Wall clock time and date at job start Mon Mar 8 2021 06:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86306 * 111.24181 * 2 1 4 4 C 1.89332 * 111.46249 * 234.86379 * 2 1 3 5 5 C 1.55149 * 101.34979 * 239.14567 * 4 2 1 6 6 C 1.53575 * 111.28944 * 28.58079 * 5 4 2 7 7 C 1.50703 * 109.47395 * 190.93873 * 6 5 4 8 8 C 1.35374 * 126.72780 * 35.05001 * 7 6 5 9 9 N 1.36113 * 106.04521 * 179.97438 * 8 7 6 10 10 C 1.40251 * 125.93724 * 179.97438 * 9 8 7 11 11 C 1.38795 * 120.06801 * 0.03148 * 10 9 8 12 12 C 1.38146 * 119.93742 * 179.97438 * 11 10 9 13 13 C 1.38256 * 120.06203 * 0.02562 * 12 11 10 14 14 C 1.38299 * 120.13005 * 359.69983 * 13 12 11 15 15 C 1.38098 * 120.06435 * 0.55490 * 14 13 12 16 16 C 1.50707 * 120.03061 * 179.75026 * 15 14 13 17 17 O 1.42903 * 109.46442 * 254.72257 * 16 15 14 18 18 Si 1.86293 * 109.47256 * 14.71823 * 16 15 14 19 19 H 1.48499 * 109.47512 * 300.00264 * 18 16 15 20 20 H 1.48505 * 109.47075 * 60.00390 * 18 16 15 21 21 H 1.48499 * 109.47038 * 180.02562 * 18 16 15 22 22 N 1.28728 * 108.12150 * 0.26291 * 9 8 7 23 23 N 1.28611 * 110.22829 * 359.56159 * 22 9 8 24 24 C 1.55913 * 109.50853 * 310.96638 * 6 5 4 25 25 H 1.08997 * 109.47067 * 294.92996 * 1 2 3 26 26 H 1.08997 * 109.47168 * 54.93565 * 1 2 3 27 27 H 1.09006 * 109.47237 * 174.93171 * 1 2 3 28 28 H 1.08994 * 109.47436 * 185.06636 * 3 2 1 29 29 H 1.08999 * 109.46957 * 305.06909 * 3 2 1 30 30 H 1.08994 * 109.46865 * 65.06325 * 3 2 1 31 31 H 1.09008 * 111.04774 * 357.15438 * 4 2 1 32 32 H 1.08998 * 111.05403 * 121.08409 * 4 2 1 33 33 H 1.08997 * 109.12139 * 268.10371 * 5 4 2 34 34 H 1.08993 * 109.12877 * 149.06682 * 5 4 2 35 35 H 1.09005 * 109.43053 * 70.96667 * 6 5 4 36 36 H 1.07995 * 126.97354 * 0.02562 * 8 7 6 37 37 H 1.08006 * 120.02862 * 359.97438 * 11 10 9 38 38 H 1.07999 * 119.96876 * 179.97438 * 12 11 10 39 39 H 1.07995 * 119.93080 * 179.97438 * 13 12 11 40 40 H 1.07997 * 119.96806 * 180.27887 * 14 13 12 41 41 H 1.08999 * 109.47345 * 134.72327 * 16 15 14 42 42 H 0.96700 * 114.00311 * 60.00230 * 17 16 15 43 43 H 1.08999 * 111.42546 * 158.14636 * 24 6 5 44 44 H 1.09000 * 111.42931 * 283.08776 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5379 1.7365 0.0000 4 6 2.5557 -1.0141 -1.4410 5 6 3.3935 -2.0813 -0.6884 6 6 2.8149 -2.3627 0.7061 7 6 3.7938 -3.1902 1.4986 8 6 5.1445 -3.1138 1.4494 9 7 5.6062 -4.0435 2.3299 10 6 6.9536 -4.3162 2.6078 11 6 7.9548 -3.6071 1.9589 12 6 9.2811 -3.8777 2.2351 13 6 9.6115 -4.8541 3.1564 14 6 8.6159 -5.5584 3.8087 15 6 7.2884 -5.2959 3.5329 16 6 6.2042 -6.0678 4.2400 17 8 5.6349 -7.0215 3.3409 18 14 6.9304 -6.9551 5.7083 19 1 7.9857 -7.8929 5.2479 20 1 7.5221 -5.9640 6.6426 21 1 5.8621 -7.7161 6.4047 22 7 4.5913 -4.6329 2.8586 23 7 3.4985 -4.1439 2.3889 24 6 2.5569 -1.0140 1.4447 25 1 -0.3633 0.4332 0.9319 26 1 -0.3633 0.5904 -0.8411 27 1 -0.3634 -1.0237 -0.0908 28 1 3.6236 1.7043 -0.0907 29 1 2.1192 2.2890 -0.8411 30 1 2.2657 2.2320 0.9318 31 1 1.7533 -1.4791 -2.0139 32 1 3.1877 -0.4008 -2.0832 33 1 4.4176 -1.7230 -0.5843 34 1 3.3973 -3.0052 -1.2665 35 1 1.8761 -2.9076 0.6060 36 1 5.7356 -2.4494 0.8366 37 1 7.6973 -2.8445 1.2387 38 1 10.0606 -3.3265 1.7302 39 1 10.6489 -5.0641 3.3704 40 1 8.8769 -6.3174 4.5313 41 1 5.4296 -5.3795 4.5780 42 1 6.2685 -7.6672 2.9994 43 1 1.8203 -1.1300 2.2397 44 1 3.4838 -0.5841 1.8240 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273910_15259592_17831524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:28:40 Heat of formation + Delta-G solvation = 61.690528 kcal Electronic energy + Delta-G solvation = -24433.286496 eV Core-core repulsion = 21090.478153 eV Total energy + Delta-G solvation = -3342.808342 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.33536 -40.84730 -37.59222 -37.36196 -35.37314 -33.06825 -31.65364 -31.04441 -29.51397 -29.19544 -28.49272 -27.08906 -25.49985 -24.96398 -23.49391 -22.86910 -21.91554 -20.52478 -19.45419 -18.11836 -17.48303 -17.17705 -16.57433 -16.31128 -16.04531 -15.79545 -15.71723 -15.43008 -15.05340 -14.59977 -14.29030 -14.15407 -13.96055 -13.93945 -13.69762 -13.53619 -13.47351 -13.28235 -13.13271 -12.81545 -12.76956 -12.41174 -12.34683 -12.14814 -11.93608 -11.89336 -11.73385 -11.51548 -11.33866 -10.88209 -10.66188 -10.41854 -10.31077 -10.25532 -9.96333 -9.58621 -0.47674 -0.06247 1.02586 1.12763 1.31140 1.37526 1.49994 1.54895 1.75958 1.86625 1.88851 1.91398 2.42753 2.52753 3.24286 3.37250 3.41831 3.66998 3.73144 3.83871 3.89722 4.05157 4.06583 4.19134 4.24344 4.33842 4.37532 4.47628 4.51237 4.60260 4.68668 4.70243 4.71555 4.74818 4.76159 4.84531 4.97603 5.04553 5.11985 5.14351 5.15633 5.22436 5.36645 5.40047 5.42540 5.47682 5.50218 5.54336 5.89687 6.66649 7.65876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.966 3.034 3 C -0.441 4.441 4 C -0.396 4.396 5 C -0.108 4.108 6 C -0.002 4.002 7 C 0.007 3.993 8 C -0.058 4.058 9 N -0.245 5.245 10 C 0.148 3.852 11 C -0.119 4.119 12 C -0.092 4.092 13 C -0.105 4.105 14 C -0.109 4.109 15 C -0.105 4.105 16 C -0.079 4.079 17 O -0.517 6.517 18 Si 0.945 3.055 19 H -0.251 1.251 20 H -0.249 1.249 21 H -0.248 1.248 22 N -0.048 5.048 23 N -0.263 5.263 24 C -0.387 4.387 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.189 0.811 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.367 0.633 43 H 0.082 0.918 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.113 2.977 -2.053 6.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.164 2.836 3 C -0.549 4.549 4 C -0.482 4.482 5 C -0.146 4.146 6 C -0.022 4.022 7 C -0.129 4.129 8 C -0.205 4.205 9 N -0.032 5.032 10 C 0.056 3.944 11 C -0.140 4.140 12 C -0.111 4.111 13 C -0.124 4.124 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.190 4.190 17 O -0.320 6.320 18 Si 0.767 3.233 19 H -0.175 1.175 20 H -0.173 1.173 21 H -0.171 1.171 22 N -0.026 5.026 23 N -0.130 5.130 24 C -0.473 4.473 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.206 0.794 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.212 0.788 43 H 0.101 0.899 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.341 1.850 -0.214 4.723 hybrid contribution 0.996 0.645 -1.274 1.741 sum 5.336 2.494 -1.488 6.075 Atomic orbital electron populations 1.26012 1.19813 1.04736 1.04505 0.80551 0.67821 0.67375 0.67864 1.26002 1.06518 1.17918 1.04503 1.26466 1.05265 1.06451 1.10058 1.21736 0.99476 0.99642 0.93715 1.20016 0.96236 0.93982 0.92011 1.21921 0.92382 0.98621 0.99958 1.23428 0.96022 0.99979 1.01079 1.44643 1.06080 1.24624 1.27865 1.17482 0.79104 0.98555 0.99245 1.20986 0.92135 1.00326 1.00540 1.21119 0.95234 0.97349 0.97370 1.21331 1.00064 0.95282 0.95682 1.21137 0.91288 1.00181 1.00106 1.20268 0.95882 0.97006 0.97563 1.25188 0.98710 0.95101 0.99983 1.86714 1.37408 1.43418 1.64465 0.85816 0.79653 0.80439 0.77344 1.17514 1.17250 1.17122 1.78634 0.88157 1.17184 1.18576 1.75145 1.18428 1.09236 1.10178 1.26879 1.06616 1.03289 1.10504 0.91106 0.91135 0.90905 0.91111 0.91155 0.91126 0.90268 0.90137 0.91871 0.91500 0.88915 0.79400 0.84527 0.84170 0.84456 0.84569 0.85148 0.78781 0.89946 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.64 8.65 101.05 0.87 1.51 16 2 Si 0.97 -2.62 13.36 -169.99 -2.27 -4.89 16 3 C -0.44 0.86 8.65 101.05 0.87 1.73 16 4 C -0.40 0.76 5.85 38.29 0.22 0.98 16 5 C -0.11 0.10 5.20 -25.30 -0.13 -0.04 16 6 C 0.00 0.00 2.63 -89.92 -0.24 -0.24 16 7 C 0.01 0.02 6.16 -82.77 -0.51 -0.49 16 8 C -0.06 -0.11 10.04 -16.67 -0.17 -0.27 16 9 N -0.24 -0.84 3.56 -10.47 -0.04 -0.88 16 10 C 0.15 0.23 6.67 -83.57 -0.56 -0.32 16 11 C -0.12 0.12 9.46 -39.41 -0.37 -0.25 16 12 C -0.09 0.22 10.04 -39.61 -0.40 -0.18 16 13 C -0.10 0.23 10.04 -39.55 -0.40 -0.17 16 14 C -0.11 0.10 8.66 -39.61 -0.34 -0.24 16 15 C -0.10 -0.11 5.28 -104.45 -0.55 -0.66 16 16 C -0.08 -0.13 1.75 36.01 0.06 -0.07 16 17 O -0.52 -1.36 11.81 -35.23 -0.42 -1.78 16 18 Si 0.95 0.15 25.48 -169.99 -4.33 -4.18 16 19 H -0.25 0.20 6.74 56.52 0.38 0.58 16 20 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 21 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 22 N -0.05 -0.29 8.63 60.35 0.52 0.23 16 23 N -0.26 -1.70 12.39 33.29 0.41 -1.29 16 24 C -0.39 0.22 5.27 38.71 0.20 0.42 16 25 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 26 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.08 -0.14 8.04 -51.92 -0.42 -0.56 16 32 H 0.08 -0.19 8.04 -51.93 -0.42 -0.60 16 33 H 0.06 -0.13 6.80 -51.93 -0.35 -0.48 16 34 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 35 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.19 -0.37 6.27 -52.49 -0.33 -0.70 16 37 H 0.14 -0.43 6.77 -52.48 -0.36 -0.78 16 38 H 0.14 -0.66 8.06 -52.49 -0.42 -1.09 16 39 H 0.14 -0.61 8.06 -52.49 -0.42 -1.03 16 40 H 0.14 -0.31 4.89 -52.49 -0.26 -0.57 16 41 H 0.13 0.44 6.10 -51.93 -0.32 0.12 16 42 H 0.37 -0.44 8.70 45.56 0.40 -0.05 16 43 H 0.08 0.01 8.06 -51.93 -0.42 -0.41 16 44 H 0.08 -0.04 8.02 -51.93 -0.42 -0.46 16 LS Contribution 352.40 15.07 5.31 5.31 Total: 0.00 -7.37 352.40 -8.11 -15.48 By element: Atomic # 1 Polarization: -3.85 SS G_CDS: -5.87 Total: -9.73 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.42 Total: 1.72 kcal Atomic # 7 Polarization: -2.83 SS G_CDS: 0.90 Total: -1.93 kcal Atomic # 8 Polarization: -1.36 SS G_CDS: -0.42 Total: -1.78 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: -6.60 Total: -9.07 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -7.37 -8.11 -15.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_15259592_17831524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.167 kcal (2) G-P(sol) polarization free energy of solvation -7.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds