Wall clock time and date at job start Mon Mar 8 2021 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00898 * 1 3 3 H 1.00901 * 109.47344 * 1 2 4 4 H 1.00897 * 109.47614 * 239.99449 * 1 2 3 5 5 C 1.46899 * 109.47159 * 119.99433 * 1 2 3 6 6 H 1.09000 * 109.47162 * 300.00526 * 5 1 2 7 7 C 1.53006 * 109.47163 * 60.00488 * 5 1 2 8 8 C 1.52997 * 109.47164 * 179.97438 * 7 5 1 9 9 C 1.53002 * 109.47415 * 300.00027 * 8 7 5 10 10 H 1.08996 * 109.46550 * 300.00288 * 9 8 7 11 11 N 1.46500 * 109.47089 * 179.97438 * 9 8 7 12 12 C 1.38003 * 119.99674 * 154.99704 * 11 9 8 13 13 N 1.33070 * 120.04182 * 359.72388 * 12 11 9 14 14 C 1.32143 * 120.10649 * 179.76532 * 13 12 11 15 15 N 1.32141 * 120.18702 * 0.51398 * 14 13 12 16 16 C 1.33169 * 120.07822 * 359.74071 * 15 14 13 17 17 C 1.48262 * 120.05393 * 179.97438 * 16 15 14 18 18 C 1.39794 * 120.54246 * 359.74784 * 17 16 15 19 19 C 1.38443 * 118.30451 * 179.73508 * 18 17 16 20 20 C 1.38281 * 119.28716 * 0.55917 * 19 18 17 21 21 C 1.50707 * 119.47814 * 179.72063 * 20 19 18 22 22 O 1.42892 * 109.46897 * 29.97921 * 21 20 19 23 23 Si 1.86303 * 109.46900 * 149.97663 * 21 20 19 24 24 N 1.31932 * 121.04662 * 359.70036 * 20 19 18 25 25 C 1.31708 * 121.85651 * 0.02562 * 24 20 19 26 26 N 1.32882 * 120.03916 * 180.02562 * 12 11 9 27 27 C 1.52996 * 109.46972 * 59.99860 * 9 8 7 28 28 C 1.52997 * 109.47165 * 300.00293 * 27 9 8 29 29 H 1.09001 * 109.46998 * 299.99678 * 7 5 1 30 30 H 1.09000 * 109.47050 * 59.99970 * 7 5 1 31 31 H 1.09000 * 109.47140 * 60.00051 * 8 7 5 32 32 H 1.09001 * 109.47230 * 179.97438 * 8 7 5 33 33 H 0.96992 * 120.00233 * 335.00422 * 11 9 8 34 34 H 1.07997 * 119.91097 * 180.25544 * 14 13 12 35 35 H 1.07997 * 120.85013 * 0.02562 * 18 17 16 36 36 H 1.08002 * 120.36143 * 180.28026 * 19 18 17 37 37 H 1.08995 * 109.47106 * 269.97493 * 21 20 19 38 38 H 0.96709 * 114.00489 * 59.99965 * 22 21 20 39 39 H 1.48498 * 109.99738 * 179.97438 * 23 21 20 40 40 H 1.48495 * 110.00340 * 301.32127 * 23 21 20 41 41 H 1.08001 * 119.70352 * 180.02562 * 25 24 20 42 42 H 1.09000 * 109.47054 * 60.00300 * 27 9 8 43 43 H 1.09001 * 109.46997 * 180.02562 * 27 9 8 44 44 H 1.09000 * 109.47140 * 299.99954 * 28 27 9 45 45 H 1.09002 * 109.47045 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3364 -0.4757 0.8237 5 6 -0.4897 -0.6924 -1.1995 6 1 -0.1263 -0.1785 -2.0894 7 6 0.0202 -2.1350 -1.1996 8 6 -0.4903 -2.8563 -2.4485 9 6 -2.0203 -2.8562 -2.4480 10 1 -2.3832 -3.3699 -1.5579 11 7 -2.5091 -3.5463 -3.6443 12 6 -3.7603 -4.1285 -3.6421 13 7 -4.5213 -4.0682 -2.5522 14 6 -5.7215 -4.6211 -2.5502 15 7 -6.1673 -5.2449 -3.6264 16 6 -5.4100 -5.3141 -4.7196 17 6 -5.9106 -6.0146 -5.9266 18 6 -7.1746 -6.6117 -5.9284 19 6 -7.5980 -7.2488 -7.0823 20 6 -6.7602 -7.2840 -8.1819 21 6 -7.2141 -7.9818 -9.4381 22 8 -8.6368 -7.8979 -9.5420 23 14 -6.4341 -7.1641 -10.9192 24 7 -5.5698 -6.7160 -8.1488 25 6 -5.1260 -6.0940 -7.0760 26 7 -4.2043 -4.7551 -4.7266 27 6 -2.5302 -1.4137 -2.4479 28 6 -2.0197 -0.6924 -1.1990 29 1 1.1103 -2.1350 -1.1996 30 1 -0.3432 -2.6488 -0.3096 31 1 -0.1273 -2.3425 -3.3387 32 1 -0.1267 -3.8838 -2.4489 33 1 -1.9533 -3.5942 -4.4377 34 1 -6.3380 -4.5667 -1.6653 35 1 -7.8067 -6.5729 -5.0536 36 1 -8.5703 -7.7172 -7.1219 37 1 -6.9136 -9.0289 -9.4010 38 1 -8.9758 -6.9930 -9.5798 39 1 -6.8734 -7.8434 -12.1645 40 1 -6.8103 -5.7282 -10.9636 41 1 -4.1458 -5.6407 -7.0874 42 1 -2.1672 -0.9000 -3.3381 43 1 -3.6202 -1.4136 -2.4471 44 1 -2.3827 -1.2061 -0.3088 45 1 -2.3833 0.3352 -1.1987 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081524_17087578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:06:10 Heat of formation + Delta-G solvation = 159.650660 kcal Electronic energy + Delta-G solvation = -27337.922086 eV Core-core repulsion = 23474.795866 eV Total energy + Delta-G solvation = -3863.126220 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.167 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.79004 -41.46487 -41.07019 -38.46904 -38.03946 -35.92425 -35.49531 -33.76406 -32.93816 -32.49988 -32.00412 -29.26056 -28.21165 -26.20668 -25.09285 -24.48234 -24.06341 -23.36849 -22.53630 -21.51075 -19.89277 -19.42928 -18.88104 -18.56171 -18.30919 -17.53700 -17.46108 -17.19635 -16.91622 -16.69531 -16.49916 -16.41195 -15.78793 -15.41069 -15.26984 -15.19421 -14.96662 -14.74340 -14.39219 -14.20503 -14.13493 -13.91876 -13.42679 -13.40389 -12.99441 -12.78017 -12.71636 -12.40179 -12.38963 -12.24744 -12.10672 -11.59634 -11.41020 -11.14113 -10.95592 -10.87973 -10.80372 -10.58623 -9.94699 -9.71419 -4.79294 -0.97957 -0.00193 0.10010 0.37834 1.29907 1.44648 1.64774 1.66863 1.89660 2.35466 2.45364 2.77432 2.88419 2.96190 3.11012 3.19498 3.24413 3.28166 3.62251 3.70896 3.71486 3.81360 3.86989 3.92475 3.96293 4.05815 4.11545 4.14121 4.22221 4.36084 4.49230 4.51536 4.55890 4.62955 4.66517 4.70915 4.77238 4.88343 4.97872 4.98942 4.99347 5.06509 5.08514 5.21004 5.30200 5.30334 5.41432 5.49256 5.91998 6.30816 6.33400 6.69468 7.19996 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.002288 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.896113 B =12234.689467 C =12936.046609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.443 0.557 5 C 0.051 3.949 6 H 0.154 0.846 7 C -0.134 4.134 8 C -0.127 4.127 9 C 0.148 3.852 10 H 0.087 0.913 11 N -0.673 5.673 12 C 0.588 3.412 13 N -0.605 5.605 14 C 0.381 3.619 15 N -0.609 5.609 16 C 0.443 3.557 17 C -0.124 4.124 18 C -0.013 4.013 19 C -0.165 4.165 20 C 0.113 3.887 21 C -0.074 4.074 22 O -0.539 6.539 23 Si 0.786 3.214 24 N -0.488 5.488 25 C 0.164 3.836 26 N -0.614 5.614 27 C -0.130 4.130 28 C -0.135 4.135 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.422 0.578 34 H 0.240 0.760 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.144 0.856 38 H 0.389 0.611 39 H -0.298 1.298 40 H -0.300 1.300 41 H 0.184 0.816 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.096 0.904 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.621 24.240 27.038 43.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.283 0.717 3 H 0.281 0.719 4 H 0.273 0.727 5 C -0.055 4.055 6 H 0.171 0.829 7 C -0.173 4.173 8 C -0.166 4.166 9 C 0.044 3.956 10 H 0.105 0.895 11 N -0.310 5.310 12 C 0.223 3.777 13 N -0.335 5.335 14 C 0.084 3.916 15 N -0.335 5.335 16 C 0.168 3.832 17 C -0.129 4.129 18 C -0.041 4.041 19 C -0.185 4.185 20 C -0.024 4.024 21 C -0.184 4.184 22 O -0.346 6.346 23 Si 0.691 3.309 24 N -0.199 5.199 25 C 0.004 3.996 26 N -0.343 5.343 27 C -0.169 4.169 28 C -0.173 4.173 29 H 0.133 0.867 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.260 0.740 34 H 0.256 0.744 35 H 0.178 0.822 36 H 0.177 0.823 37 H 0.161 0.839 38 H 0.239 0.761 39 H -0.226 1.226 40 H -0.227 1.227 41 H 0.201 0.799 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.114 0.886 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 25.112 23.995 25.579 43.135 hybrid contribution -1.857 0.188 0.653 1.978 sum 23.255 24.183 26.233 42.588 Atomic orbital electron populations 1.42234 1.22122 1.20917 1.16703 0.71731 0.71871 0.72661 1.22864 0.96299 0.96095 0.90209 0.82882 1.21952 1.03825 0.92496 0.98978 1.21749 0.91526 1.02705 1.00629 1.21415 0.95021 0.92511 0.86623 0.89521 1.44474 1.11582 1.56184 1.18756 1.19682 0.88275 0.85158 0.84553 1.68662 1.08616 1.28181 1.28025 1.25868 0.88184 0.81954 0.95625 1.69037 1.37978 1.24464 1.01990 1.21062 0.84602 0.86457 0.91065 1.19146 0.97064 1.03858 0.92815 1.21953 0.93654 0.89904 0.98569 1.22026 1.02736 1.01303 0.92426 1.22068 0.90319 0.93540 0.96480 1.25074 0.85067 1.07116 1.01098 1.86606 1.18695 1.33990 1.95333 0.92837 0.90653 0.74974 0.72397 1.67059 1.14631 1.10042 1.28137 1.23164 0.99484 0.91139 0.85794 1.68457 1.17059 1.18475 1.30302 1.21842 1.00876 0.94496 0.99713 1.21926 0.92580 1.03722 0.99085 0.86653 0.88510 0.89409 0.91233 0.73956 0.74400 0.82201 0.82270 0.83871 0.76132 1.22617 1.22720 0.79864 0.90767 0.93443 0.88591 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.36 4.15 -168.67 -0.70 47.66 16 2 H 0.45 -36.95 8.96 -89.70 -0.80 -37.76 16 3 H 0.45 -36.58 8.96 -89.69 -0.80 -37.38 16 4 H 0.44 -35.53 8.90 -89.70 -0.80 -36.33 16 5 C 0.05 -3.37 3.03 44.92 0.14 -3.23 16 6 H 0.15 -10.19 8.14 -2.39 -0.02 -10.21 16 7 C -0.13 7.78 5.43 30.60 0.17 7.95 16 8 C -0.13 5.82 5.39 30.59 0.16 5.98 16 9 C 0.15 -5.67 2.47 44.99 0.11 -5.56 16 10 H 0.09 -3.06 7.53 -2.39 -0.02 -3.08 16 11 N -0.67 19.24 5.21 -330.05 -1.72 17.52 16 12 C 0.59 -11.39 8.45 261.25 2.21 -9.19 16 13 N -0.60 12.17 9.34 -202.57 -1.89 10.28 16 14 C 0.38 -7.13 12.40 180.68 2.24 -4.89 16 15 N -0.61 8.05 9.68 -193.54 -1.87 6.17 16 16 C 0.44 -5.27 7.60 137.25 1.04 -4.22 16 17 C -0.12 1.44 5.89 -19.96 -0.12 1.32 16 18 C -0.01 0.17 9.70 22.70 0.22 0.39 16 19 C -0.17 2.05 9.37 22.33 0.21 2.26 16 20 C 0.11 -1.21 6.08 42.56 0.26 -0.96 16 21 C -0.07 0.83 2.98 71.24 0.21 1.05 16 22 O -0.54 5.45 11.84 -148.98 -1.76 3.68 16 23 Si 0.79 -7.62 31.87 68.60 2.19 -5.44 16 24 N -0.49 4.98 8.35 -182.95 -1.53 3.45 16 25 C 0.16 -1.96 10.75 84.99 0.91 -1.05 16 26 N -0.61 8.84 9.67 -191.57 -1.85 6.99 16 27 C -0.13 5.41 5.50 30.59 0.17 5.58 16 28 C -0.13 7.50 5.43 30.59 0.17 7.66 16 29 H 0.12 -6.99 8.14 -2.39 -0.02 -7.01 16 30 H 0.10 -5.60 8.14 -2.39 -0.02 -5.62 16 31 H 0.09 -4.05 8.14 -2.39 -0.02 -4.07 16 32 H 0.07 -2.78 8.14 -2.39 -0.02 -2.80 16 33 H 0.42 -12.61 8.72 -92.71 -0.81 -13.41 16 34 H 0.24 -6.33 8.06 -2.91 -0.02 -6.36 16 35 H 0.16 -2.32 7.64 -2.91 -0.02 -2.34 16 36 H 0.16 -2.31 7.47 -2.91 -0.02 -2.34 16 37 H 0.14 -1.93 7.96 -2.39 -0.02 -1.95 16 38 H 0.39 -6.09 8.70 -74.05 -0.64 -6.74 16 39 H -0.30 0.89 7.11 99.48 0.71 1.60 16 40 H -0.30 1.24 7.11 99.48 0.71 1.95 16 41 H 0.18 -2.79 7.56 -2.91 -0.02 -2.82 16 42 H 0.07 -3.05 8.14 -2.39 -0.02 -3.07 16 43 H 0.05 -1.53 8.14 -2.39 -0.02 -1.55 16 44 H 0.10 -5.34 8.14 -2.39 -0.02 -5.36 16 45 H 0.10 -5.99 8.14 -2.39 -0.02 -6.00 16 Total: 1.00 -95.43 368.54 -3.79 -99.22 By element: Atomic # 1 Polarization: -189.88 SS G_CDS: -2.75 Total: -192.63 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 8.10 Total: 3.10 kcal Atomic # 7 Polarization: 101.63 SS G_CDS: -9.56 Total: 92.07 kcal Atomic # 8 Polarization: 5.45 SS G_CDS: -1.76 Total: 3.68 kcal Atomic # 14 Polarization: -7.62 SS G_CDS: 2.19 Total: -5.44 kcal Total: -95.43 -3.79 -99.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081524_17087578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 258.870 kcal (2) G-P(sol) polarization free energy of solvation -95.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds