Wall clock time and date at job start Mon Mar 8 2021 06:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00892 * 1 3 3 H 1.00904 * 109.47042 * 1 2 4 4 H 1.00899 * 109.47938 * 239.99840 * 1 2 3 5 5 C 1.46901 * 109.46972 * 119.99396 * 1 2 3 6 6 C 1.53010 * 109.46793 * 60.00595 * 5 1 2 7 7 H 1.09001 * 109.46828 * 54.99619 * 6 5 1 8 8 C 1.52993 * 109.47199 * 175.00170 * 6 5 1 9 9 C 1.52997 * 109.47328 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47135 * 299.99782 * 9 8 6 11 11 H 1.09004 * 109.47361 * 300.00146 * 10 9 8 12 12 C 1.50693 * 109.47489 * 179.97438 * 10 9 8 13 13 C 1.35365 * 126.73239 * 275.00117 * 12 10 9 14 14 N 1.36121 * 106.05259 * 179.97438 * 13 12 10 15 15 C 1.40242 * 125.94440 * 180.02562 * 14 13 12 16 16 C 1.38808 * 120.06598 * 180.28210 * 15 14 13 17 17 C 1.50693 * 120.03170 * 359.96803 * 16 15 14 18 18 O 1.42905 * 109.47103 * 75.28249 * 17 16 15 19 19 Si 1.86298 * 109.47215 * 195.27914 * 17 16 15 20 20 C 1.38145 * 119.93377 * 180.25193 * 16 15 14 21 21 C 1.38255 * 120.06617 * 359.46225 * 20 16 15 22 22 C 1.38300 * 120.13030 * 0.25954 * 21 20 16 23 23 C 1.38104 * 120.06601 * 0.02562 * 22 21 20 24 24 N 1.28734 * 108.11314 * 0.26505 * 14 13 12 25 25 N 1.28601 * 110.23363 * 359.55569 * 24 14 13 26 26 C 1.53005 * 109.46919 * 59.99630 * 10 9 8 27 27 C 1.52997 * 109.47519 * 300.00135 * 26 10 9 28 28 H 1.08997 * 109.47489 * 300.00929 * 5 1 2 29 29 H 1.09001 * 109.47211 * 179.97438 * 5 1 2 30 30 H 1.09000 * 109.47334 * 59.99555 * 8 6 5 31 31 H 1.09007 * 109.47110 * 299.99572 * 8 6 5 32 32 H 1.09001 * 109.47730 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47193 * 59.99571 * 9 8 6 34 34 H 1.08001 * 126.98019 * 359.97438 * 13 12 10 35 35 H 1.08997 * 109.47289 * 315.28218 * 17 16 15 36 36 H 0.96700 * 113.99926 * 180.02562 * 18 17 16 37 37 H 1.48497 * 110.00145 * 178.68674 * 19 17 16 38 38 H 1.48510 * 110.00070 * 300.00208 * 19 17 16 39 39 H 1.08002 * 119.96985 * 179.74790 * 20 16 15 40 40 H 1.07998 * 119.93678 * 180.23482 * 21 20 16 41 41 H 1.07997 * 119.96930 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.03683 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47058 * 60.00426 * 26 10 9 44 44 H 1.08997 * 109.47067 * 180.02562 * 26 10 9 45 45 H 1.09000 * 109.47193 * 300.00208 * 27 26 10 46 46 H 1.08995 * 109.47356 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0089 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3365 -0.4756 0.8238 5 6 -0.4896 -0.6924 -1.1995 6 6 0.0203 -2.1350 -1.1995 7 1 -0.2681 -2.6223 -0.2681 8 6 -0.5896 -2.8915 -2.3812 9 6 -0.0792 -4.3339 -2.3816 10 6 1.4456 -4.3352 -2.5075 11 1 1.7338 -3.8476 -3.4388 12 6 1.9485 -5.7558 -2.5073 13 6 2.2188 -6.5187 -1.4223 14 7 2.6431 -7.7195 -1.9028 15 6 3.0334 -8.8236 -1.1311 16 6 3.4527 -9.9924 -1.7515 17 6 3.4885 -10.0768 -3.2556 18 8 4.6124 -9.3438 -3.7472 19 14 3.6352 -11.8601 -3.7742 20 6 3.8315 -11.0801 -0.9887 21 6 3.8039 -11.0016 0.3913 22 6 3.3921 -9.8365 1.0123 23 6 3.0066 -8.7478 0.2551 24 7 2.6288 -7.6637 -3.1888 25 7 2.2148 -6.5105 -3.5793 26 6 2.0556 -3.5786 -1.3258 27 6 1.5452 -2.1362 -1.3254 28 1 -0.1262 -0.1786 -2.0895 29 1 -1.5796 -0.6928 -1.1993 30 1 -0.3012 -2.4042 -3.3125 31 1 -1.6760 -2.8903 -2.2917 32 1 -0.5140 -4.8731 -3.2232 33 1 -0.3672 -4.8215 -1.4502 34 1 2.1182 -6.2328 -0.3857 35 1 2.5714 -9.6536 -3.6652 36 1 4.6982 -9.3545 -4.7104 37 1 3.6396 -11.9595 -5.2558 38 1 4.8818 -12.4488 -3.2220 39 1 4.1540 -11.9911 -1.4708 40 1 4.1041 -11.8519 0.9856 41 1 3.3711 -9.7782 2.0905 42 1 2.6847 -7.8384 0.7405 43 1 1.7676 -4.0662 -0.3945 44 1 3.1419 -3.5791 -1.4157 45 1 1.8332 -1.6486 -2.2567 46 1 1.9801 -1.5971 -0.4839 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273910_15259592_17850172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:59 Heat of formation + Delta-G solvation = 179.679498 kcal Electronic energy + Delta-G solvation = -26819.900358 eV Core-core repulsion = 23216.720616 eV Total energy + Delta-G solvation = -3603.179742 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.60168 -40.87083 -40.55705 -38.19414 -37.81872 -35.75890 -33.83253 -33.03195 -31.75058 -31.09191 -30.66314 -27.19419 -26.79441 -25.23095 -23.89513 -23.73421 -22.89313 -22.37734 -21.37084 -20.71495 -19.43757 -18.74565 -18.69911 -18.48660 -17.54745 -17.22324 -16.96297 -16.76014 -16.44467 -16.08502 -15.73110 -15.31180 -15.17271 -15.14465 -14.95945 -14.79055 -14.24859 -14.09279 -13.68032 -13.60473 -13.41704 -13.16453 -13.00787 -12.77729 -12.64885 -12.36039 -12.13122 -12.08787 -11.98941 -11.94082 -11.81430 -11.57323 -11.29663 -11.11488 -10.50210 -10.23357 -10.15097 -9.68224 -5.08949 -0.50630 0.04369 0.92597 1.15157 1.20544 1.39604 1.45305 1.78324 1.79746 2.46821 3.06598 3.20791 3.32718 3.42302 3.55167 3.61049 3.65214 3.78867 3.81841 3.94671 3.95414 3.99785 4.11381 4.15898 4.21176 4.23352 4.25965 4.33910 4.40617 4.43914 4.50175 4.55998 4.58631 4.65549 4.75816 4.78899 4.81665 4.87429 4.99363 5.06285 5.12208 5.17808 5.20700 5.25178 5.27834 5.31020 5.32182 5.39369 5.46753 5.54051 5.81504 6.40010 7.35889 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.003285 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.070938 B = 8522.666894 C = 9323.801111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 H 0.439 0.561 3 H 0.452 0.548 4 H 0.445 0.555 5 C 0.011 3.989 6 C -0.107 4.107 7 H 0.116 0.884 8 C -0.112 4.112 9 C -0.110 4.110 10 C 0.001 3.999 11 H 0.070 0.930 12 C -0.020 4.020 13 C -0.044 4.044 14 N -0.239 5.239 15 C 0.107 3.893 16 C -0.078 4.078 17 C -0.081 4.081 18 O -0.546 6.546 19 Si 0.760 3.240 20 C -0.113 4.113 21 C -0.101 4.101 22 C -0.088 4.088 23 C -0.110 4.110 24 N -0.098 5.098 25 N -0.312 5.312 26 C -0.114 4.114 27 C -0.127 4.127 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.233 0.767 35 H 0.082 0.918 36 H 0.388 0.612 37 H -0.296 1.296 38 H -0.282 1.282 39 H 0.142 0.858 40 H 0.162 0.838 41 H 0.175 0.825 42 H 0.169 0.831 43 H 0.087 0.913 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.986 32.227 17.333 39.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.025 5.025 2 H 0.269 0.731 3 H 0.283 0.717 4 H 0.276 0.724 5 C -0.114 4.114 6 C -0.126 4.126 7 H 0.134 0.866 8 C -0.150 4.150 9 C -0.148 4.148 10 C -0.020 4.020 11 H 0.089 0.911 12 C -0.158 4.158 13 C -0.192 4.192 14 N -0.026 5.026 15 C 0.016 3.984 16 C -0.080 4.080 17 C -0.190 4.190 18 O -0.355 6.355 19 Si 0.665 3.335 20 C -0.131 4.131 21 C -0.119 4.119 22 C -0.107 4.107 23 C -0.131 4.131 24 N -0.075 5.075 25 N -0.178 5.178 26 C -0.152 4.152 27 C -0.164 4.164 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.249 0.751 35 H 0.099 0.901 36 H 0.237 0.763 37 H -0.223 1.223 38 H -0.209 1.209 39 H 0.160 0.840 40 H 0.179 0.821 41 H 0.192 0.808 42 H 0.187 0.813 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.270 30.901 15.929 37.212 hybrid contribution 0.963 0.480 -0.738 1.304 sum -12.308 31.381 15.191 36.973 Atomic orbital electron populations 1.42158 1.21743 1.21162 1.17451 0.73086 0.71696 0.72428 1.23440 1.05368 0.93390 0.89201 1.21619 0.95063 0.94691 1.01229 0.86600 1.21477 1.01177 0.93260 0.99110 1.21536 0.92480 0.98879 1.01928 1.19667 0.95979 0.85126 1.01222 0.91145 1.22714 1.04903 1.00160 0.88031 1.24124 1.06715 0.84703 1.03635 1.44802 1.40908 1.11176 1.05691 1.17894 1.04488 0.85023 0.90961 1.19285 1.00747 0.93552 0.94460 1.25039 0.92323 1.08238 0.93353 1.86480 1.47384 1.74006 1.27585 0.94456 0.85727 0.74950 0.78351 1.21285 0.98788 0.97712 0.95347 1.21745 0.96767 0.99863 0.93558 1.21571 0.95718 0.91199 1.02179 1.21311 1.00767 1.02137 0.88838 1.78520 1.19718 1.16111 0.93128 1.75085 1.15370 0.98845 1.28455 1.21607 0.99786 0.96957 0.96845 1.21851 0.94668 0.95408 1.04506 0.84880 0.83973 0.91531 0.89923 0.94854 0.90628 0.75067 0.90068 0.76311 1.22337 1.20875 0.84047 0.82052 0.80787 0.81312 0.89398 0.92962 0.90954 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 49.16 4.48 -186.70 -0.84 48.33 16 2 H 0.44 -35.04 7.26 -89.70 -0.65 -35.69 16 3 H 0.45 -37.14 9.03 -89.69 -0.81 -37.95 16 4 H 0.45 -36.39 8.96 -89.69 -0.80 -37.19 16 5 C 0.01 -0.76 6.01 86.31 0.52 -0.24 16 6 C -0.11 6.03 2.35 -10.79 -0.03 6.00 16 7 H 0.12 -6.87 8.14 -2.39 -0.02 -6.89 16 8 C -0.11 4.83 5.20 30.59 0.16 4.99 16 9 C -0.11 3.51 5.19 30.59 0.16 3.66 16 10 C 0.00 -0.02 2.65 -11.54 -0.03 -0.05 16 11 H 0.07 -1.69 8.14 -2.39 -0.02 -1.71 16 12 C -0.02 0.35 6.16 41.60 0.26 0.60 16 13 C -0.04 0.86 10.10 83.36 0.84 1.71 16 14 N -0.24 2.64 3.56 -187.04 -0.67 1.98 16 15 C 0.11 -1.36 6.67 38.08 0.25 -1.11 16 16 C -0.08 0.79 5.31 -19.75 -0.10 0.68 16 17 C -0.08 0.63 1.74 71.23 0.12 0.75 16 18 O -0.55 2.26 11.82 -148.98 -1.76 0.50 16 19 Si 0.76 -7.89 30.20 68.60 2.07 -5.82 16 20 C -0.11 1.57 8.66 22.25 0.19 1.76 16 21 C -0.10 1.93 10.04 22.29 0.22 2.15 16 22 C -0.09 1.97 10.04 22.25 0.22 2.19 16 23 C -0.11 2.29 9.46 22.38 0.21 2.50 16 24 N -0.10 0.45 8.65 37.02 0.32 0.77 16 25 N -0.31 1.84 12.39 -48.59 -0.60 1.24 16 26 C -0.11 4.38 4.80 30.59 0.15 4.53 16 27 C -0.13 6.51 4.95 30.60 0.15 6.66 16 28 H 0.13 -8.81 8.14 -2.39 -0.02 -8.83 16 29 H 0.14 -9.63 8.14 -2.39 -0.02 -9.65 16 30 H 0.07 -2.68 8.14 -2.39 -0.02 -2.70 16 31 H 0.08 -3.58 8.14 -2.38 -0.02 -3.60 16 32 H 0.03 -0.75 8.14 -2.39 -0.02 -0.77 16 33 H 0.08 -2.52 8.14 -2.39 -0.02 -2.54 16 34 H 0.23 -7.21 6.53 -2.91 -0.02 -7.23 16 35 H 0.08 -0.51 6.07 -2.39 -0.01 -0.52 16 36 H 0.39 -3.60 8.74 -74.06 -0.65 -4.25 16 37 H -0.30 1.27 7.11 99.48 0.71 1.97 16 38 H -0.28 1.65 6.75 99.48 0.67 2.32 16 39 H 0.14 -2.09 4.90 -2.91 -0.01 -2.10 16 40 H 0.16 -3.83 8.06 -2.91 -0.02 -3.85 16 41 H 0.17 -5.03 8.06 -2.91 -0.02 -5.05 16 42 H 0.17 -4.89 6.77 -2.91 -0.02 -4.91 16 43 H 0.09 -3.67 7.37 -2.39 -0.02 -3.69 16 44 H 0.05 -1.70 8.14 -2.39 -0.02 -1.72 16 45 H 0.07 -3.46 8.14 -2.39 -0.02 -3.48 16 46 H 0.11 -6.60 6.75 -2.39 -0.02 -6.62 16 Total: 1.00 -102.81 354.19 -0.05 -102.86 By element: Atomic # 1 Polarization: -184.76 SS G_CDS: -1.88 Total: -186.64 kcal Atomic # 6 Polarization: 33.49 SS G_CDS: 3.30 Total: 36.80 kcal Atomic # 7 Polarization: 54.09 SS G_CDS: -1.78 Total: 52.31 kcal Atomic # 8 Polarization: 2.26 SS G_CDS: -1.76 Total: 0.50 kcal Atomic # 14 Polarization: -7.89 SS G_CDS: 2.07 Total: -5.82 kcal Total: -102.81 -0.05 -102.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_15259592_17850172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 282.535 kcal (2) G-P(sol) polarization free energy of solvation -102.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds