Wall clock time and date at job start Mon Mar 8 2021 07:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00898 * 1 3 3 H 1.00901 * 109.46544 * 1 2 4 4 H 1.00906 * 109.47057 * 240.00869 * 1 2 3 5 5 C 1.46899 * 109.47577 * 120.00755 * 1 2 3 6 6 H 1.09002 * 109.46935 * 300.00038 * 5 1 2 7 7 C 1.52996 * 109.47092 * 59.99793 * 5 1 2 8 8 C 1.52999 * 109.46825 * 180.02562 * 7 5 1 9 9 C 1.52998 * 109.47246 * 300.00101 * 8 7 5 10 10 H 1.08995 * 109.47238 * 299.99737 * 9 8 7 11 11 N 1.46507 * 109.47021 * 180.02562 * 9 8 7 12 12 C 1.38992 * 119.99780 * 155.00194 * 11 9 8 13 13 C 1.39348 * 120.02995 * 359.97438 * 12 11 9 14 14 N 1.32015 * 120.11562 * 179.97438 * 13 12 11 15 15 C 1.32086 * 120.18395 * 0.02638 * 14 13 12 16 16 C 1.39321 * 120.05867 * 0.02562 * 15 14 13 17 17 C 1.48325 * 120.05861 * 179.97438 * 16 15 14 18 18 C 1.39759 * 120.54211 * 0.22611 * 17 16 15 19 19 C 1.38446 * 118.31043 * 180.20222 * 18 17 16 20 20 C 1.38282 * 119.28588 * 359.52672 * 19 18 17 21 21 C 1.50696 * 119.48026 * 180.25615 * 20 19 18 22 22 O 1.42900 * 109.47497 * 30.00126 * 21 20 19 23 23 Si 1.86301 * 109.46887 * 150.00121 * 21 20 19 24 24 N 1.31922 * 121.03287 * 0.27985 * 20 19 18 25 25 C 1.31707 * 121.86035 * 359.97438 * 24 20 19 26 26 N 1.32570 * 120.02689 * 180.27772 * 12 11 9 27 27 C 1.52997 * 109.46919 * 60.00176 * 9 8 7 28 28 C 1.52994 * 109.47417 * 299.99661 * 27 9 8 29 29 H 1.09002 * 109.47031 * 60.00303 * 7 5 1 30 30 H 1.08994 * 109.47286 * 299.99831 * 7 5 1 31 31 H 1.08999 * 109.47072 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47136 * 60.00285 * 8 7 5 33 33 H 0.96997 * 119.99816 * 334.99654 * 11 9 8 34 34 H 1.07994 * 119.94469 * 0.02562 * 13 12 11 35 35 H 1.08007 * 119.97040 * 179.97438 * 15 14 13 36 36 H 1.08004 * 120.84608 * 0.02562 * 18 17 16 37 37 H 1.08002 * 120.36068 * 179.81060 * 19 18 17 38 38 H 1.09005 * 109.47014 * 269.99872 * 21 20 19 39 39 H 0.96703 * 113.99935 * 59.99721 * 22 21 20 40 40 H 1.48497 * 110.00118 * 179.97438 * 23 21 20 41 41 H 1.48492 * 110.00080 * 301.31875 * 23 21 20 42 42 H 1.08001 * 119.70683 * 180.02562 * 25 24 20 43 43 H 1.09002 * 109.47209 * 59.99971 * 27 9 8 44 44 H 1.09006 * 109.46977 * 179.97438 * 27 9 8 45 45 H 1.09002 * 109.47184 * 300.00326 * 28 27 9 46 46 H 1.08999 * 109.47471 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3362 0.9513 0.0000 4 1 -0.3363 -0.4756 0.8240 5 6 -0.4898 -0.6926 -1.1993 6 1 -0.1265 -0.1789 -2.0894 7 6 0.0202 -2.1351 -1.1992 8 6 -0.4894 -2.8562 -2.4486 9 6 -2.0194 -2.8562 -2.4491 10 1 -2.3831 -3.3701 -1.5594 11 7 -2.5073 -3.5473 -3.6453 12 6 -3.7676 -4.1335 -3.6436 13 6 -4.5672 -4.0648 -2.5045 14 7 -5.7646 -4.6206 -2.5012 15 6 -6.2101 -5.2445 -3.5768 16 6 -5.4164 -5.3187 -4.7195 17 6 -5.9164 -6.0199 -5.9271 18 6 -7.1848 -6.6068 -5.9335 19 6 -7.6034 -7.2533 -7.0840 20 6 -6.7650 -7.2886 -8.1831 21 6 -7.2185 -7.9860 -9.4397 22 8 -8.6411 -7.9012 -9.5446 23 14 -6.4368 -7.1687 -10.9201 24 7 -5.5743 -6.7217 -8.1487 25 6 -5.1310 -6.1000 -7.0756 26 7 -4.2075 -4.7638 -4.7238 27 6 -2.5293 -1.4137 -2.4493 28 6 -2.0198 -0.6925 -1.1999 29 1 -0.3431 -2.6488 -0.3091 30 1 1.1101 -2.1351 -1.1993 31 1 -0.1265 -3.8840 -2.4483 32 1 -0.1257 -2.3424 -3.3385 33 1 -1.9509 -3.5956 -4.4383 34 1 -4.2071 -3.5553 -1.6230 35 1 -7.1902 -5.6984 -3.5702 36 1 -7.8211 -6.5599 -5.0620 37 1 -8.5760 -7.7209 -7.1242 38 1 -6.9187 -9.0333 -9.4023 39 1 -8.9794 -6.9961 -9.5827 40 1 -6.8756 -7.8476 -12.1658 41 1 -6.8120 -5.7326 -10.9646 42 1 -4.1503 -5.6477 -7.0859 43 1 -2.1656 -0.8998 -3.3391 44 1 -3.6193 -1.4136 -2.4501 45 1 -2.3835 -1.2063 -0.3100 46 1 -2.3834 0.3351 -1.1997 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081524_17085452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:03:10 Heat of formation + Delta-G solvation = 136.334755 kcal Electronic energy + Delta-G solvation = -27218.156271 eV Core-core repulsion = 23419.444908 eV Total energy + Delta-G solvation = -3798.711363 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.172 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.34640 -41.38427 -40.95469 -38.34472 -37.99274 -35.72245 -35.36553 -33.74353 -32.63817 -32.02472 -30.81715 -28.85108 -27.85786 -25.89039 -24.88745 -24.22675 -23.82612 -23.30960 -22.31513 -21.40709 -19.23573 -18.99846 -18.64004 -18.44609 -18.25996 -17.83390 -17.42495 -17.19786 -17.04237 -16.54559 -16.35351 -16.27701 -16.19964 -15.39326 -15.30194 -15.01359 -14.65906 -14.51414 -14.28313 -14.16786 -13.82739 -13.73733 -13.38258 -13.34329 -12.81390 -12.75676 -12.63764 -12.56270 -12.43989 -12.23434 -12.12329 -12.01700 -11.52930 -11.35702 -11.06742 -10.84321 -10.71851 -10.12521 -9.84241 -8.87434 -4.81034 -0.86865 0.12882 0.18710 0.44208 1.29964 1.57106 1.62715 1.86922 1.87648 2.47800 2.82694 2.88321 3.04426 3.12940 3.23410 3.26823 3.32286 3.36870 3.63935 3.67487 3.69668 3.76310 3.86501 3.88137 3.94299 4.06210 4.11064 4.13510 4.15619 4.24339 4.38391 4.38896 4.50607 4.52811 4.62454 4.63140 4.71109 4.72181 4.85196 4.93682 4.96991 5.02678 5.07174 5.11115 5.14936 5.25930 5.31157 5.48820 5.73151 6.25776 6.33600 6.47137 6.75755 6.87131 Molecular weight = 329.17amu Principal moments of inertia in cm(-1) A = 0.025637 B = 0.002285 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.898479 B =12251.448011 C =12967.798472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.450 0.550 3 H 0.450 0.550 4 H 0.444 0.556 5 C 0.050 3.950 6 H 0.150 0.850 7 C -0.135 4.135 8 C -0.126 4.126 9 C 0.140 3.860 10 H 0.093 0.907 11 N -0.706 5.706 12 C 0.363 3.637 13 C -0.009 4.009 14 N -0.420 5.420 15 C -0.021 4.021 16 C 0.172 3.828 17 C -0.112 4.112 18 C -0.044 4.044 19 C -0.157 4.157 20 C 0.097 3.903 21 C -0.071 4.071 22 O -0.539 6.539 23 Si 0.781 3.219 24 N -0.488 5.488 25 C 0.143 3.857 26 N -0.522 5.522 27 C -0.139 4.139 28 C -0.138 4.138 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.409 0.591 34 H 0.195 0.805 35 H 0.179 0.821 36 H 0.169 0.831 37 H 0.159 0.841 38 H 0.141 0.859 39 H 0.389 0.611 40 H -0.298 1.298 41 H -0.301 1.301 42 H 0.175 0.825 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.102 0.898 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.839 24.538 27.692 44.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.021 5.021 2 H 0.282 0.718 3 H 0.281 0.719 4 H 0.274 0.726 5 C -0.056 4.056 6 H 0.167 0.833 7 C -0.174 4.174 8 C -0.165 4.165 9 C 0.036 3.964 10 H 0.111 0.889 11 N -0.338 5.338 12 C 0.120 3.880 13 C -0.178 4.178 14 N -0.132 5.132 15 C -0.180 4.180 16 C 0.033 3.967 17 C -0.115 4.115 18 C -0.071 4.071 19 C -0.177 4.177 20 C -0.040 4.040 21 C -0.181 4.181 22 O -0.346 6.346 23 Si 0.687 3.313 24 N -0.199 5.199 25 C -0.016 4.016 26 N -0.245 5.245 27 C -0.179 4.179 28 C -0.176 4.176 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.246 0.754 34 H 0.212 0.788 35 H 0.196 0.804 36 H 0.186 0.814 37 H 0.176 0.824 38 H 0.158 0.842 39 H 0.238 0.762 40 H -0.226 1.226 41 H -0.228 1.228 42 H 0.192 0.808 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.120 0.880 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 25.224 24.229 26.195 43.697 hybrid contribution -1.683 0.195 0.372 1.734 sum 23.541 24.423 26.568 43.087 Atomic orbital electron populations 1.42247 1.22110 1.20934 1.16764 0.71819 0.71904 0.72601 1.22869 0.96596 0.96077 0.90067 0.83261 1.21964 1.03741 0.92500 0.99154 1.21704 0.91815 1.02614 1.00340 1.21509 0.95569 0.92461 0.86872 0.88934 1.44745 1.12881 1.57950 1.18206 1.19512 0.88726 0.89778 0.89935 1.23635 0.91193 1.03888 0.99112 1.68245 1.13518 1.04403 1.27066 1.23532 1.02650 1.02544 0.89310 1.20141 0.89641 0.93529 0.93369 1.19476 0.96225 1.01931 0.93899 1.22008 0.93999 0.92021 0.99035 1.22000 1.02479 1.00643 0.92570 1.21953 0.90610 0.94781 0.96648 1.24994 0.85003 1.06920 1.01197 1.86601 1.18746 1.33923 1.95353 0.92865 0.90839 0.75002 0.72621 1.66945 1.14668 1.09687 1.28596 1.23086 0.99728 0.92301 0.86492 1.67775 1.14947 1.13570 1.28246 1.21986 1.01328 0.94711 0.99836 1.21975 0.92365 1.04005 0.99272 0.88048 0.87072 0.91228 0.89926 0.75405 0.78831 0.80368 0.81406 0.82353 0.84189 0.76191 1.22639 1.22834 0.80756 0.90746 0.92538 0.87963 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 49.13 4.15 -168.68 -0.70 48.43 16 2 H 0.45 -37.22 8.96 -89.70 -0.80 -38.03 16 3 H 0.45 -36.99 8.96 -89.69 -0.80 -37.80 16 4 H 0.44 -36.22 8.90 -89.69 -0.80 -37.02 16 5 C 0.05 -3.35 3.02 44.92 0.14 -3.21 16 6 H 0.15 -10.05 8.14 -2.39 -0.02 -10.07 16 7 C -0.14 8.07 5.43 30.59 0.17 8.24 16 8 C -0.13 5.97 5.39 30.59 0.16 6.14 16 9 C 0.14 -5.87 2.14 44.99 0.10 -5.77 16 10 H 0.09 -3.93 6.46 -2.39 -0.02 -3.95 16 11 N -0.71 21.85 5.25 -324.23 -1.70 20.15 16 12 C 0.36 -7.89 7.64 133.07 1.02 -6.88 16 13 C -0.01 0.20 10.01 84.93 0.85 1.05 16 14 N -0.42 6.48 10.48 -193.80 -2.03 4.44 16 15 C -0.02 0.32 10.61 84.92 0.90 1.22 16 16 C 0.17 -2.40 6.73 41.91 0.28 -2.12 16 17 C -0.11 1.47 5.89 -19.95 -0.12 1.35 16 18 C -0.04 0.68 9.53 22.69 0.22 0.90 16 19 C -0.16 2.09 9.37 22.33 0.21 2.30 16 20 C 0.10 -1.01 6.07 42.55 0.26 -0.75 16 21 C -0.07 0.76 2.98 71.23 0.21 0.97 16 22 O -0.54 5.25 11.84 -148.98 -1.76 3.48 16 23 Si 0.78 -6.85 31.88 68.60 2.19 -4.66 16 24 N -0.49 4.56 8.35 -182.99 -1.53 3.04 16 25 C 0.14 -1.62 10.75 84.98 0.91 -0.71 16 26 N -0.52 8.07 9.67 -181.71 -1.76 6.32 16 27 C -0.14 6.29 5.43 30.59 0.17 6.45 16 28 C -0.14 8.06 5.43 30.59 0.17 8.22 16 29 H 0.10 -6.13 8.14 -2.39 -0.02 -6.15 16 30 H 0.11 -6.82 8.14 -2.39 -0.02 -6.84 16 31 H 0.07 -2.89 8.14 -2.39 -0.02 -2.91 16 32 H 0.08 -3.85 8.14 -2.39 -0.02 -3.87 16 33 H 0.41 -12.44 8.73 -92.71 -0.81 -13.25 16 34 H 0.20 -5.99 6.08 -2.91 -0.02 -6.01 16 35 H 0.18 -3.38 6.26 -2.91 -0.02 -3.40 16 36 H 0.17 -3.54 6.32 -2.91 -0.02 -3.56 16 37 H 0.16 -2.46 7.47 -2.91 -0.02 -2.49 16 38 H 0.14 -1.76 7.96 -2.38 -0.02 -1.78 16 39 H 0.39 -5.95 8.70 -74.06 -0.64 -6.60 16 40 H -0.30 0.64 7.11 99.48 0.71 1.35 16 41 H -0.30 0.95 7.11 99.48 0.71 1.65 16 42 H 0.18 -2.38 7.56 -2.91 -0.02 -2.40 16 43 H 0.07 -3.21 8.14 -2.39 -0.02 -3.23 16 44 H 0.06 -2.13 7.68 -2.38 -0.02 -2.15 16 45 H 0.10 -6.11 8.14 -2.39 -0.02 -6.13 16 46 H 0.10 -6.22 8.14 -2.39 -0.02 -6.24 16 Total: 1.00 -97.84 367.46 -4.41 -102.25 By element: Atomic # 1 Polarization: -198.11 SS G_CDS: -2.75 Total: -200.86 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 5.64 Total: 17.41 kcal Atomic # 7 Polarization: 90.10 SS G_CDS: -7.72 Total: 82.38 kcal Atomic # 8 Polarization: 5.25 SS G_CDS: -1.76 Total: 3.48 kcal Atomic # 14 Polarization: -6.85 SS G_CDS: 2.19 Total: -4.66 kcal Total: -97.84 -4.41 -102.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081524_17085452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.583 kcal (2) G-P(sol) polarization free energy of solvation -97.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds