Wall clock time and date at job start Mon Mar 8 2021 06:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86306 * 111.24181 * 2 1 4 4 C 1.89332 * 111.46249 * 234.86379 * 2 1 3 5 5 C 1.55149 * 101.34979 * 239.14567 * 4 2 1 6 6 C 1.53575 * 111.28944 * 28.58079 * 5 4 2 7 7 C 1.50703 * 109.47395 * 190.93873 * 6 5 4 8 8 C 1.35374 * 126.72780 * 35.05001 * 7 6 5 9 9 N 1.36113 * 106.04521 * 179.97438 * 8 7 6 10 10 C 1.40251 * 125.93724 * 179.97438 * 9 8 7 11 11 C 1.38795 * 120.06801 * 0.03148 * 10 9 8 12 12 C 1.38146 * 119.93742 * 179.97438 * 11 10 9 13 13 C 1.38256 * 120.06203 * 0.02562 * 12 11 10 14 14 C 1.38299 * 120.13005 * 359.69983 * 13 12 11 15 15 C 1.38098 * 120.06435 * 0.55490 * 14 13 12 16 16 C 1.50707 * 120.03061 * 179.75026 * 15 14 13 17 17 O 1.42903 * 109.46442 * 254.72257 * 16 15 14 18 18 Si 1.86293 * 109.47256 * 14.71823 * 16 15 14 19 19 H 1.48499 * 109.47512 * 300.00264 * 18 16 15 20 20 H 1.48505 * 109.47075 * 60.00390 * 18 16 15 21 21 H 1.48499 * 109.47038 * 180.02562 * 18 16 15 22 22 N 1.28728 * 108.12150 * 0.26291 * 9 8 7 23 23 N 1.28611 * 110.22829 * 359.56159 * 22 9 8 24 24 C 1.55913 * 109.50853 * 310.96638 * 6 5 4 25 25 H 1.08997 * 109.47067 * 294.92996 * 1 2 3 26 26 H 1.08997 * 109.47168 * 54.93565 * 1 2 3 27 27 H 1.09006 * 109.47237 * 174.93171 * 1 2 3 28 28 H 1.08994 * 109.47436 * 185.06636 * 3 2 1 29 29 H 1.08999 * 109.46957 * 305.06909 * 3 2 1 30 30 H 1.08994 * 109.46865 * 65.06325 * 3 2 1 31 31 H 1.09008 * 111.04774 * 357.15438 * 4 2 1 32 32 H 1.08998 * 111.05403 * 121.08409 * 4 2 1 33 33 H 1.08997 * 109.12139 * 268.10371 * 5 4 2 34 34 H 1.08993 * 109.12877 * 149.06682 * 5 4 2 35 35 H 1.09005 * 109.43053 * 70.96667 * 6 5 4 36 36 H 1.07995 * 126.97354 * 0.02562 * 8 7 6 37 37 H 1.08006 * 120.02862 * 359.97438 * 11 10 9 38 38 H 1.07999 * 119.96876 * 179.97438 * 12 11 10 39 39 H 1.07995 * 119.93080 * 179.97438 * 13 12 11 40 40 H 1.07997 * 119.96806 * 180.27887 * 14 13 12 41 41 H 1.08999 * 109.47345 * 134.72327 * 16 15 14 42 42 H 0.96700 * 114.00311 * 60.00230 * 17 16 15 43 43 H 1.08999 * 111.42546 * 158.14636 * 24 6 5 44 44 H 1.09000 * 111.42931 * 283.08776 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5379 1.7365 0.0000 4 6 2.5557 -1.0141 -1.4410 5 6 3.3935 -2.0813 -0.6884 6 6 2.8149 -2.3627 0.7061 7 6 3.7938 -3.1902 1.4986 8 6 5.1445 -3.1138 1.4494 9 7 5.6062 -4.0435 2.3299 10 6 6.9536 -4.3162 2.6078 11 6 7.9548 -3.6071 1.9589 12 6 9.2811 -3.8777 2.2351 13 6 9.6115 -4.8541 3.1564 14 6 8.6159 -5.5584 3.8087 15 6 7.2884 -5.2959 3.5329 16 6 6.2042 -6.0678 4.2400 17 8 5.6349 -7.0215 3.3409 18 14 6.9304 -6.9551 5.7083 19 1 7.9857 -7.8929 5.2479 20 1 7.5221 -5.9640 6.6426 21 1 5.8621 -7.7161 6.4047 22 7 4.5913 -4.6329 2.8586 23 7 3.4985 -4.1439 2.3889 24 6 2.5569 -1.0140 1.4447 25 1 -0.3633 0.4332 0.9319 26 1 -0.3633 0.5904 -0.8411 27 1 -0.3634 -1.0237 -0.0908 28 1 3.6236 1.7043 -0.0907 29 1 2.1192 2.2890 -0.8411 30 1 2.2657 2.2320 0.9318 31 1 1.7533 -1.4791 -2.0139 32 1 3.1877 -0.4008 -2.0832 33 1 4.4176 -1.7230 -0.5843 34 1 3.3973 -3.0052 -1.2665 35 1 1.8761 -2.9076 0.6060 36 1 5.7356 -2.4494 0.8366 37 1 7.6973 -2.8445 1.2387 38 1 10.0606 -3.3265 1.7302 39 1 10.6489 -5.0641 3.3704 40 1 8.8769 -6.3174 4.5313 41 1 5.4296 -5.3795 4.5780 42 1 6.2685 -7.6672 2.9994 43 1 1.8203 -1.1300 2.2397 44 1 3.4838 -0.5841 1.8240 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273910_15259592_17831524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:28:40 Heat of formation + Delta-G solvation = 67.750338 kcal Electronic energy + Delta-G solvation = -24433.023723 eV Core-core repulsion = 21090.478153 eV Total energy + Delta-G solvation = -3342.545569 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.51974 -40.78400 -37.67012 -37.38137 -35.45492 -33.02719 -31.71378 -31.03674 -29.47729 -29.04723 -28.33568 -27.11668 -25.48984 -25.00271 -23.51899 -22.87125 -21.92479 -20.55851 -19.48295 -18.15961 -17.63952 -17.14963 -16.57026 -16.29818 -16.01908 -15.86952 -15.71167 -15.40281 -14.99548 -14.59826 -14.24949 -14.11887 -13.82560 -13.80236 -13.60359 -13.43197 -13.39843 -13.13879 -13.10585 -12.72923 -12.67198 -12.42932 -12.34166 -12.20389 -12.01706 -11.94466 -11.84137 -11.57442 -11.34637 -10.73282 -10.66033 -10.38621 -10.28082 -10.14353 -10.02483 -9.61228 -0.47108 0.06772 0.96584 1.07277 1.26276 1.34351 1.43611 1.44872 1.78943 1.85971 2.03219 2.08723 2.53333 2.64788 3.21686 3.37861 3.48409 3.67860 3.80675 3.88851 3.97559 4.14538 4.17581 4.21138 4.28305 4.34584 4.42795 4.53106 4.59277 4.63909 4.75432 4.82330 4.83745 4.85977 4.90046 4.91482 5.06347 5.09445 5.17674 5.24225 5.25389 5.31536 5.38753 5.50765 5.52143 5.57627 5.63590 5.68909 5.86806 6.71286 7.42710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.047 2.953 3 C -0.450 4.450 4 C -0.402 4.402 5 C -0.105 4.105 6 C -0.004 4.004 7 C -0.007 4.007 8 C -0.053 4.053 9 N -0.241 5.241 10 C 0.110 3.890 11 C -0.117 4.117 12 C -0.089 4.089 13 C -0.099 4.099 14 C -0.116 4.116 15 C -0.119 4.119 16 C -0.087 4.087 17 O -0.541 6.541 18 Si 0.987 3.013 19 H -0.227 1.227 20 H -0.252 1.252 21 H -0.281 1.281 22 N -0.081 5.081 23 N -0.311 5.311 24 C -0.404 4.404 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.227 0.773 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.149 0.851 41 H 0.103 0.897 42 H 0.380 0.620 43 H 0.067 0.933 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.897 4.279 -3.342 9.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.240 2.760 3 C -0.558 4.558 4 C -0.488 4.488 5 C -0.143 4.143 6 C -0.024 4.024 7 C -0.144 4.144 8 C -0.200 4.200 9 N -0.029 5.029 10 C 0.019 3.981 11 C -0.137 4.137 12 C -0.107 4.107 13 C -0.117 4.117 14 C -0.135 4.135 15 C -0.121 4.121 16 C -0.197 4.197 17 O -0.346 6.346 18 Si 0.809 3.191 19 H -0.150 1.150 20 H -0.176 1.176 21 H -0.207 1.207 22 N -0.058 5.058 23 N -0.177 5.177 24 C -0.487 4.487 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.243 0.757 37 H 0.175 0.825 38 H 0.189 0.811 39 H 0.183 0.817 40 H 0.166 0.834 41 H 0.121 0.879 42 H 0.228 0.772 43 H 0.086 0.914 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.140 3.121 -1.492 7.934 hybrid contribution 0.173 0.240 -0.855 0.905 sum 7.313 3.361 -2.347 8.383 Atomic orbital electron populations 1.26255 1.21718 1.04387 1.04517 0.79357 0.65571 0.65929 0.65172 1.26101 1.07040 1.18137 1.04556 1.26560 1.05406 1.06322 1.10483 1.21718 1.00532 0.99720 0.92379 1.20142 0.95273 0.94037 0.92985 1.22442 0.93795 0.98394 0.99793 1.24000 0.95825 0.99653 1.00565 1.44871 1.06521 1.24161 1.27313 1.17941 0.78685 1.00342 1.01086 1.21325 0.92128 1.00069 1.00219 1.21533 0.95215 0.97052 0.96908 1.21744 1.01071 0.94277 0.94590 1.21323 0.90632 1.00842 1.00654 1.20323 0.96462 0.97345 0.97994 1.25301 0.98380 0.95062 1.00934 1.86668 1.38819 1.44130 1.65030 0.85245 0.78709 0.79689 0.75508 1.14977 1.17573 1.20664 1.78602 0.88748 1.18535 1.19915 1.75077 1.19531 1.11092 1.12004 1.27146 1.06659 1.03471 1.11472 0.91444 0.90691 0.91560 0.90516 0.90763 0.91377 0.90403 0.88839 0.90181 0.92478 0.90299 0.75703 0.82476 0.81130 0.81655 0.83395 0.87945 0.77242 0.91420 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.09 8.65 113.37 0.98 2.08 16 2 Si 1.05 -5.96 13.36 68.60 0.92 -5.05 16 3 C -0.45 2.31 8.65 113.37 0.98 3.29 16 4 C -0.40 1.88 5.85 72.72 0.43 2.31 16 5 C -0.11 0.19 5.20 31.52 0.16 0.36 16 6 C 0.00 -0.01 2.63 -10.34 -0.03 -0.04 16 7 C -0.01 -0.06 6.16 41.60 0.26 0.19 16 8 C -0.05 -0.24 10.04 83.37 0.84 0.60 16 9 N -0.24 -2.09 3.56 -187.05 -0.67 -2.75 16 10 C 0.11 0.42 6.67 38.07 0.25 0.68 16 11 C -0.12 0.40 9.46 22.38 0.21 0.61 16 12 C -0.09 0.66 10.04 22.25 0.22 0.88 16 13 C -0.10 0.67 10.04 22.29 0.22 0.89 16 14 C -0.12 0.32 8.66 22.25 0.19 0.51 16 15 C -0.12 -0.35 5.28 -19.75 -0.10 -0.45 16 16 C -0.09 -0.50 1.75 71.24 0.12 -0.38 16 17 O -0.54 -4.38 11.81 -148.98 -1.76 -6.14 16 18 Si 0.99 1.32 25.48 68.60 1.75 3.07 16 19 H -0.23 0.63 6.74 99.48 0.67 1.30 16 20 H -0.25 -0.37 7.11 99.48 0.71 0.33 16 21 H -0.28 -1.80 7.11 99.48 0.71 -1.10 16 22 N -0.08 -1.25 8.63 37.02 0.32 -0.93 16 23 N -0.31 -5.18 12.39 -48.59 -0.60 -5.78 16 24 C -0.40 -0.04 5.27 72.99 0.38 0.35 16 25 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 26 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 27 H 0.07 -0.07 7.96 -2.38 -0.02 -0.09 16 28 H 0.08 -0.45 7.96 -2.39 -0.02 -0.47 16 29 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 30 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 31 H 0.08 -0.31 8.04 -2.38 -0.02 -0.33 16 32 H 0.09 -0.63 8.04 -2.39 -0.02 -0.65 16 33 H 0.08 -0.43 6.80 -2.39 -0.02 -0.45 16 34 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 36 H 0.23 -1.17 6.27 -2.91 -0.02 -1.19 16 37 H 0.16 -1.34 6.77 -2.91 -0.02 -1.36 16 38 H 0.17 -2.30 8.06 -2.91 -0.02 -2.33 16 39 H 0.17 -2.07 8.06 -2.91 -0.02 -2.09 16 40 H 0.15 -0.87 4.89 -2.91 -0.01 -0.88 16 41 H 0.10 1.12 6.10 -2.39 -0.01 1.10 16 42 H 0.38 -0.13 8.70 -74.06 -0.64 -0.77 16 43 H 0.07 0.18 8.06 -2.39 -0.02 0.16 16 44 H 0.08 -0.04 8.02 -2.39 -0.02 -0.06 16 Total: 0.00 -21.45 352.40 6.17 -15.29 By element: Atomic # 1 Polarization: -10.67 SS G_CDS: 1.08 Total: -9.58 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 5.13 Total: 11.87 kcal Atomic # 7 Polarization: -8.51 SS G_CDS: -0.95 Total: -9.46 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -1.76 Total: -6.14 kcal Atomic # 14 Polarization: -4.65 SS G_CDS: 2.66 Total: -1.98 kcal Total: -21.45 6.17 -15.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_15259592_17831524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.037 kcal (2) G-P(sol) polarization free energy of solvation -21.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds