7 5 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 8 7 5 32 32 H 1.09000 * 109.47486 * 180.02562 * 8 7 5 33 33 H 0.97002 * 120.00110 * 335.00521 * 11 9 8 34 34 H 1.08005 * 120.75349 * 359.97438 * 13 12 11 35 35 H 1.08002 * 120.35073 * 180.26245 * 14 13 12 36 36 H 1.08004 * 120.84285 * 359.97438 * 18 17 16 37 37 H 1.08003 * 120.35763 * 180.27717 * 19 18 17 38 38 H 1.08999 * 109.46883 * 269.97713 * 21 20 19 39 39 H 0.96693 * 114.00162 * 59.99998 * 22 21 20 40 40 H 1.48501 * 109.99931 * 179.97438 * 23 21 20 41 41 H 1.48499 * 110.00317 * 301.31682 * 23 21 20 42 42 H 1.07999 * 119.70229 * 179.97438 * 25 24 20 43 43 H 1.09002 * 109.46695 * 59.99734 * 27 9 8 44 44 H 1.08993 * 109.47194 * 179.97438 * 27 9 8 45 45 H 1.08992 * 109.47399 * 300.00238 * 28 5 1 46 46 H 1.09004 * 109.46724 * 60.00724 * 28 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9514 0.0000 4 1 -0.3364 -0.4755 0.8239 5 6 -0.4897 -0.6924 -1.1994 6 1 -0.1263 -0.1786 -2.0894 7 6 0.0201 -2.1349 -1.1994 8 6 -0.4904 -2.8564 -2.4483 9 6 -2.0205 -2.8561 -2.4477 10 1 -2.3835 -3.3698 -1.5575 11 7 -2.5093 -3.5464 -3.6439 12 6 -3.7655 -4.1308 -3.6418 13 6 -4.5722 -4.0728 -2.5026 14 6 -5.8206 -4.6643 -2.5477 15 7 -6.2088 -5.2741 -3.6569 16 6 -5.4200 -5.3191 -4.7217 17 6 -5.8943 -6.0121 -5.9442 18 6 -7.1541 -6.6167 -5.9745 19 6 -7.5525 -7.2457 -7.1417 20 6 -6.6946 -7.2660 -8.2260 21 6 -7.1212 -7.9553 -9.4964 22 8 -8.5423 -7.8791 -9.6255 23 14 -6.3194 -7.1197 -10.9556 24 7 -5.5088 -6.6910 -8.1659 25 6 -5.0886 -6.0760 -7.0797 26 7 -4.2185 -4.7591 -4.7210 27 6 -2.5303 -1.4136 -2.4478 28 6 -2.0197 -0.6918 -1.1996 29 1 1.1101 -2.1351 -1.1994 30 1 -0.3433 -2.6487 -0.3094 31 1 -0.1274 -2.3427 -3.3385 32 1 -0.1276 -3.8842 -2.4481 33 1 -1.9534 -3.5944 -4.4374 34 1 -4.2299 -3.5733 -1.6083 35 1 -6.4705 -4.6337 -1.6857 36 1 -7.8019 -6.5901 -5.1107 37 1 -8.5211 -7.7196 -7.2031 38 1 -6.8149 -9.0008 -9.4629 39 1 -8.8861 -6.9761 -9.6616 40 1 -6.7316 -7.7905 -12.2147 41 1 -6.7037 -5.6858 -10.9942 42 1 -4.1110 -5.6173 -7.0687 43 1 -2.1672 -0.9000 -3.3380 44 1 -3.6203 -1.4135 -2.4478 45 1 -2.3834 -1.2053 -0.3097 46 1 -2.3826 0.3361 -1.1999 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081524_17085348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:53:47 Heat of formation + Delta-G solvation = 137.643723 kcal Electronic energy + Delta-G solvation = -27219.143441 eV Core-core repulsion = 23420.488840 eV Total energy + Delta-G solvation = -3798.654601 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.172 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.22963 -41.36675 -40.94779 -38.40907 -37.98145 -35.67723 -34.68033 -33.65691 -32.66516 -32.05201 -31.29315 -29.02270 -27.92353 -25.59022 -24.78932 -24.27475 -23.86615 -23.29716 -22.27553 -21.41797 -19.33344 -18.94589 -18.75245 -18.49720 -18.27971 -17.51168 -17.26720 -17.04662 -16.68003 -16.50937 -16.36673 -16.19456 -16.13172 -15.41613 -15.33404 -14.99509 -14.66263 -14.56910 -14.35225 -14.17882 -14.09242 -13.84989 -13.40835 -13.34684 -12.86146 -12.74390 -12.66877 -12.34968 -12.23161 -12.10332 -11.81947 -11.66270 -11.51103 -11.38134 -11.02061 -10.79034 -10.66216 -10.28066 -9.83572 -9.16535 -4.79555 -0.79999 0.13680 0.31595 0.48100 1.30679 1.56343 1.64778 1.87235 1.88938 2.49116 2.68912 2.98269 3.02234 3.12070 3.23895 3.25555 3.29462 3.60378 3.65275 3.73083 3.76375 3.86385 3.88452 3.95219 4.05134 4.09328 4.12174 4.16767 4.22953 4.37277 4.38080 4.46810 4.51828 4.53684 4.62004 4.63324 4.70194 4.70379 4.85888 4.95619 5.01664 5.05866 5.09625 5.10012 5.14180 5.23943 5.33493 5.47704 5.74325 6.13348 6.33710 6.50622 6.74188 7.15722 Molecular weight = 329.17amu Principal moments of inertia in cm(-1) A = 0.025230 B = 0.002297 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.535326 B =12186.870355 C =12921.617647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.450 0.550 3 H 0.450 0.550 4 H 0.444 0.556 5 C 0.049 3.951 6 H 0.148 0.852 7 C -0.135 4.135 8 C -0.127 4.127 9 C 0.141 3.859 10 H 0.095 0.905 11 N -0.704 5.704 12 C 0.430 3.570 13 C -0.282 4.282 14 C 0.163 3.837 15 N -0.578 5.578 16 C 0.392 3.608 17 C -0.111 4.111 18 C -0.026 4.026 19 C -0.164 4.164 20 C 0.103 3.897 21 C -0.073 4.073 22 O -0.540 6.540 23 Si 0.787 3.213 24 N -0.487 5.487 25 C 0.153 3.847 26 N -0.590 5.590 27 C -0.138 4.138 28 C -0.137 4.137 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.409 0.591 34 H 0.180 0.820 35 H 0.194 0.806 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.142 0.858 39 H 0.388 0.612 40 H -0.297 1.297 41 H -0.301 1.301 42 H 0.182 0.818 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.103 0.897 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.348 25.571 29.791 46.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.282 0.718 3 H 0.281 0.719 4 H 0.274 0.726 5 C -0.057 4.057 6 H 0.166 0.834 7 C -0.173 4.173 8 C -0.166 4.166 9 C 0.037 3.963 10 H 0.113 0.887 11 N -0.336 5.336 12 C 0.184 3.816 13 C -0.309 4.309 14 C 0.003 3.997 15 N -0.297 5.297 16 C 0.125 3.875 17 C -0.116 4.116 18 C -0.053 4.053 19 C -0.184 4.184 20 C -0.034 4.034 21 C -0.183 4.183 22 O -0.347 6.347 23 Si 0.692 3.308 24 N -0.198 5.198 25 C -0.006 4.006 26 N -0.315 5.315 27 C -0.178 4.178 28 C -0.175 4.175 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.245 0.755 34 H 0.197 0.803 35 H 0.210 0.790 36 H 0.173 0.827 37 H 0.174 0.826 38 H 0.159 0.841 39 H 0.238 0.762 40 H -0.225 1.225 41 H -0.228 1.228 42 H 0.199 0.801 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.122 0.878 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 25.488 24.872 27.559 45.030 hybrid contribution -1.491 0.589 1.218 2.013 sum 23.996 25.461 28.776 45.301 Atomic orbital electron populations 1.42245 1.22118 1.20937 1.16737 0.71826 0.71892 0.72579 1.22867 0.96698 0.96042 0.90050 0.83386 1.21955 1.03709 0.92508 0.99116 1.21716 0.91993 1.02555 1.00350 1.21504 0.95347 0.92496 0.86943 0.88723 1.44758 1.13087 1.57541 1.18183 1.18765 0.87440 0.86685 0.88668 1.22489 0.97106 1.10571 1.00776 1.23490 0.94065 0.87261 0.94931 1.68318 1.36954 1.22943 1.01488 1.20579 0.85283 0.90314 0.91356 1.19253 0.96566 1.02630 0.93106 1.21908 0.94274 0.90837 0.98258 1.21999 1.02504 1.01293 0.92585 1.21993 0.90444 0.94309 0.96620 1.25066 0.85312 1.07212 1.00726 1.86594 1.18938 1.34004 1.95138 0.92828 0.90685 0.74869 0.72411 1.67004 1.15321 1.09886 1.27567 1.23104 0.99538 0.91988 0.86014 1.67713 1.16580 1.17139 1.30038 1.21961 1.01440 0.94611 0.99748 1.21960 0.92257 1.03983 0.99288 0.87141 0.87982 0.90079 0.91317 0.75469 0.80286 0.78960 0.82684 0.82589 0.84080 0.76204 1.22487 1.22793 0.80149 0.91057 0.92334 0.87823 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 49.41 4.15 -168.69 -0.70 48.71 16 2 H 0.45 -37.37 8.96 -89.69 -0.80 -38.18 16 3 H 0.45 -37.21 8.96 -89.69 -0.80 -38.02 16 4 H 0.44 -36.52 8.90 -89.69 -0.80 -37.32 16 5 C 0.05 -3.34 3.02 44.92 0.14 -3.20 16 6 H 0.15 -9.99 8.14 -2.39 -0.02 -10.01 16 7 C -0.13 8.07 5.43 30.59 0.17 8.24 16 8 C -0.13 6.05 5.39 30.60 0.16 6.21 16 9 C 0.14 -5.97 2.16 44.99 0.10 -5.87 16 10 H 0.09 -4.09 6.49 -2.39 -0.02 -4.11 16 11 N -0.70 21.74 5.23 -324.09 -1.69 20.05 16 12 C 0.43 -9.39 7.69 133.22 1.02 -8.36 16 13 C -0.28 7.11 8.95 22.62 0.20 7.32 16 14 C 0.16 -3.21 11.28 84.60 0.95 -2.25 16 15 N -0.58 6.71 9.52 -189.42 -1.80 4.90 16 16 C 0.39 -4.04 7.56 137.55 1.04 -3.00 16 17 C -0.11 1.01 5.89 -19.95 -0.12 0.89 16 18 C -0.03 0.25 9.68 22.69 0.22 0.47 16 19 C -0.16 1.61 9.37 22.33 0.21 1.82 16 20 C 0.10 -0.88 6.08 42.55 0.26 -0.62 16 21 C -0.07 0.70 2.98 71.23 0.21 0.91 16 22 O -0.54 4.52 11.84 -148.98 -1.76 2.76 16 23 Si 0.79 -6.53 31.87 68.60 2.19 -4.34 16 24 N -0.49 3.86 8.35 -182.99 -1.53 2.34 16 25 C 0.15 -1.45 10.74 84.98 0.91 -0.54 16 26 N -0.59 8.26 9.51 -186.75 -1.78 6.48 16 27 C -0.14 6.31 5.47 30.58 0.17 6.48 16 28 C -0.14 8.09 5.43 30.58 0.17 8.25 16 29 H 0.11 -6.79 8.14 -2.39 -0.02 -6.81 16 30 H 0.10 -6.23 8.14 -2.39 -0.02 -6.25 16 31 H 0.08 -3.76 8.14 -2.39 -0.02 -3.78 16 32 H 0.07 -2.84 8.14 -2.39 -0.02 -2.86 16 33 H 0.41 -12.26 8.73 -92.71 -0.81 -13.07 16 34 H 0.18 -6.21 6.33 -2.91 -0.02 -6.23 16 35 H 0.19 -5.01 8.06 -2.91 -0.02 -5.03 16 36 H 0.16 -1.75 7.60 -2.91 -0.02 -1.77 16 37 H 0.16 -1.87 7.47 -2.91 -0.02 -1.89 16 38 H 0.14 -1.64 7.96 -2.39 -0.02 -1.66 16 39 H 0.39 -5.40 8.70 -74.06 -0.64 -6.04 16 40 H -0.30 0.58 7.11 99.48 0.71 1.29 16 41 H -0.30 0.81 7.11 99.48 0.71 1.52 16 42 H 0.18 -2.29 7.52 -2.91 -0.02 -2.31 16 43 H 0.07 -3.07 8.14 -2.39 -0.02 -3.09 16 44 H 0.06 -2.26 7.80 -2.39 -0.02 -2.28 16 45 H 0.10 -6.32 8.14 -2.39 -0.02 -6.34 16 46 H 0.10 -6.29 8.14 -2.39 -0.02 -6.31 16 Total: 1.00 -98.90 370.42 -4.03 -102.93 By element: Atomic # 1 Polarization: -197.78 SS G_CDS: -2.76 Total: -200.55 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 5.81 Total: 16.73 kcal Atomic # 7 Polarization: 89.97 SS G_CDS: -7.50 Total: 82.47 kcal Atomic # 8 Polarization: 4.52 SS G_CDS: -1.76 Total: 2.76 kcal Atomic # 14 Polarization: -6.53 SS G_CDS: 2.19 Total: -4.34 kcal Total: -98.90 -4.03 -102.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081524_17085348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.569 kcal (2) G-P(sol) polarization free energy of solvation -98.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds