Wall clock time and date at job start Mon Mar 8 2021 07:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00898 * 1 3 3 H 1.00903 * 109.47051 * 1 2 4 4 H 1.00901 * 109.46776 * 240.00920 * 1 2 3 5 5 C 1.46898 * 109.47575 * 120.00687 * 1 2 3 6 6 H 1.09001 * 109.47062 * 179.97438 * 5 1 2 7 7 C 1.53006 * 109.47006 * 299.99671 * 5 1 2 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 5 1 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 5 10 10 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 12 12 C 1.34782 * 120.00074 * 155.00031 * 11 9 8 13 13 O 1.21566 * 119.99841 * 359.97438 * 12 11 9 14 14 C 1.47690 * 120.00004 * 179.97438 * 12 11 9 15 15 C 1.40094 * 120.86076 * 359.72309 * 14 12 11 16 16 N 1.31951 * 119.02030 * 179.69483 * 15 14 12 17 17 C 1.32723 * 120.88910 * 0.61236 * 16 15 14 18 18 C 1.48173 * 119.05321 * 179.67995 * 17 16 15 19 19 C 1.39852 * 120.54427 * 359.97438 * 18 17 16 20 20 C 1.38430 * 118.29585 * 179.97438 * 19 18 17 21 21 C 1.38284 * 119.29782 * 0.02562 * 20 19 18 22 22 C 1.50701 * 119.47527 * 179.97438 * 21 20 19 23 23 O 1.42905 * 109.46853 * 30.00160 * 22 21 20 24 24 Si 1.86299 * 109.47313 * 149.99929 * 22 21 20 25 25 N 1.31934 * 121.05450 * 0.02562 * 21 20 19 26 26 C 1.31700 * 121.86523 * 359.68362 * 25 21 20 27 27 N 1.32730 * 121.89778 * 359.65568 * 17 16 15 28 28 C 1.31949 * 120.88626 * 0.02562 * 27 17 16 29 29 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 30 30 C 1.52997 * 109.47123 * 59.99652 * 5 1 2 31 31 H 1.08998 * 109.46505 * 59.99663 * 7 5 1 32 32 H 1.08996 * 109.46884 * 300.00544 * 7 5 1 33 33 H 1.09002 * 109.47153 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46832 * 60.00321 * 8 7 5 35 35 H 0.97002 * 120.00427 * 334.99530 * 11 9 8 36 36 H 1.08006 * 120.49076 * 359.97438 * 15 14 12 37 37 H 1.07992 * 120.85329 * 359.95429 * 19 18 17 38 38 H 1.08006 * 120.35046 * 180.02562 * 20 19 18 39 39 H 1.08997 * 109.47340 * 270.00550 * 22 21 20 40 40 H 0.96699 * 114.00227 * 59.99993 * 23 22 21 41 41 H 1.48494 * 109.99879 * 58.68251 * 24 22 21 42 42 H 1.48501 * 110.00073 * 180.02562 * 24 22 21 43 43 H 1.07998 * 119.70865 * 180.28906 * 26 25 21 44 44 H 1.08005 * 120.48204 * 179.97438 * 28 27 17 45 45 H 1.08992 * 109.47554 * 59.99639 * 29 9 8 46 46 H 1.09004 * 109.47108 * 179.97438 * 29 9 8 47 47 H 1.09002 * 109.47045 * 60.00157 * 30 5 1 48 48 H 1.09001 * 109.47375 * 300.00082 * 30 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3363 -0.4755 0.8239 5 6 -0.4898 -0.6926 -1.1993 6 1 -1.5798 -0.6930 -1.1990 7 6 0.0201 0.0286 -2.4487 8 6 -0.4894 -0.6931 -3.6978 9 6 0.0210 -2.1355 -3.6973 10 1 1.1110 -2.1352 -3.6972 11 7 -0.4664 -2.8263 -4.8937 12 6 0.2110 -3.8830 -5.3848 13 8 1.2267 -4.2625 -4.8351 14 6 -0.2807 -4.5798 -6.5906 15 6 -1.4522 -4.1613 -7.2349 16 7 -1.8552 -4.8064 -8.3131 17 6 -1.1736 -5.8451 -8.7802 18 6 -1.6669 -6.5442 -9.9899 19 6 -2.8340 -6.1172 -10.6313 20 6 -3.2523 -6.8039 -11.7582 21 6 -2.5101 -7.8800 -12.2092 22 6 -2.9620 -8.6308 -13.4352 23 8 -3.6578 -7.7400 -14.3096 24 14 -1.4779 -9.3324 -14.3160 25 7 -1.4132 -8.2606 -11.5826 26 6 -0.9725 -7.6357 -10.5104 27 7 -0.0626 -6.2754 -8.1952 28 6 0.4091 -5.6799 -7.1163 29 6 -0.4889 -2.8566 -2.4481 30 6 0.0202 -2.1351 -1.1992 31 1 1.1101 0.0286 -2.4487 32 1 -0.3431 1.0562 -2.4487 33 1 -0.1258 -0.1796 -4.5879 34 1 -1.5794 -0.6935 -3.6979 35 1 -1.2767 -2.5233 -5.3325 36 1 -2.0148 -3.3202 -6.8572 37 1 -3.3949 -5.2738 -10.2568 38 1 -4.1487 -6.5023 -12.2796 39 1 -3.6266 -9.4426 -13.1398 40 1 -3.1259 -6.9916 -14.6132 41 1 -0.7279 -10.2358 -13.4069 42 1 -1.9102 -10.0747 -15.5274 43 1 -0.0677 -7.9741 -10.0276 44 1 1.3135 -6.0358 -6.6452 45 1 -1.5789 -2.8569 -2.4481 46 1 -0.1256 -3.8843 -2.4480 47 1 -0.3430 -2.6488 -0.3091 48 1 1.1102 -2.1351 -1.1993 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081524_17119452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:54:19 Heat of formation + Delta-G solvation = 96.870471 kcal Electronic energy + Delta-G solvation = -30295.148120 eV Core-core repulsion = 26047.817125 eV Total energy + Delta-G solvation = -4247.330995 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.171 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.60599 -41.55937 -41.18624 -40.23410 -37.91377 -37.43001 -35.38065 -35.05275 -34.28752 -33.18624 -32.10243 -31.99564 -29.46981 -28.07967 -26.20270 -25.68158 -24.32463 -24.17502 -23.63030 -22.89508 -21.87617 -21.49822 -19.44207 -19.13860 -18.93290 -18.58349 -18.37812 -18.22478 -17.51646 -17.33332 -16.98335 -16.74673 -16.67230 -16.35453 -15.93856 -15.86476 -15.82842 -15.20446 -15.13485 -15.01220 -14.70420 -14.60110 -14.28604 -14.20660 -14.15458 -13.66229 -13.42685 -13.35659 -12.96019 -12.88001 -12.56830 -12.47720 -12.26574 -12.23901 -12.13631 -11.69216 -11.65746 -11.48098 -11.23267 -11.02855 -10.81743 -10.62229 -10.41204 -10.24395 -9.76340 -4.99067 -1.28584 -0.17774 0.00117 0.13830 1.28775 1.57207 1.58552 1.73173 1.88861 2.03725 2.31122 2.39319 2.76030 2.77553 2.96543 3.11565 3.18027 3.26625 3.33999 3.44457 3.59798 3.70286 3.70532 3.74932 3.76919 3.84577 3.91699 3.96085 4.02448 4.12746 4.13853 4.24044 4.37858 4.44585 4.48118 4.49483 4.58171 4.64042 4.69344 4.72817 4.81408 4.88814 5.00074 5.01906 5.03041 5.07738 5.10338 5.19088 5.24526 5.41814 5.44070 5.61114 6.25934 6.57968 6.66105 6.77989 6.95171 Molecular weight = 357.17amu Principal moments of inertia in cm(-1) A = 0.034125 B = 0.001624 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.305294 B =17239.357209 C =17749.328574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 H 0.442 0.558 3 H 0.451 0.549 4 H 0.450 0.550 5 C 0.053 3.947 6 H 0.158 0.842 7 C -0.139 4.139 8 C -0.126 4.126 9 C 0.133 3.867 10 H 0.073 0.927 11 N -0.708 5.708 12 C 0.578 3.422 13 O -0.564 6.564 14 C -0.255 4.255 15 C 0.202 3.798 16 N -0.522 5.522 17 C 0.381 3.619 18 C -0.122 4.122 19 C -0.013 4.013 20 C -0.155 4.155 21 C 0.110 3.890 22 C -0.059 4.059 23 O -0.543 6.543 24 Si 0.786 3.214 25 N -0.508 5.508 26 C 0.154 3.846 27 N -0.533 5.533 28 C 0.205 3.795 29 C -0.133 4.133 30 C -0.139 4.139 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.415 0.585 36 H 0.220 0.780 37 H 0.169 0.831 38 H 0.168 0.832 39 H 0.125 0.875 40 H 0.399 0.601 41 H -0.295 1.295 42 H -0.299 1.299 43 H 0.172 0.828 44 H 0.187 0.813 45 H 0.086 0.914 46 H 0.042 0.958 47 H 0.105 0.895 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 32.181 37.720 49.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.021 5.021 2 H 0.272 0.728 3 H 0.283 0.717 4 H 0.281 0.719 5 C -0.053 4.053 6 H 0.176 0.824 7 C -0.177 4.177 8 C -0.164 4.164 9 C 0.030 3.970 10 H 0.091 0.909 11 N -0.360 5.360 12 C 0.364 3.636 13 O -0.444 6.444 14 C -0.262 4.262 15 C 0.034 3.966 16 N -0.235 5.235 17 C 0.118 3.882 18 C -0.126 4.126 19 C -0.040 4.040 20 C -0.174 4.174 21 C -0.027 4.027 22 C -0.170 4.170 23 O -0.350 6.350 24 Si 0.692 3.308 25 N -0.219 5.219 26 C -0.006 4.006 27 N -0.247 5.247 28 C 0.038 3.962 29 C -0.172 4.172 30 C -0.177 4.177 31 H 0.109 0.891 32 H 0.136 0.864 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.254 0.746 36 H 0.236 0.764 37 H 0.186 0.814 38 H 0.186 0.814 39 H 0.143 0.857 40 H 0.250 0.750 41 H -0.222 1.222 42 H -0.227 1.227 43 H 0.189 0.811 44 H 0.203 0.797 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.123 0.877 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.650 29.520 36.587 47.040 hybrid contribution -0.397 0.358 1.123 1.244 sum 1.253 29.878 37.710 48.128 Atomic orbital electron populations 1.42255 1.21969 1.21115 1.16750 0.72803 0.71677 0.71898 1.22871 1.04873 0.92596 0.84925 0.82398 1.21987 1.03416 1.00947 0.91331 1.21757 1.03180 0.91638 0.99840 1.21354 0.99666 0.92628 0.83377 0.90910 1.45845 1.29200 1.30649 1.30290 1.17644 0.83036 0.80510 0.82453 1.90831 1.25993 1.66402 1.61135 1.21826 1.01084 1.02046 1.01285 1.24093 0.90100 0.95526 0.86846 1.68399 1.32885 1.08165 1.14047 1.21307 0.86464 0.88198 0.92214 1.19183 0.98837 0.99141 0.95434 1.22008 0.92452 0.97613 0.91910 1.22054 1.02115 0.96036 0.97222 1.22113 0.90454 0.94066 0.96071 1.24917 1.06406 0.95788 0.89886 1.86499 1.42930 1.41384 1.64219 0.93294 0.77233 0.84164 0.76083 1.67318 1.14578 1.30454 1.09549 1.23066 0.98121 0.89532 0.89857 1.68470 1.13538 1.31791 1.10878 1.23700 0.97042 0.87901 0.87553 1.21845 1.02421 0.99206 0.93771 1.21938 1.03157 0.93511 0.99143 0.89100 0.86427 0.90727 0.88508 0.74640 0.76363 0.81361 0.81424 0.85743 0.75038 1.22215 1.22671 0.81115 0.79658 0.89519 0.93893 0.87683 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.51 4.15 -168.68 -0.70 47.81 16 2 H 0.44 -35.22 8.90 -89.70 -0.80 -36.01 16 3 H 0.45 -37.17 8.96 -89.69 -0.80 -37.97 16 4 H 0.45 -36.58 8.96 -89.69 -0.80 -37.38 16 5 C 0.05 -3.52 3.03 44.92 0.14 -3.39 16 6 H 0.16 -10.77 8.14 -2.39 -0.02 -10.79 16 7 C -0.14 8.16 5.43 30.60 0.17 8.32 16 8 C -0.13 6.07 5.39 30.59 0.16 6.23 16 9 C 0.13 -5.29 2.45 44.99 0.11 -5.18 16 10 H 0.07 -2.49 7.58 -2.39 -0.02 -2.50 16 11 N -0.71 23.83 5.03 -445.56 -2.24 21.59 16 12 C 0.58 -13.30 7.75 86.74 0.67 -12.63 16 13 O -0.56 8.37 16.10 -3.92 -0.06 8.31 16 14 C -0.25 5.27 5.91 -19.88 -0.12 5.15 16 15 C 0.20 -4.80 10.80 85.13 0.92 -3.88 16 16 N -0.52 8.60 9.50 -188.15 -1.79 6.82 16 17 C 0.38 -4.47 7.56 137.41 1.04 -3.43 16 18 C -0.12 1.30 5.89 -19.96 -0.12 1.18 16 19 C -0.01 0.18 9.68 22.71 0.22 0.40 16 20 C -0.15 2.09 9.37 22.33 0.21 2.30 16 21 C 0.11 -1.06 6.07 42.55 0.26 -0.80 16 22 C -0.06 0.60 2.98 71.24 0.21 0.81 16 23 O -0.54 6.78 11.84 -148.98 -1.76 5.02 16 24 Si 0.79 -6.35 31.88 68.60 2.19 -4.16 16 25 N -0.51 3.08 8.35 -182.93 -1.53 1.55 16 26 C 0.15 -1.24 10.73 85.00 0.91 -0.32 16 27 N -0.53 5.82 9.45 -188.16 -1.78 4.04 16 28 C 0.20 -3.06 10.87 85.12 0.93 -2.13 16 29 C -0.13 5.66 5.49 30.58 0.17 5.83 16 30 C -0.14 7.68 5.43 30.58 0.17 7.85 16 31 H 0.09 -5.23 8.14 -2.39 -0.02 -5.25 16 32 H 0.12 -7.28 8.14 -2.39 -0.02 -7.30 16 33 H 0.07 -3.25 8.14 -2.39 -0.02 -3.26 16 34 H 0.10 -4.88 8.14 -2.39 -0.02 -4.90 16 35 H 0.42 -16.34 6.73 -92.71 -0.62 -16.97 16 36 H 0.22 -7.64 6.52 -2.91 -0.02 -7.66 16 37 H 0.17 -3.01 7.60 -2.91 -0.02 -3.04 16 38 H 0.17 -2.85 7.47 -2.91 -0.02 -2.88 16 39 H 0.13 -1.19 7.96 -2.39 -0.02 -1.21 16 40 H 0.40 -8.27 8.70 -74.06 -0.64 -8.92 16 41 H -0.30 0.00 7.11 99.48 0.71 0.70 16 42 H -0.30 0.49 7.11 99.48 0.71 1.19 16 43 H 0.17 -1.51 7.51 -2.91 -0.02 -1.54 16 44 H 0.19 -3.01 7.74 -2.91 -0.02 -3.03 16 45 H 0.09 -3.82 8.14 -2.39 -0.02 -3.84 16 46 H 0.04 -1.36 8.14 -2.38 -0.02 -1.38 16 47 H 0.10 -5.96 8.14 -2.39 -0.02 -5.98 16 48 H 0.09 -4.70 8.14 -2.39 -0.02 -4.72 16 Total: 1.00 -103.14 393.25 -4.21 -107.35 By element: Atomic # 1 Polarization: -202.06 SS G_CDS: -2.58 Total: -204.64 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 6.04 Total: 6.32 kcal Atomic # 7 Polarization: 89.84 SS G_CDS: -8.04 Total: 81.81 kcal Atomic # 8 Polarization: 15.16 SS G_CDS: -1.83 Total: 13.33 kcal Atomic # 14 Polarization: -6.35 SS G_CDS: 2.19 Total: -4.16 kcal Total: -103.14 -4.21 -107.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081524_17119452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.221 kcal (2) G-P(sol) polarization free energy of solvation -103.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds