Wall clock time and date at job start Mon Mar 8 2021 07:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00901 * 1 3 3 H 1.00896 * 109.47211 * 1 2 4 4 H 1.00903 * 109.46729 * 240.00678 * 1 2 3 5 5 C 1.46896 * 109.47407 * 120.00791 * 1 2 3 6 6 H 1.09001 * 109.47187 * 299.99865 * 5 1 2 7 7 C 1.53002 * 109.47407 * 59.99596 * 5 1 2 8 8 C 1.52997 * 109.47189 * 180.02562 * 7 5 1 9 9 C 1.53000 * 109.47100 * 300.00120 * 8 7 5 10 10 H 1.08997 * 109.47282 * 299.99921 * 9 8 7 11 11 N 1.46506 * 109.47023 * 180.02562 * 9 8 7 12 12 C 1.34780 * 119.99813 * 154.99784 * 11 9 8 13 13 O 1.21532 * 120.00091 * 0.02562 * 12 11 9 14 14 C 1.47987 * 119.99836 * 179.97438 * 12 11 9 15 15 C 1.39505 * 119.98918 * 180.02562 * 14 12 11 16 16 N 1.31934 * 120.00940 * 180.02562 * 15 14 12 17 17 C 1.32953 * 119.97960 * 0.02562 * 16 15 14 18 18 C 1.48187 * 120.01435 * 180.02562 * 17 16 15 19 19 C 1.39850 * 120.54659 * 4.72824 * 18 17 16 20 20 C 1.38421 * 118.30372 * 179.75327 * 19 18 17 21 21 C 1.38298 * 119.29076 * 0.49509 * 20 19 18 22 22 C 1.50699 * 119.47044 * 179.73946 * 21 20 19 23 23 O 1.42906 * 109.47230 * 30.02326 * 22 21 20 24 24 Si 1.86303 * 109.47039 * 150.02205 * 22 21 20 25 25 N 1.31928 * 121.05560 * 359.76783 * 21 20 19 26 26 C 1.31696 * 121.86728 * 359.97080 * 25 21 20 27 27 C 1.39928 * 119.97610 * 359.97438 * 17 16 15 28 28 N 1.31566 * 119.99421 * 0.02562 * 27 17 16 29 29 C 1.52998 * 109.47378 * 60.00206 * 9 8 7 30 30 C 1.53000 * 109.47181 * 179.97438 * 5 1 2 31 31 H 1.09001 * 109.46728 * 59.99987 * 7 5 1 32 32 H 1.09000 * 109.47337 * 300.00745 * 7 5 1 33 33 H 1.09008 * 109.47020 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47487 * 60.00219 * 8 7 5 35 35 H 0.97002 * 119.99912 * 335.00387 * 11 9 8 36 36 H 1.08004 * 119.99295 * 0.27972 * 15 14 12 37 37 H 1.08004 * 120.84388 * 359.97302 * 19 18 17 38 38 H 1.07999 * 120.35526 * 180.23562 * 20 19 18 39 39 H 1.08992 * 109.47558 * 270.02303 * 22 21 20 40 40 H 0.96692 * 114.00258 * 179.97438 * 23 22 21 41 41 H 1.48499 * 109.99994 * 178.68448 * 24 22 21 42 42 H 1.48508 * 109.99852 * 300.00302 * 24 22 21 43 43 H 1.08001 * 119.71137 * 179.97438 * 26 25 21 44 44 H 1.08004 * 120.00573 * 180.02562 * 27 17 16 45 45 H 1.09005 * 109.46950 * 59.99345 * 29 9 8 46 46 H 1.08992 * 109.47321 * 180.02562 * 29 9 8 47 47 H 1.08997 * 109.47282 * 299.99604 * 30 5 1 48 48 H 1.08995 * 109.47275 * 60.00117 * 30 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9512 0.0000 4 1 -0.3363 -0.4756 0.8239 5 6 -0.4897 -0.6926 -1.1993 6 1 -0.1264 -0.1789 -2.0894 7 6 0.0203 -2.1351 -1.1992 8 6 -0.4893 -2.8563 -2.4487 9 6 -2.0193 -2.8563 -2.4492 10 1 -2.3829 -3.3702 -1.5594 11 7 -2.5072 -3.5474 -3.6453 12 6 -3.7292 -4.1160 -3.6437 13 8 -4.4265 -4.0550 -2.6502 14 6 -4.2223 -4.8136 -4.8521 15 6 -5.4873 -5.4016 -4.8504 16 7 -5.9271 -6.0241 -5.9273 17 6 -5.1641 -6.0912 -7.0140 18 6 -5.6575 -6.7897 -8.2242 19 6 -6.9601 -7.2966 -8.2709 20 6 -7.3744 -7.9362 -9.4264 21 6 -6.4921 -8.0616 -10.4839 22 6 -6.9370 -8.7624 -11.7417 23 8 -8.3439 -8.5819 -11.9153 24 14 -6.0337 -8.0453 -13.2048 25 7 -5.2669 -7.5779 -10.4090 26 6 -4.8290 -6.9573 -9.3332 27 6 -3.8953 -5.5012 -7.0149 28 7 -3.4577 -4.8807 -5.9404 29 6 -2.5293 -1.4138 -2.4493 30 6 -2.0197 -0.6932 -1.1989 31 1 -0.3430 -2.6488 -0.3091 32 1 1.1103 -2.1352 -1.1992 33 1 -0.1263 -3.8842 -2.4484 34 1 -0.1256 -2.3425 -3.3385 35 1 -1.9507 -3.5958 -4.4384 36 1 -6.1084 -5.3437 -3.9687 37 1 -7.6269 -7.1885 -7.4281 38 1 -8.3747 -8.3368 -9.4998 39 1 -6.7142 -9.8264 -11.6630 40 1 -8.7002 -9.0070 -12.7073 41 1 -6.4401 -8.7495 -14.4475 42 1 -6.3292 -6.5948 -13.3231 43 1 -3.8190 -6.5753 -9.3095 44 1 -3.2752 -5.5551 -7.8976 45 1 -2.1656 -0.8999 -3.3392 46 1 -3.6192 -1.4138 -2.4492 47 1 -2.3827 -1.2072 -0.3089 48 1 -2.3834 0.3343 -1.1988 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081524_17088084.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:43:18 Heat of formation + Delta-G solvation = 95.148229 kcal Electronic energy + Delta-G solvation = -30263.806616 eV Core-core repulsion = 26016.400939 eV Total energy + Delta-G solvation = -4247.405677 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.171 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.65108 -41.54570 -41.17687 -40.22519 -38.00241 -37.44216 -36.06161 -34.60866 -34.35946 -33.32433 -32.00854 -31.80812 -29.53061 -28.11785 -26.28400 -25.69366 -24.35195 -24.16376 -23.58265 -22.80542 -21.87941 -21.52829 -19.56176 -19.13913 -18.74750 -18.53886 -18.35290 -18.24868 -17.69419 -17.45504 -17.22455 -16.84769 -16.75103 -16.38547 -16.18862 -15.75347 -15.68266 -15.42119 -15.14288 -14.93603 -14.70383 -14.59991 -14.28451 -14.14129 -13.95986 -13.67509 -13.47877 -13.36716 -13.03897 -12.90960 -12.83371 -12.67814 -12.49326 -12.25816 -12.06510 -11.69221 -11.65204 -11.56242 -11.45906 -10.91030 -10.78603 -10.60725 -10.45078 -10.24534 -9.59340 -4.78443 -1.31428 -0.24694 0.03342 0.13190 1.27765 1.47409 1.56152 1.63965 1.83071 1.94092 2.37193 2.50620 2.64237 2.71886 2.83071 3.03285 3.10890 3.25914 3.40582 3.54390 3.60876 3.65002 3.69925 3.70784 3.76400 3.81193 3.90109 3.95840 4.10971 4.11356 4.17512 4.21376 4.31724 4.36315 4.42806 4.49309 4.57873 4.64326 4.67546 4.70951 4.83463 4.87557 4.96815 4.98719 5.03987 5.06465 5.08334 5.17711 5.22686 5.40120 5.43588 5.79219 6.18639 6.40908 6.50467 6.67572 6.90858 Molecular weight = 357.17amu Principal moments of inertia in cm(-1) A = 0.028815 B = 0.001647 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.495416 B =17001.213644 C =17599.237909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.452 0.548 3 H 0.450 0.550 4 H 0.442 0.558 5 C 0.053 3.947 6 H 0.157 0.843 7 C -0.137 4.137 8 C -0.125 4.125 9 C 0.130 3.870 10 H 0.076 0.924 11 N -0.697 5.697 12 C 0.580 3.420 13 O -0.557 6.557 14 C 0.006 3.994 15 C 0.112 3.888 16 N -0.459 5.459 17 C 0.151 3.849 18 C -0.123 4.123 19 C -0.035 4.035 20 C -0.160 4.160 21 C 0.141 3.859 22 C -0.081 4.081 23 O -0.557 6.557 24 Si 0.790 3.210 25 N -0.483 5.483 26 C 0.147 3.853 27 C 0.072 3.928 28 N -0.400 5.400 29 C -0.133 4.133 30 C -0.138 4.138 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.419 0.581 36 H 0.185 0.815 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.113 0.887 40 H 0.404 0.596 41 H -0.283 1.283 42 H -0.315 1.315 43 H 0.209 0.791 44 H 0.221 0.779 45 H 0.083 0.917 46 H 0.043 0.957 47 H 0.090 0.910 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.403 23.455 27.061 44.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.283 0.717 3 H 0.281 0.719 4 H 0.272 0.728 5 C -0.053 4.053 6 H 0.175 0.825 7 C -0.175 4.175 8 C -0.164 4.164 9 C 0.027 3.973 10 H 0.094 0.906 11 N -0.348 5.348 12 C 0.364 3.636 13 O -0.435 6.435 14 C -0.133 4.133 15 C -0.049 4.049 16 N -0.173 5.173 17 C 0.011 3.989 18 C -0.127 4.127 19 C -0.061 4.061 20 C -0.180 4.180 21 C 0.005 3.995 22 C -0.190 4.190 23 O -0.368 6.368 24 Si 0.695 3.305 25 N -0.193 5.193 26 C -0.013 4.013 27 C -0.092 4.092 28 N -0.116 5.116 29 C -0.172 4.172 30 C -0.176 4.176 31 H 0.111 0.889 32 H 0.136 0.864 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.257 0.743 36 H 0.202 0.798 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.131 0.869 40 H 0.255 0.745 41 H -0.211 1.211 42 H -0.243 1.243 43 H 0.226 0.774 44 H 0.237 0.763 45 H 0.101 0.899 46 H 0.062 0.938 47 H 0.108 0.892 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 26.378 24.031 26.715 44.576 hybrid contribution -2.488 -0.683 0.128 2.583 sum 23.890 23.348 26.843 42.854 Atomic orbital electron populations 1.42235 1.22135 1.20907 1.16688 0.71661 0.71859 0.72750 1.22853 0.95962 0.96152 0.90312 0.82509 1.21980 1.03974 0.92528 0.99026 1.21742 0.91071 1.02881 1.00682 1.21437 0.95813 0.92810 0.87283 0.90598 1.45888 1.16087 1.54345 1.18493 1.17561 0.82648 0.78265 0.85125 1.90826 1.57468 1.61060 1.34146 1.22214 0.94361 1.01618 0.95130 1.23902 0.94046 0.90141 0.96807 1.68512 1.34580 1.14539 0.99626 1.20991 0.92352 0.93715 0.91880 1.19451 0.96021 1.03233 0.93964 1.21944 0.95222 0.91361 0.97571 1.21942 1.02002 1.00900 0.93124 1.20838 0.89919 0.93985 0.94711 1.24733 0.86938 1.04421 1.02929 1.86425 1.20227 1.79703 1.50411 0.92981 0.89825 0.75453 0.72198 1.66922 1.14734 1.10744 1.26919 1.23461 1.00650 0.91603 0.85565 1.24361 0.93832 0.92846 0.98181 1.68355 1.32692 1.11975 0.98610 1.21861 1.00759 0.94458 1.00118 1.21952 0.92962 1.03772 0.98897 0.88862 0.86352 0.90997 0.88943 0.74286 0.79774 0.83456 0.83723 0.86950 0.74467 1.21056 1.24346 0.77420 0.76266 0.89856 0.93769 0.89153 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.73 4.15 -168.68 -0.70 47.03 16 2 H 0.45 -36.71 8.96 -89.69 -0.80 -37.51 16 3 H 0.45 -36.18 8.96 -89.70 -0.80 -36.99 16 4 H 0.44 -34.87 8.90 -89.69 -0.80 -35.66 16 5 C 0.05 -3.43 3.02 44.92 0.14 -3.29 16 6 H 0.16 -10.37 8.14 -2.39 -0.02 -10.39 16 7 C -0.14 7.77 5.43 30.59 0.17 7.94 16 8 C -0.13 5.60 5.39 30.59 0.16 5.76 16 9 C 0.13 -4.68 2.45 44.99 0.11 -4.57 16 10 H 0.08 -2.40 7.58 -2.39 -0.02 -2.42 16 11 N -0.70 19.34 5.07 -445.26 -2.26 17.08 16 12 C 0.58 -10.70 7.77 86.83 0.67 -10.03 16 13 O -0.56 6.90 15.99 -3.82 -0.06 6.84 16 14 C 0.01 -0.10 6.75 41.83 0.28 0.18 16 15 C 0.11 -1.47 10.76 84.98 0.91 -0.56 16 16 N -0.46 5.11 9.68 -183.25 -1.77 3.34 16 17 C 0.15 -2.23 6.74 42.03 0.28 -1.95 16 18 C -0.12 1.69 5.89 -19.95 -0.12 1.57 16 19 C -0.03 0.36 9.70 22.70 0.22 0.58 16 20 C -0.16 1.41 9.37 22.33 0.21 1.62 16 21 C 0.14 -1.27 6.11 42.56 0.26 -1.01 16 22 C -0.08 0.91 2.98 71.24 0.21 1.12 16 23 O -0.56 5.45 11.82 -148.98 -1.76 3.69 16 24 Si 0.79 -8.16 31.87 68.60 2.19 -5.97 16 25 N -0.48 5.53 8.34 -182.91 -1.53 4.01 16 26 C 0.15 -2.41 10.60 85.00 0.90 -1.51 16 27 C 0.07 -1.46 10.61 85.14 0.90 -0.55 16 28 N -0.40 7.73 9.69 -183.52 -1.78 5.95 16 29 C -0.13 5.27 5.50 30.61 0.17 5.43 16 30 C -0.14 7.37 5.43 30.61 0.17 7.53 16 31 H 0.09 -5.23 8.14 -2.39 -0.02 -5.25 16 32 H 0.12 -7.11 8.14 -2.39 -0.02 -7.13 16 33 H 0.07 -2.84 8.14 -2.38 -0.02 -2.86 16 34 H 0.09 -4.25 8.14 -2.39 -0.02 -4.27 16 35 H 0.42 -12.60 7.94 -92.71 -0.74 -13.33 16 36 H 0.19 -2.64 7.64 -2.91 -0.02 -2.66 16 37 H 0.15 -1.60 7.65 -2.91 -0.02 -1.62 16 38 H 0.14 -1.29 7.47 -2.91 -0.02 -1.32 16 39 H 0.11 -1.75 7.96 -2.39 -0.02 -1.77 16 40 H 0.40 -7.03 8.74 -74.06 -0.65 -7.67 16 41 H -0.28 1.97 7.11 99.48 0.71 2.68 16 42 H -0.32 0.41 7.11 99.48 0.71 1.11 16 43 H 0.21 -5.45 6.25 -2.91 -0.02 -5.46 16 44 H 0.22 -6.35 6.26 -2.91 -0.02 -6.37 16 45 H 0.08 -3.38 8.14 -2.38 -0.02 -3.40 16 46 H 0.04 -1.30 8.14 -2.39 -0.02 -1.32 16 47 H 0.09 -4.75 8.14 -2.39 -0.02 -4.77 16 48 H 0.11 -5.94 8.14 -2.39 -0.02 -5.96 16 Total: 1.00 -99.40 392.93 -4.71 -104.10 By element: Atomic # 1 Polarization: -191.65 SS G_CDS: -2.69 Total: -194.34 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 5.65 Total: 8.27 kcal Atomic # 7 Polarization: 85.45 SS G_CDS: -8.04 Total: 77.41 kcal Atomic # 8 Polarization: 12.36 SS G_CDS: -1.82 Total: 10.53 kcal Atomic # 14 Polarization: -8.16 SS G_CDS: 2.19 Total: -5.97 kcal Total: -99.40 -4.71 -104.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081524_17088084.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.252 kcal (2) G-P(sol) polarization free energy of solvation -99.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds