Wall clock time and date at job start Mon Mar 8 2021 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86296 * 111.24324 * 2 1 4 4 C 1.89656 * 111.45650 * 125.06540 * 2 1 3 5 5 C 1.55919 * 99.38765 * 96.60726 * 4 2 1 6 6 C 1.53715 * 109.42933 * 40.60281 * 5 4 2 7 7 C 1.50701 * 109.02377 * 190.54729 * 6 5 4 8 8 C 1.35370 * 126.73075 * 36.47777 * 7 6 5 9 9 N 1.36111 * 106.05013 * 179.85575 * 8 7 6 10 10 C 1.40252 * 125.94365 * 180.17549 * 9 8 7 11 11 C 1.38817 * 120.06450 * 0.03796 * 10 9 8 12 12 C 1.38123 * 119.93671 * 179.69834 * 11 10 9 13 13 C 1.38278 * 120.06354 * 0.60010 * 12 11 10 14 14 C 1.50697 * 119.93579 * 179.70113 * 13 12 11 15 15 O 1.42900 * 109.47296 * 119.97380 * 14 13 12 16 16 Si 1.86302 * 109.47291 * 359.97316 * 14 13 12 17 17 H 1.48503 * 109.46675 * 60.00278 * 16 14 13 18 18 H 1.48494 * 109.47159 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46927 * 300.00463 * 16 14 13 20 20 C 1.38279 * 120.12703 * 359.67322 * 13 12 11 21 21 C 1.38120 * 120.06841 * 0.02562 * 20 13 12 22 22 N 1.28734 * 108.11591 * 0.41819 * 9 8 7 23 23 N 1.28601 * 110.23301 * 359.73562 * 22 9 8 24 24 C 1.55137 * 111.31656 * 310.98190 * 6 5 4 25 25 H 1.09001 * 109.47291 * 294.93625 * 1 2 3 26 26 H 1.08999 * 109.47173 * 54.93363 * 1 2 3 27 27 H 1.09003 * 109.47302 * 174.93193 * 1 2 3 28 28 H 1.08996 * 109.47255 * 185.06259 * 3 2 1 29 29 H 1.09003 * 109.47007 * 305.06826 * 3 2 1 30 30 H 1.09001 * 109.47144 * 65.05931 * 3 2 1 31 31 H 1.09002 * 111.42563 * 214.16489 * 4 2 1 32 32 H 1.09001 * 111.42941 * 339.05438 * 4 2 1 33 33 H 1.08998 * 109.47527 * 160.67009 * 5 4 2 34 34 H 1.08994 * 109.47076 * 280.62418 * 5 4 2 35 35 H 1.09001 * 109.11440 * 71.47534 * 6 5 4 36 36 H 1.08005 * 126.97532 * 0.02562 * 8 7 6 37 37 H 1.08004 * 120.02939 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.97316 * 180.29556 * 12 11 10 39 39 H 1.09007 * 109.46798 * 239.97074 * 14 13 12 40 40 H 0.96697 * 114.00552 * 300.00206 * 15 14 13 41 41 H 1.07999 * 119.96555 * 180.02562 * 20 13 12 42 42 H 1.08000 * 120.03336 * 180.02562 * 21 20 13 43 43 H 1.09002 * 111.05115 * 270.57358 * 24 6 5 44 44 H 1.08998 * 111.08657 * 146.62562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 2.8145 -2.3636 0.7076 6 6 3.3933 -2.0814 -0.6882 7 6 3.3964 -3.3597 -1.4863 8 6 2.4595 -4.3362 -1.4547 9 7 2.8763 -5.2864 -2.3355 10 6 2.2089 -6.4838 -2.6318 11 6 1.0085 -6.7849 -2.0029 12 6 0.3502 -7.9620 -2.3013 13 6 0.8921 -8.8459 -3.2162 14 6 0.1749 -10.1325 -3.5346 15 8 -0.1419 -10.1692 -4.9276 16 14 -1.3960 -10.2309 -2.5378 17 1 -2.2704 -9.0796 -2.8772 18 1 -2.1024 -11.4989 -2.8511 19 1 -1.0668 -10.1926 -1.0902 20 6 2.0905 -8.5514 -3.8400 21 6 2.7502 -7.3730 -3.5503 22 7 3.9924 -4.8973 -2.8456 23 7 4.3287 -3.7547 -2.3607 24 6 2.5557 -1.0143 -1.4408 25 1 -0.3634 0.4333 0.9319 26 1 -0.3633 0.5904 -0.8411 27 1 -0.3634 -1.0237 -0.0908 28 1 3.6237 1.7041 -0.0907 29 1 2.1193 2.2889 -0.8411 30 1 2.2658 2.2320 0.9318 31 1 3.4838 -0.5841 1.8241 32 1 1.8205 -1.1293 2.2402 33 1 3.5221 -2.9619 1.2816 34 1 1.8758 -2.9085 0.6083 35 1 4.4175 -1.7232 -0.5842 36 1 1.5617 -4.3559 -0.8545 37 1 0.5874 -6.0973 -1.2843 38 1 -0.5861 -8.1945 -1.8159 39 1 0.8168 -10.9775 -3.2856 40 1 -0.7115 -9.4449 -5.2207 41 1 2.5112 -9.2435 -4.5545 42 1 3.6860 -7.1433 -4.0381 43 1 1.7533 -1.4790 -2.0138 44 1 3.1877 -0.4010 -2.0831 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273910_12385126_17831524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:28 Heat of formation + Delta-G solvation = 50.154962 kcal Electronic energy + Delta-G solvation = -23651.898962 eV Core-core repulsion = 20308.590400 eV Total energy + Delta-G solvation = -3343.308562 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.143 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.43984 -40.90583 -38.08708 -37.34577 -35.39146 -32.71308 -31.82523 -31.55705 -29.62079 -29.24474 -28.53762 -27.22283 -25.56272 -24.44364 -24.19961 -22.83109 -21.89886 -20.67917 -19.59787 -18.53435 -17.49810 -17.17125 -16.48775 -16.43342 -16.19123 -16.00626 -15.77928 -15.47089 -15.22429 -14.66949 -14.38400 -14.20494 -13.99445 -13.96301 -13.82709 -13.68694 -13.56101 -13.33277 -13.28901 -12.77727 -12.65603 -12.54318 -12.44412 -12.27829 -12.22685 -11.99582 -11.83857 -11.79502 -11.44732 -10.92948 -10.73194 -10.62374 -10.42872 -10.34561 -10.09911 -9.63620 -0.59676 -0.00372 0.86276 0.98697 1.19461 1.28774 1.35683 1.46462 1.65919 1.77522 1.81590 1.84035 2.38273 2.48524 3.14931 3.26516 3.30806 3.47197 3.51573 3.79433 3.85329 3.97719 4.01483 4.13590 4.23749 4.27119 4.33491 4.42074 4.44220 4.52036 4.63574 4.64880 4.65632 4.68661 4.71104 4.72174 4.81155 4.99239 5.03042 5.08391 5.14182 5.17771 5.29990 5.36742 5.37013 5.42698 5.46014 5.49213 5.77125 6.37719 7.49219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.441 4.441 2 Si 0.966 3.034 3 C -0.443 4.443 4 C -0.395 4.395 5 C -0.111 4.111 6 C 0.001 3.999 7 C 0.006 3.994 8 C -0.052 4.052 9 N -0.245 5.245 10 C 0.129 3.871 11 C -0.113 4.113 12 C -0.104 4.104 13 C -0.112 4.112 14 C -0.082 4.082 15 O -0.536 6.536 16 Si 0.947 3.053 17 H -0.249 1.249 18 H -0.250 1.250 19 H -0.249 1.249 20 C -0.068 4.068 21 C -0.100 4.100 22 N -0.077 5.077 23 N -0.256 5.256 24 C -0.389 4.389 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.192 0.808 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.378 0.622 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.077 0.923 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 -0.093 2.742 5.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.549 4.549 2 Si 1.163 2.837 3 C -0.551 4.551 4 C -0.481 4.481 5 C -0.149 4.149 6 C -0.019 4.019 7 C -0.131 4.131 8 C -0.200 4.200 9 N -0.032 5.032 10 C 0.037 3.963 11 C -0.133 4.133 12 C -0.122 4.122 13 C -0.113 4.113 14 C -0.193 4.193 15 O -0.341 6.341 16 Si 0.769 3.231 17 H -0.173 1.173 18 H -0.174 1.174 19 H -0.172 1.172 20 C -0.087 4.087 21 C -0.120 4.120 22 N -0.054 5.054 23 N -0.123 5.123 24 C -0.475 4.475 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.209 0.791 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.225 0.775 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.095 0.905 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.168 -0.943 2.255 4.832 hybrid contribution -0.692 0.566 0.418 0.987 sum -4.859 -0.376 2.673 5.559 Atomic orbital electron populations 1.26005 1.19852 1.04495 1.04563 0.80558 0.67665 0.67573 0.67856 1.26010 1.06768 1.17819 1.04488 1.26631 1.06668 1.04981 1.09832 1.21973 1.01126 0.98115 0.93686 1.19900 1.01878 0.88380 0.91779 1.22056 0.92571 0.98364 1.00072 1.23481 1.04633 0.91163 1.00684 1.44643 1.16177 1.14604 1.27780 1.17705 0.93644 0.84726 1.00186 1.20812 0.93422 0.98455 1.00634 1.20909 0.99946 0.93407 0.97936 1.20548 0.96370 0.97073 0.97347 1.25029 1.07940 0.97119 0.89207 1.86543 1.72308 1.53131 1.22082 0.85706 0.76521 0.81754 0.79073 1.17303 1.17403 1.17249 1.21000 0.93496 0.95826 0.98366 1.21097 1.01146 0.93139 0.96572 1.78379 0.98431 1.08964 1.19675 1.75106 1.23547 1.03790 1.09863 1.26727 1.04735 1.05427 1.10629 0.91055 0.91122 0.91165 0.90900 0.91195 0.91077 0.90031 0.90099 0.91156 0.91659 0.88974 0.79106 0.84389 0.84817 0.85896 0.77473 0.83802 0.83581 0.90455 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.06 8.65 101.05 0.87 1.94 16 2 Si 0.97 -3.05 13.36 -169.99 -2.27 -5.32 16 3 C -0.44 0.83 8.65 101.05 0.87 1.70 16 4 C -0.39 0.93 5.95 38.72 0.23 1.16 16 5 C -0.11 0.16 5.06 -24.80 -0.13 0.04 16 6 C 0.00 0.00 2.81 -90.27 -0.25 -0.25 16 7 C 0.01 0.02 6.00 -82.77 -0.50 -0.48 16 8 C -0.05 -0.06 10.04 -16.68 -0.17 -0.23 16 9 N -0.24 -0.70 3.56 -10.47 -0.04 -0.74 16 10 C 0.13 0.14 6.68 -83.57 -0.56 -0.42 16 11 C -0.11 0.13 9.46 -39.41 -0.37 -0.24 16 12 C -0.10 0.19 8.66 -39.61 -0.34 -0.16 16 13 C -0.11 0.17 5.39 -104.59 -0.56 -0.40 16 14 C -0.08 0.19 2.82 36.00 0.10 0.29 16 15 O -0.54 0.72 12.77 -35.23 -0.45 0.27 16 16 Si 0.95 -2.22 25.07 -169.99 -4.26 -6.48 16 17 H -0.25 0.57 7.11 56.52 0.40 0.97 16 18 H -0.25 0.13 7.11 56.52 0.40 0.53 16 19 H -0.25 0.47 7.11 56.52 0.40 0.88 16 20 C -0.07 0.06 9.60 -39.61 -0.38 -0.32 16 21 C -0.10 -0.06 9.62 -39.41 -0.38 -0.44 16 22 N -0.08 -0.42 12.42 60.35 0.75 0.33 16 23 N -0.26 -1.51 12.39 33.29 0.41 -1.10 16 24 C -0.39 0.37 5.26 38.29 0.20 0.57 16 25 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.08 -0.17 8.06 -51.93 -0.42 -0.59 16 32 H 0.08 -0.22 8.06 -51.93 -0.42 -0.64 16 33 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 34 H 0.06 -0.18 6.84 -51.93 -0.36 -0.54 16 35 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.19 -0.53 6.31 -52.48 -0.33 -0.86 16 37 H 0.14 -0.49 6.77 -52.48 -0.36 -0.84 16 38 H 0.13 -0.45 4.87 -52.49 -0.26 -0.71 16 39 H 0.12 -0.38 7.96 -51.92 -0.41 -0.79 16 40 H 0.38 -1.69 8.70 45.56 0.40 -1.29 16 41 H 0.14 -0.28 8.06 -52.49 -0.42 -0.70 16 42 H 0.15 0.12 7.69 -52.49 -0.40 -0.29 16 43 H 0.08 -0.05 7.83 -51.93 -0.41 -0.45 16 44 H 0.08 -0.04 8.04 -51.93 -0.42 -0.46 16 LS Contribution 358.78 15.07 5.41 5.41 Total: 0.00 -7.09 358.78 -7.73 -14.82 By element: Atomic # 1 Polarization: -4.04 SS G_CDS: -5.92 Total: -9.96 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.36 Total: 2.77 kcal Atomic # 7 Polarization: -2.63 SS G_CDS: 1.12 Total: -1.51 kcal Atomic # 8 Polarization: 0.72 SS G_CDS: -0.45 Total: 0.27 kcal Atomic # 14 Polarization: -5.26 SS G_CDS: -6.53 Total: -11.80 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -7.09 -7.73 -14.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_12385126_17831524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.975 kcal (2) G-P(sol) polarization free energy of solvation -7.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds