Wall clock time and date at job start Mon Mar 8 2021 07:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00897 * 1 3 3 H 1.00898 * 109.47614 * 1 2 4 4 H 1.00901 * 109.47494 * 239.99894 * 1 2 3 5 5 C 1.46899 * 109.46870 * 120.00192 * 1 2 3 6 6 H 1.09002 * 109.47496 * 299.99692 * 5 1 2 7 7 C 1.53002 * 109.47394 * 60.00030 * 5 1 2 8 8 C 1.53000 * 109.47233 * 180.02562 * 7 5 1 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 5 10 10 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 11 11 N 1.46500 * 109.47473 * 180.02562 * 9 8 7 12 12 C 1.34777 * 120.00270 * 154.99797 * 11 9 8 13 13 O 1.21577 * 119.99924 * 0.02562 * 12 11 9 14 14 C 1.47704 * 120.00014 * 180.02562 * 12 11 9 15 15 C 1.39626 * 120.46151 * 0.02562 * 14 12 11 16 16 N 1.31510 * 120.69230 * 179.97438 * 15 14 12 17 17 C 1.32768 * 121.77554 * 0.02562 * 16 15 14 18 18 C 1.48223 * 119.57842 * 179.97438 * 17 16 15 19 19 C 1.39821 * 120.54124 * 4.72252 * 18 17 16 20 20 C 1.38439 * 118.30194 * 179.73853 * 19 18 17 21 21 C 1.38288 * 119.29067 * 0.55935 * 20 19 18 22 22 C 1.50694 * 119.47561 * 179.68014 * 21 20 19 23 23 O 1.42903 * 109.47285 * 30.02104 * 22 21 20 24 24 Si 1.86301 * 109.47016 * 150.02263 * 22 21 20 25 25 N 1.31937 * 121.04722 * 359.70102 * 21 20 19 26 26 C 1.31693 * 121.86284 * 0.02562 * 25 21 20 27 27 C 1.39511 * 120.85154 * 0.02562 * 17 16 15 28 28 C 1.38042 * 119.21814 * 359.69786 * 27 17 16 29 29 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 30 30 C 1.52997 * 109.47254 * 179.97438 * 5 1 2 31 31 H 1.08992 * 109.47063 * 59.99965 * 7 5 1 32 32 H 1.09004 * 109.46733 * 299.99678 * 7 5 1 33 33 H 1.09002 * 109.47398 * 59.99826 * 8 7 5 34 34 H 1.09001 * 109.47194 * 180.02562 * 8 7 5 35 35 H 0.97000 * 119.99491 * 335.00093 * 11 9 8 36 36 H 1.08001 * 119.65296 * 0.02562 * 15 14 12 37 37 H 1.08001 * 120.85212 * 359.97395 * 19 18 17 38 38 H 1.07994 * 120.35696 * 180.23408 * 20 19 18 39 39 H 1.08999 * 109.47152 * 270.01703 * 22 21 20 40 40 H 0.96697 * 113.99537 * 60.00010 * 23 22 21 41 41 H 1.48506 * 109.99861 * 179.97438 * 24 22 21 42 42 H 1.48498 * 110.00053 * 301.31497 * 24 22 21 43 43 H 1.08004 * 119.70952 * 179.97438 * 26 25 21 44 44 H 1.08008 * 120.39302 * 179.97438 * 27 17 16 45 45 H 1.07997 * 120.81078 * 180.29569 * 28 27 17 46 46 H 1.09000 * 109.47486 * 180.02562 * 29 9 8 47 47 H 1.09002 * 109.46716 * 60.00091 * 29 9 8 48 48 H 1.09002 * 109.47153 * 300.00004 * 30 5 1 49 49 H 1.09001 * 109.47289 * 60.00087 * 30 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3364 -0.4757 0.8238 5 6 -0.4896 -0.6925 -1.1994 6 1 -0.1263 -0.1787 -2.0895 7 6 0.0204 -2.1351 -1.1994 8 6 -0.4890 -2.8561 -2.4490 9 6 -2.0190 -2.8562 -2.4496 10 1 -2.3827 -3.3702 -1.5598 11 7 -2.5069 -3.5472 -3.6458 12 6 -3.7288 -4.1158 -3.6443 13 8 -4.4264 -4.0549 -2.6504 14 6 -4.2204 -4.8129 -4.8501 15 6 -3.4271 -4.8891 -5.9966 16 7 -3.8601 -5.5091 -7.0725 17 6 -5.0568 -6.0825 -7.1151 18 6 -5.4960 -6.7680 -8.3537 19 6 -4.6251 -6.9004 -9.4395 20 6 -5.0818 -7.5538 -10.5713 21 6 -6.3763 -8.0397 -10.5961 22 6 -6.8800 -8.7452 -11.8287 23 8 -5.7893 -9.3943 -12.4853 24 14 -8.1548 -10.0132 -11.3411 25 7 -7.1773 -7.8950 -9.5578 26 6 -6.7864 -7.2857 -8.4576 27 6 -5.9068 -6.0472 -6.0093 28 6 -5.4883 -5.4114 -4.8578 29 6 -2.5291 -1.4138 -2.4496 30 6 -2.0196 -0.6931 -1.1992 31 1 -0.3429 -2.6488 -0.3095 32 1 1.1104 -2.1350 -1.1994 33 1 -0.1253 -2.3422 -3.3388 34 1 -0.1261 -3.8839 -2.4487 35 1 -1.9504 -3.5954 -4.4388 36 1 -2.4473 -4.4348 -5.9995 37 1 -3.6205 -6.5064 -9.3950 38 1 -4.4358 -7.6781 -11.4278 39 1 -7.3306 -8.0185 -12.5047 40 1 -5.3403 -10.0558 -11.9413 41 1 -8.6600 -10.7157 -12.5480 42 1 -7.5617 -10.9916 -10.3944 43 1 -7.4713 -7.1864 -7.6285 44 1 -6.8789 -6.5158 -6.0522 45 1 -6.1234 -5.3728 -3.9851 46 1 -3.6191 -1.4138 -2.4496 47 1 -2.1654 -0.8998 -3.3394 48 1 -2.3826 -1.2072 -0.3092 49 1 -2.3834 0.3344 -1.1990 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081524_17119696.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:58:46 Heat of formation + Delta-G solvation = 80.872668 kcal Electronic energy + Delta-G solvation = -30152.709612 eV Core-core repulsion = 25970.110811 eV Total energy + Delta-G solvation = -4182.598801 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.176 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.10206 -41.52616 -40.93767 -39.99970 -38.03871 -37.41284 -35.01264 -34.37048 -33.73592 -33.11059 -32.00356 -31.52868 -29.37651 -27.72813 -25.84296 -25.01080 -24.19212 -23.95295 -23.47445 -22.61960 -21.74834 -21.46126 -19.42445 -18.89393 -18.53778 -18.40837 -18.28420 -18.00127 -17.43936 -17.28474 -16.94515 -16.64700 -16.49742 -16.30252 -15.98027 -15.56339 -15.41412 -15.28741 -15.09247 -14.88156 -14.55178 -14.39310 -14.20809 -14.18547 -14.07797 -13.74475 -13.65466 -13.36375 -13.13831 -12.89930 -12.69784 -12.48643 -12.25629 -12.10921 -11.68839 -11.54480 -11.52269 -11.38100 -11.11282 -11.00344 -10.72547 -10.66108 -10.52261 -10.22637 -9.48917 -4.79600 -1.05544 0.06160 0.10676 0.20007 1.29510 1.57096 1.63818 1.66992 1.89551 1.97114 2.48240 2.72239 2.85757 3.00371 3.10611 3.22505 3.25457 3.37998 3.49815 3.62307 3.64004 3.69083 3.72181 3.80878 3.87051 3.91666 3.95354 4.02239 4.10397 4.11436 4.21767 4.22801 4.36334 4.44168 4.48502 4.52504 4.57492 4.63578 4.69940 4.71537 4.81392 4.82689 4.90748 4.98407 4.98830 5.06483 5.07147 5.08630 5.20124 5.23606 5.33536 5.43589 5.50278 6.30901 6.32906 6.62457 6.74775 7.00508 Molecular weight = 356.18amu Principal moments of inertia in cm(-1) A = 0.033114 B = 0.001619 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.360633 B =17293.036476 C =17827.010054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.442 0.558 5 C 0.053 3.947 6 H 0.158 0.842 7 C -0.138 4.138 8 C -0.126 4.126 9 C 0.133 3.867 10 H 0.071 0.929 11 N -0.712 5.712 12 C 0.569 3.431 13 O -0.570 6.570 14 C -0.204 4.204 15 C 0.149 3.851 16 N -0.500 5.500 17 C 0.189 3.811 18 C -0.120 4.120 19 C -0.033 4.033 20 C -0.163 4.163 21 C 0.098 3.902 22 C -0.072 4.072 23 O -0.540 6.540 24 Si 0.784 3.216 25 N -0.484 5.484 26 C 0.132 3.868 27 C -0.166 4.166 28 C -0.019 4.019 29 C -0.132 4.132 30 C -0.138 4.138 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.414 0.586 36 H 0.195 0.805 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.141 0.859 40 H 0.388 0.612 41 H -0.299 1.299 42 H -0.301 1.301 43 H 0.192 0.808 44 H 0.169 0.831 45 H 0.153 0.847 46 H 0.042 0.958 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.839 28.036 29.904 47.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.283 0.717 3 H 0.281 0.719 4 H 0.272 0.728 5 C -0.052 4.052 6 H 0.176 0.824 7 C -0.176 4.176 8 C -0.164 4.164 9 C 0.029 3.971 10 H 0.089 0.911 11 N -0.363 5.363 12 C 0.356 3.644 13 O -0.450 6.450 14 C -0.210 4.210 15 C -0.011 4.011 16 N -0.208 5.208 17 C 0.054 3.946 18 C -0.123 4.123 19 C -0.059 4.059 20 C -0.182 4.182 21 C -0.038 4.038 22 C -0.182 4.182 23 O -0.347 6.347 24 Si 0.690 3.310 25 N -0.195 5.195 26 C -0.027 4.027 27 C -0.186 4.186 28 C -0.045 4.045 29 C -0.172 4.172 30 C -0.177 4.177 31 H 0.109 0.891 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.252 0.748 36 H 0.211 0.789 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.158 0.842 40 H 0.238 0.762 41 H -0.227 1.227 42 H -0.228 1.228 43 H 0.209 0.791 44 H 0.187 0.813 45 H 0.171 0.829 46 H 0.061 0.939 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 22.605 27.149 29.108 45.775 hybrid contribution 1.234 -0.451 0.289 1.345 sum 23.839 26.699 29.398 46.318 Atomic orbital electron populations 1.42245 1.22129 1.20922 1.16729 0.71675 0.71864 0.72788 1.22860 0.95939 0.96150 0.90295 0.82424 1.21983 1.03935 0.92555 0.99158 1.21755 0.91144 1.02895 1.00652 1.21337 0.95633 0.92678 0.87442 0.91085 1.45904 1.16433 1.55712 1.18298 1.18024 0.82127 0.77904 0.86355 1.90805 1.57483 1.61271 1.35491 1.21111 0.97848 1.05387 0.96614 1.23325 0.99527 0.92206 0.86047 1.67590 1.14827 1.09775 1.28627 1.19809 0.89895 0.92582 0.92329 1.19639 0.96176 1.02436 0.94009 1.21951 1.00483 0.92661 0.90767 1.22006 0.96862 0.99247 1.00087 1.21920 0.91669 0.95557 0.94648 1.25021 0.96037 1.03286 0.93841 1.86596 1.46995 1.57356 1.43789 0.92854 0.84774 0.76739 0.76650 1.66955 1.36156 1.16052 1.00351 1.23349 0.93312 0.90715 0.95363 1.22328 1.02486 1.01335 0.92412 1.21858 0.94247 0.90179 0.98196 1.21858 1.00675 0.94603 1.00039 1.21954 0.92976 1.03750 0.98999 0.89072 0.86425 0.88663 0.90910 0.74793 0.78883 0.82681 0.82907 0.84172 0.76227 1.22715 1.22827 0.79128 0.81337 0.82948 0.93930 0.89620 0.89405 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.04 4.15 -168.68 -0.70 47.33 16 2 H 0.45 -36.87 8.96 -89.70 -0.80 -37.68 16 3 H 0.45 -36.35 8.96 -89.70 -0.80 -37.16 16 4 H 0.44 -34.96 8.90 -89.69 -0.80 -35.76 16 5 C 0.05 -3.49 3.02 44.92 0.14 -3.35 16 6 H 0.16 -10.58 8.14 -2.39 -0.02 -10.60 16 7 C -0.14 7.95 5.43 30.60 0.17 8.12 16 8 C -0.13 5.85 5.39 30.59 0.16 6.01 16 9 C 0.13 -5.01 2.45 44.99 0.11 -4.90 16 10 H 0.07 -2.29 7.58 -2.39 -0.02 -2.31 16 11 N -0.71 22.14 5.03 -445.54 -2.24 19.90 16 12 C 0.57 -11.87 7.74 86.74 0.67 -11.20 16 13 O -0.57 7.37 16.07 -3.96 -0.06 7.31 16 14 C -0.20 4.00 5.89 -19.96 -0.12 3.89 16 15 C 0.15 -3.20 10.70 85.08 0.91 -2.29 16 16 N -0.50 7.83 9.49 -183.84 -1.74 6.08 16 17 C 0.19 -2.80 6.73 41.97 0.28 -2.52 16 18 C -0.12 1.59 5.89 -19.95 -0.12 1.47 16 19 C -0.03 0.41 9.69 22.70 0.22 0.63 16 20 C -0.16 1.90 9.37 22.33 0.21 2.11 16 21 C 0.10 -0.98 6.08 42.55 0.26 -0.73 16 22 C -0.07 0.73 2.98 71.23 0.21 0.94 16 23 O -0.54 4.85 11.84 -148.98 -1.76 3.08 16 24 Si 0.78 -6.60 31.87 68.60 2.19 -4.41 16 25 N -0.48 4.92 8.34 -182.94 -1.53 3.39 16 26 C 0.13 -1.82 10.59 85.00 0.90 -0.92 16 27 C -0.17 2.97 9.45 22.53 0.21 3.19 16 28 C -0.02 0.33 9.70 22.70 0.22 0.55 16 29 C -0.13 5.43 5.50 30.61 0.17 5.59 16 30 C -0.14 7.50 5.43 30.61 0.17 7.67 16 31 H 0.09 -5.14 8.14 -2.39 -0.02 -5.16 16 32 H 0.12 -7.15 8.14 -2.39 -0.02 -7.17 16 33 H 0.09 -4.61 8.14 -2.39 -0.02 -4.63 16 34 H 0.07 -3.02 8.14 -2.39 -0.02 -3.03 16 35 H 0.41 -14.94 6.65 -92.71 -0.62 -15.55 16 36 H 0.19 -5.89 6.41 -2.91 -0.02 -5.91 16 37 H 0.16 -2.29 7.63 -2.91 -0.02 -2.31 16 38 H 0.15 -2.06 7.47 -2.91 -0.02 -2.08 16 39 H 0.14 -1.71 7.96 -2.39 -0.02 -1.73 16 40 H 0.39 -5.61 8.70 -74.06 -0.64 -6.25 16 41 H -0.30 0.50 7.11 99.48 0.71 1.21 16 42 H -0.30 0.82 7.11 99.48 0.71 1.52 16 43 H 0.19 -3.89 6.22 -2.91 -0.02 -3.91 16 44 H 0.17 -3.84 6.23 -2.91 -0.02 -3.86 16 45 H 0.15 -2.73 7.73 -2.91 -0.02 -2.75 16 46 H 0.04 -1.28 8.14 -2.39 -0.02 -1.30 16 47 H 0.09 -3.63 8.14 -2.39 -0.02 -3.65 16 48 H 0.09 -4.64 8.14 -2.39 -0.02 -4.66 16 49 H 0.11 -5.95 8.14 -2.39 -0.02 -5.97 16 Total: 1.00 -100.06 395.73 -3.67 -103.73 By element: Atomic # 1 Polarization: -198.11 SS G_CDS: -2.59 Total: -200.70 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 4.77 Total: 14.28 kcal Atomic # 7 Polarization: 82.93 SS G_CDS: -6.21 Total: 76.71 kcal Atomic # 8 Polarization: 12.22 SS G_CDS: -1.83 Total: 10.39 kcal Atomic # 14 Polarization: -6.60 SS G_CDS: 2.19 Total: -4.41 kcal Total: -100.06 -3.67 -103.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081524_17119696.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.599 kcal (2) G-P(sol) polarization free energy of solvation -100.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds