Wall clock time and date at job start Mon Mar 8 2021 09:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.47168 * 2 1 4 4 C 1.50704 * 109.47308 * 239.99729 * 2 1 3 5 5 C 1.38275 * 119.93583 * 299.99953 * 4 2 1 6 6 C 1.38115 * 120.06787 * 180.02562 * 5 4 2 7 7 C 1.38825 * 119.93559 * 359.97438 * 6 5 4 8 8 N 1.40241 * 120.07072 * 180.02562 * 7 6 5 9 9 C 1.36112 * 125.94593 * 179.97438 * 8 7 6 10 10 C 1.35371 * 106.05236 * 180.02562 * 9 8 7 11 11 C 1.50697 * 126.73304 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47120 * 155.00342 * 11 10 9 13 13 C 1.52997 * 109.47466 * 275.00589 * 11 10 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 11 16 16 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 17 17 C 1.52997 * 109.47415 * 180.02562 * 15 14 13 18 18 O 1.42892 * 109.47178 * 175.00180 * 17 15 14 19 19 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 20 20 C 1.52999 * 109.46961 * 35.00939 * 11 10 9 21 21 N 1.33778 * 106.53620 * 0.22902 * 10 9 8 22 22 N 1.28601 * 109.05959 * 359.62091 * 21 10 9 23 23 C 1.38830 * 119.86646 * 0.28016 * 7 6 5 24 24 C 1.38127 * 119.93260 * 359.44480 * 23 7 6 25 25 H 0.96695 * 114.00088 * 300.00233 * 1 2 3 26 26 H 1.09007 * 109.46874 * 119.99863 * 2 1 3 27 27 H 1.48497 * 110.00059 * 178.68196 * 3 2 1 28 28 H 1.48504 * 109.99743 * 299.99942 * 3 2 1 29 29 H 1.08005 * 119.96497 * 0.02562 * 5 4 2 30 30 H 1.08001 * 120.03514 * 180.02562 * 6 5 4 31 31 H 1.07995 * 126.97551 * 0.05235 * 9 8 7 32 32 H 1.09002 * 109.47153 * 59.99773 * 13 11 10 33 33 H 1.09001 * 109.46832 * 299.99964 * 13 11 10 34 34 H 1.08992 * 109.47399 * 59.99823 * 14 13 11 35 35 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.46818 * 295.00198 * 17 15 14 37 37 H 1.09001 * 109.47096 * 55.00094 * 17 15 14 38 38 H 0.96703 * 114.00148 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47153 * 60.00231 * 19 15 14 40 40 H 1.09001 * 109.47289 * 180.02562 * 19 15 14 41 41 H 1.09000 * 109.47486 * 59.99568 * 20 11 10 42 42 H 1.09002 * 109.46716 * 299.99650 * 20 11 10 43 43 H 1.07990 * 120.03047 * 179.72300 * 23 7 6 44 44 H 1.07994 * 119.96541 * 180.27962 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.5966 -2.0343 -1.4479 6 6 2.0559 -2.6883 -2.5744 7 6 2.8542 -2.0150 -3.4891 8 7 3.3217 -2.6761 -4.6341 9 6 4.1071 -2.1343 -5.6048 10 6 4.3140 -3.1181 -6.5114 11 6 5.1234 -3.0202 -7.7788 12 1 5.4777 -4.0116 -8.0612 13 6 4.2499 -2.4524 -8.8992 14 6 5.0716 -2.3536 -10.1861 15 6 6.2700 -1.4306 -9.9564 16 1 5.9161 -0.4391 -9.6741 17 6 7.0913 -1.3313 -11.2434 18 8 8.1429 -0.3804 -11.0652 19 6 7.1435 -1.9984 -8.8360 20 6 6.3216 -2.0970 -7.5486 21 7 3.6544 -4.1927 -6.0643 22 7 3.0822 -3.9008 -4.9503 23 6 3.1930 -0.6874 -3.2654 24 6 2.7259 -0.0370 -2.1399 25 1 -0.3933 0.4417 0.7650 26 1 1.7923 -0.5139 0.8901 27 1 3.5346 1.7703 0.0321 28 1 1.5615 2.4678 -1.2085 29 1 0.9752 -2.5575 -0.7361 30 1 1.7938 -3.7222 -2.7439 31 1 4.4882 -1.1246 -5.6437 32 1 3.8957 -1.4610 -8.6168 33 1 3.3963 -3.1102 -9.0632 34 1 5.4254 -3.3451 -10.4683 35 1 4.4493 -1.9487 -10.9842 36 1 7.5189 -2.3062 -11.4777 37 1 6.4468 -1.0111 -12.0620 38 1 8.7058 -0.2660 -11.8432 39 1 7.4974 -2.9900 -9.1182 40 1 7.9971 -1.3407 -8.6720 41 1 6.9439 -2.5014 -6.7504 42 1 5.9673 -1.1056 -7.2662 43 1 3.8175 -0.1624 -3.9730 44 1 2.9855 0.9970 -1.9677 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273910_12385126_14775216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:39:35 Heat of formation + Delta-G solvation = 38.092389 kcal Electronic energy + Delta-G solvation = -25720.183092 eV Core-core repulsion = 22026.800749 eV Total energy + Delta-G solvation = -3693.382343 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.70030 -40.92119 -40.02075 -37.86199 -37.43899 -35.82820 -33.99570 -32.65537 -31.88540 -31.68598 -30.85154 -27.32228 -26.75750 -24.67243 -24.38225 -23.57745 -23.07694 -22.10774 -21.49069 -20.61518 -19.70116 -18.40298 -18.19275 -17.71669 -17.16701 -16.92128 -16.68870 -16.29905 -16.03182 -15.83082 -15.28393 -15.23742 -15.02283 -14.85504 -14.66325 -14.27946 -14.07071 -13.95928 -13.86834 -13.55141 -13.22085 -13.11725 -12.72611 -12.58314 -12.50170 -12.27245 -12.17559 -12.06322 -11.95615 -11.86663 -11.45199 -11.23389 -11.18788 -10.79125 -10.43751 -10.40809 -10.32383 -9.74606 -4.92499 -0.71323 -0.05700 0.70906 1.03616 1.26698 1.28702 1.65973 1.95146 2.30287 2.95641 3.20058 3.31162 3.33936 3.45046 3.59092 3.71415 3.74717 3.77289 3.89282 3.95317 4.01942 4.08237 4.14620 4.21630 4.30027 4.38081 4.39423 4.45415 4.47543 4.53377 4.60086 4.63600 4.66321 4.74081 4.75703 4.83596 4.94128 4.99668 5.10368 5.12226 5.14865 5.18345 5.20878 5.27990 5.28886 5.43120 5.51889 5.62729 6.88347 6.90124 7.20498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.083 4.083 3 Si 0.771 3.229 4 C -0.075 4.075 5 C -0.072 4.072 6 C -0.107 4.107 7 C 0.104 3.896 8 N -0.242 5.242 9 C -0.039 4.039 10 C -0.010 4.010 11 C 0.004 3.996 12 H 0.084 0.916 13 C -0.103 4.103 14 C -0.107 4.107 15 C -0.087 4.087 16 H 0.072 0.928 17 C 0.076 3.924 18 O -0.595 6.595 19 C -0.105 4.105 20 C -0.106 4.106 21 N -0.290 5.290 22 N -0.111 5.111 23 C -0.104 4.104 24 C -0.113 4.113 25 H 0.406 0.594 26 H 0.102 0.898 27 H -0.282 1.282 28 H -0.293 1.293 29 H 0.156 0.844 30 H 0.141 0.859 31 H 0.227 0.773 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.395 0.605 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.164 0.836 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 6.283 3.168 7.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.192 4.192 3 Si 0.676 3.324 4 C -0.075 4.075 5 C -0.091 4.091 6 C -0.127 4.127 7 C 0.013 3.987 8 N -0.029 5.029 9 C -0.186 4.186 10 C -0.147 4.147 11 C -0.017 4.017 12 H 0.102 0.898 13 C -0.141 4.141 14 C -0.144 4.144 15 C -0.105 4.105 16 H 0.091 0.909 17 C -0.002 4.002 18 O -0.403 6.403 19 C -0.143 4.143 20 C -0.144 4.144 21 N -0.155 5.155 22 N -0.088 5.088 23 C -0.125 4.125 24 C -0.131 4.131 25 H 0.258 0.742 26 H 0.120 0.880 27 H -0.209 1.209 28 H -0.220 1.220 29 H 0.174 0.826 30 H 0.159 0.841 31 H 0.243 0.757 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.244 0.756 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.181 0.819 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.346 5.234 3.174 6.131 hybrid contribution 0.678 0.027 -1.083 1.278 sum 1.024 5.261 2.091 5.754 Atomic orbital electron populations 1.86434 1.16878 1.82509 1.51576 1.24875 0.86213 1.11279 0.96861 0.94034 0.77665 0.75328 0.85378 1.19976 0.96800 0.94577 0.96196 1.21141 0.97684 0.93805 0.96435 1.21175 0.96592 1.01338 0.93578 1.17903 1.01477 0.92909 0.86383 1.44772 1.32681 1.08973 1.16483 1.24071 1.00560 1.03717 0.90287 1.22422 1.02486 0.89618 1.00189 1.19556 0.93382 1.01149 0.87589 0.89814 1.21497 0.97485 1.01248 0.93891 1.21472 0.95807 1.00047 0.97120 1.21159 0.94986 0.99813 0.94573 0.90908 1.22292 0.88925 0.91763 0.97200 1.86419 1.46066 1.63685 1.44106 1.21470 0.97819 1.01147 0.93860 1.21593 0.95161 0.99514 0.98163 1.75042 1.10457 1.26139 1.03910 1.78326 1.21823 0.97112 1.11537 1.21032 1.00998 0.91297 0.99152 1.20942 0.98670 0.99764 0.93763 0.74218 0.88009 1.20857 1.22017 0.82609 0.84093 0.75682 0.91162 0.92425 0.91154 0.90625 0.93010 0.92875 0.75562 0.91897 0.91619 0.91690 0.90448 0.81879 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.97 12.74 -148.98 -1.90 0.07 16 2 C -0.08 0.35 2.81 71.24 0.20 0.56 16 3 Si 0.77 -4.43 29.78 68.60 2.04 -2.39 16 4 C -0.07 -0.08 5.43 -19.85 -0.11 -0.19 16 5 C -0.07 -0.14 9.60 22.25 0.21 0.08 16 6 C -0.11 -0.52 9.62 22.38 0.22 -0.30 16 7 C 0.10 0.54 6.68 38.08 0.25 0.80 16 8 N -0.24 -1.96 3.56 -187.05 -0.67 -2.62 16 9 C -0.04 -0.14 10.10 83.37 0.84 0.71 16 10 C -0.01 -0.07 6.16 41.60 0.26 0.19 16 11 C 0.00 0.01 2.65 -11.54 -0.03 -0.02 16 12 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 13 C -0.10 -0.01 5.19 30.59 0.16 0.15 16 14 C -0.11 0.24 5.20 30.60 0.16 0.40 16 15 C -0.09 0.12 2.43 -10.79 -0.03 0.09 16 16 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 17 C 0.08 -0.14 6.43 71.98 0.46 0.33 16 18 O -0.59 -0.37 13.20 -148.98 -1.97 -2.33 16 19 C -0.11 0.07 5.10 30.61 0.16 0.23 16 20 C -0.11 0.14 4.81 30.61 0.15 0.29 16 21 N -0.29 -4.05 12.39 -48.59 -0.60 -4.65 16 22 N -0.11 -1.53 12.42 37.02 0.46 -1.07 16 23 C -0.10 -0.08 9.46 22.39 0.21 0.13 16 24 C -0.11 -0.10 8.66 22.25 0.19 0.09 16 25 H 0.41 -5.58 8.74 -74.06 -0.65 -6.23 16 26 H 0.10 -0.86 7.96 -2.38 -0.02 -0.88 16 27 H -0.28 0.28 7.11 99.48 0.71 0.99 16 28 H -0.29 -0.46 7.11 99.48 0.71 0.25 16 29 H 0.16 -0.21 8.06 -2.91 -0.02 -0.23 16 30 H 0.14 0.77 7.69 -2.91 -0.02 0.75 16 31 H 0.23 -1.17 6.53 -2.91 -0.02 -1.19 16 32 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.39 -2.89 9.12 -74.05 -0.68 -3.56 16 39 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.07 0.09 7.82 -2.39 -0.02 0.07 16 41 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.08 -0.29 7.38 -2.39 -0.02 -0.31 16 43 H 0.16 -0.86 6.77 -2.92 -0.02 -0.88 16 44 H 0.14 -0.17 4.87 -2.91 -0.01 -0.19 16 Total: 0.00 -21.94 354.98 0.42 -21.52 By element: Atomic # 1 Polarization: -11.79 SS G_CDS: -0.26 Total: -12.05 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 3.31 Total: 3.52 kcal Atomic # 7 Polarization: -7.54 SS G_CDS: -0.81 Total: -8.34 kcal Atomic # 8 Polarization: 1.60 SS G_CDS: -3.86 Total: -2.26 kcal Atomic # 14 Polarization: -4.43 SS G_CDS: 2.04 Total: -2.39 kcal Total: -21.94 0.42 -21.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_12385126_14775216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.610 kcal (2) G-P(sol) polarization free energy of solvation -21.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds