Wall clock time and date at job start Mon Mar 8 2021 06:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37324 * 126.48084 * 2 1 4 4 C 1.50703 * 126.54459 * 359.97438 * 3 2 1 5 5 O 1.42910 * 109.46861 * 121.58692 * 4 3 2 6 6 Si 1.86299 * 109.47148 * 241.58364 * 4 3 2 7 7 H 1.48501 * 109.46975 * 54.21226 * 6 4 3 8 8 H 1.48500 * 109.46686 * 174.20858 * 6 4 3 9 9 H 1.48499 * 109.47342 * 294.20882 * 6 4 3 10 10 C 1.34691 * 106.90952 * 180.25267 * 3 2 1 11 11 Cl 1.73603 * 125.87251 * 179.70370 * 10 3 2 12 12 N 1.34166 * 108.25479 * 359.74100 * 10 3 2 13 13 C 1.31058 * 109.31082 * 0.02562 * 12 10 3 14 14 N 1.39440 * 125.76287 * 180.02562 * 13 12 10 15 15 C 1.36362 * 126.86823 * 0.32902 * 14 13 12 16 16 C 1.34971 * 106.76924 * 180.17124 * 15 14 13 17 17 C 1.50703 * 125.49093 * 179.84386 * 16 15 14 18 18 C 1.53573 * 109.47196 * 34.76374 * 17 16 15 19 19 C 1.55149 * 111.28915 * 190.93620 * 18 17 16 20 20 Si 1.89335 * 101.34632 * 28.58889 * 19 18 17 21 21 C 1.86297 * 111.45654 * 239.14062 * 20 19 18 22 22 C 1.86303 * 111.51326 * 114.15830 * 20 19 18 23 23 C 1.55914 * 109.47092 * 274.71881 * 17 16 15 24 24 N 1.33369 * 109.01759 * 359.57967 * 16 15 14 25 25 N 1.28763 * 109.93931 * 0.26645 * 24 16 15 26 26 H 1.08995 * 109.47287 * 270.21325 * 1 2 3 27 27 H 1.09002 * 109.46533 * 30.21701 * 1 2 3 28 28 H 1.08999 * 109.47332 * 150.21041 * 1 2 3 29 29 H 1.08994 * 109.46978 * 1.58688 * 4 3 2 30 30 H 0.96700 * 113.99916 * 59.99861 * 5 4 3 31 31 H 1.07998 * 126.61671 * 0.02562 * 15 14 13 32 32 H 1.09000 * 109.42767 * 154.74144 * 17 16 15 33 33 H 1.09003 * 109.12266 * 70.45762 * 18 17 16 34 34 H 1.08995 * 109.03968 * 311.37072 * 18 17 16 35 35 H 1.08993 * 111.04822 * 270.57215 * 19 18 17 36 36 H 1.08998 * 111.08046 * 146.62005 * 19 18 17 37 37 H 1.09008 * 109.47092 * 169.79361 * 21 20 19 38 38 H 1.09000 * 109.47471 * 289.79572 * 21 20 19 39 39 H 1.08998 * 109.47081 * 49.80141 * 21 20 19 40 40 H 1.08998 * 109.47080 * 310.17442 * 22 20 19 41 41 H 1.09002 * 109.47136 * 70.17089 * 22 20 19 42 42 H 1.08997 * 109.47148 * 190.17452 * 22 20 19 43 43 H 1.08998 * 111.42736 * 43.11652 * 23 17 16 44 44 H 1.08997 * 111.42634 * 278.17473 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2815 1.1042 0.0000 4 6 1.8415 2.5455 -0.0005 5 8 2.3770 3.2074 1.1472 6 14 2.4602 3.3831 -1.5454 7 1 2.0190 2.6134 -2.7363 8 1 1.9108 4.7610 -1.6151 9 1 3.9437 3.4426 -1.5160 10 6 3.5505 0.6530 -0.0057 11 17 4.9802 1.6377 -0.0154 12 7 3.5197 -0.6883 -0.0033 13 6 2.2733 -1.0932 0.0031 14 7 1.8478 -2.4211 0.0077 15 6 2.6370 -3.5331 0.0128 16 6 1.8085 -4.5986 0.0122 17 6 2.2401 -6.0425 0.0133 18 6 3.5253 -6.1920 0.8406 19 6 4.1581 -7.5957 0.6498 20 14 3.5811 -8.0295 -1.1006 21 6 2.5708 -9.5946 -1.1168 22 6 5.0149 -8.1394 -2.2850 23 6 2.5067 -6.5064 -1.4511 24 7 0.5464 -4.1677 0.0162 25 7 0.5218 -2.8804 0.0137 26 1 -0.3633 0.0038 1.0276 27 1 -0.3632 0.8881 -0.5172 28 1 -0.3634 -0.8918 -0.5105 29 1 0.7529 2.5931 0.0275 30 1 3.3432 3.2040 1.1882 31 1 3.7167 -3.5567 0.0143 32 1 1.4527 -6.6559 0.4512 33 1 3.2902 -6.0466 1.8950 34 1 4.2407 -5.4320 0.5266 35 1 3.7651 -8.3045 1.3784 36 1 5.2456 -7.5459 0.7024 37 1 2.1066 -9.7173 -2.0954 38 1 3.2184 -10.4473 -0.9123 39 1 1.7962 -9.5350 -0.3522 40 1 5.6359 -7.2489 -2.1874 41 1 5.6092 -9.0237 -2.0550 42 1 4.6386 -8.2098 -3.3055 43 1 3.0567 -5.7522 -2.0139 44 1 1.5808 -6.7802 -1.9569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273910_15713346_17831524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:46:31 Heat of formation + Delta-G solvation = 100.576687 kcal Electronic energy + Delta-G solvation = -27019.198545 eV Core-core repulsion = 23160.113340 eV Total energy + Delta-G solvation = -3859.085205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 355.110 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.12142 -43.21408 -38.39876 -37.86144 -37.25944 -35.69238 -35.36735 -31.85832 -31.27716 -29.39301 -29.01825 -28.40752 -28.31753 -27.21773 -25.28881 -25.04199 -23.17451 -22.42351 -21.62584 -20.59704 -19.43482 -18.71325 -18.13592 -17.47521 -16.74679 -16.50855 -16.40711 -16.19840 -15.76061 -15.71605 -15.33707 -14.87808 -14.62239 -14.30331 -14.18536 -13.87113 -13.78979 -13.66925 -13.49202 -13.40964 -13.36597 -13.15745 -13.12756 -12.83924 -12.75142 -12.56127 -12.36323 -12.30541 -12.25301 -12.07333 -11.96487 -11.37861 -11.32666 -11.23768 -10.85171 -10.72968 -10.71550 -10.28110 -10.08480 -9.46048 -0.63573 0.09368 0.37342 0.38905 0.98231 1.19212 1.35248 1.40918 1.44287 1.55297 1.79589 1.88093 2.04962 2.08809 2.64755 2.82363 3.09786 3.13284 3.34180 3.56056 3.62156 3.71406 3.88407 4.08614 4.12441 4.21781 4.28761 4.34745 4.38495 4.56049 4.63978 4.65087 4.72851 4.79100 4.86054 4.89313 4.90232 4.90779 5.02147 5.11838 5.26250 5.37143 5.51619 5.57030 5.59239 5.65566 5.69932 6.01514 6.28336 6.77393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.426 5.426 3 C 0.004 3.996 4 C -0.052 4.052 5 O -0.534 6.534 6 Si 0.969 3.031 7 H -0.260 1.260 8 H -0.239 1.239 9 H -0.231 1.231 10 C 0.051 3.949 11 Cl 0.021 6.979 12 N -0.477 5.477 13 C 0.434 3.566 14 N -0.304 5.304 15 C 0.066 3.934 16 C -0.021 4.021 17 C -0.004 4.004 18 C -0.111 4.111 19 C -0.403 4.403 20 Si 1.046 2.954 21 C -0.459 4.459 22 C -0.456 4.456 23 C -0.404 4.404 24 N -0.232 5.232 25 N -0.083 5.083 26 H 0.099 0.901 27 H 0.129 0.871 28 H 0.101 0.899 29 H 0.149 0.851 30 H 0.384 0.616 31 H 0.224 0.776 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 0.260 -1.319 1.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.112 5.112 3 C -0.115 4.115 4 C -0.162 4.162 5 O -0.340 6.340 6 Si 0.786 3.214 7 H -0.184 1.184 8 H -0.162 1.162 9 H -0.153 1.153 10 C -0.106 4.106 11 Cl 0.049 6.951 12 N -0.202 5.202 13 C 0.084 3.916 14 N -0.089 5.089 15 C -0.084 4.084 16 C -0.158 4.158 17 C -0.025 4.025 18 C -0.149 4.149 19 C -0.489 4.489 20 Si 1.239 2.761 21 C -0.566 4.566 22 C -0.564 4.564 23 C -0.488 4.488 24 N -0.103 5.103 25 N -0.060 5.060 26 H 0.118 0.882 27 H 0.147 0.853 28 H 0.120 0.880 29 H 0.166 0.834 30 H 0.234 0.766 31 H 0.240 0.760 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.330 0.748 -1.939 2.104 hybrid contribution 0.687 -0.002 0.465 0.829 sum 0.356 0.746 -1.475 1.691 Atomic orbital electron populations 1.22797 0.72075 1.07545 1.06376 1.45292 1.09728 1.03223 1.52932 1.21910 0.88835 0.91446 1.09347 1.24893 1.05657 0.84555 1.01098 1.86557 1.27306 1.76272 1.43847 0.85396 0.82604 0.80157 0.73225 1.18449 1.16162 1.15320 1.20347 0.88574 0.88694 1.13012 1.98402 1.35927 1.63543 1.97218 1.69788 1.16258 1.11697 1.22492 1.18053 0.85065 0.79437 1.09083 1.46559 1.08395 1.01941 1.52010 1.23816 1.00717 0.83103 1.00751 1.22042 0.86907 0.98512 1.08322 1.20241 0.98896 0.86167 0.97171 1.21784 0.94894 0.98626 0.99626 1.26563 1.04626 0.99029 1.18672 0.79359 0.65369 0.64989 0.66414 1.26222 1.09519 1.16428 1.04475 1.26180 1.14325 1.04787 1.11076 1.27115 1.10342 1.15902 0.95424 1.74229 1.21861 1.02843 1.11322 1.82084 0.93963 1.04577 1.25381 0.88205 0.85284 0.88031 0.83382 0.76606 0.76006 0.88850 0.91923 0.90703 0.90100 0.89341 0.91351 0.90927 0.91143 0.90891 0.90981 0.91383 0.90239 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.18 10.39 127.77 1.33 1.14 16 2 N -0.43 -1.14 3.19 -533.83 -1.70 -2.85 16 3 C 0.00 0.01 5.44 40.89 0.22 0.23 16 4 C -0.05 0.16 2.86 71.24 0.20 0.36 16 5 O -0.53 0.41 12.88 -148.98 -1.92 -1.51 16 6 Si 0.97 -2.89 26.74 68.60 1.83 -1.05 16 7 H -0.26 0.16 7.11 99.48 0.71 0.86 16 8 H -0.24 0.59 7.11 99.48 0.71 1.29 16 9 H -0.23 0.57 5.95 99.48 0.59 1.16 16 10 C 0.05 0.25 7.23 83.52 0.60 0.85 16 11 Cl 0.02 0.04 24.92 -2.72 -0.07 -0.03 16 12 N -0.48 -3.75 11.14 -188.28 -2.10 -5.84 16 13 C 0.43 2.97 8.63 259.98 2.24 5.22 16 14 N -0.30 -2.12 3.84 -195.46 -0.75 -2.87 16 15 C 0.07 0.24 10.56 83.24 0.88 1.12 16 16 C -0.02 -0.09 6.04 41.57 0.25 0.16 16 17 C 0.00 0.00 2.62 -10.34 -0.03 -0.02 16 18 C -0.11 0.38 5.18 31.52 0.16 0.54 16 19 C -0.40 2.25 5.85 72.72 0.43 2.68 16 20 Si 1.05 -7.27 13.36 68.60 0.92 -6.36 16 21 C -0.46 1.94 8.65 113.37 0.98 2.92 16 22 C -0.46 2.22 8.65 113.37 0.98 3.20 16 23 C -0.40 1.13 5.27 72.99 0.38 1.51 16 24 N -0.23 -2.14 12.33 -49.02 -0.60 -2.74 16 25 N -0.08 -0.72 11.42 37.02 0.42 -0.29 16 26 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.13 -1.32 7.23 -2.39 -0.02 -1.34 16 28 H 0.10 -0.12 6.30 -2.39 -0.02 -0.13 16 29 H 0.15 -1.20 6.76 -2.39 -0.02 -1.21 16 30 H 0.38 -1.46 6.94 -74.06 -0.51 -1.97 16 31 H 0.22 -0.38 7.07 -2.91 -0.02 -0.40 16 32 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.07 -0.39 6.65 -2.39 -0.02 -0.41 16 35 H 0.08 -0.44 8.04 -2.39 -0.02 -0.46 16 36 H 0.09 -0.56 8.04 -2.39 -0.02 -0.58 16 37 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 38 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 39 H 0.07 -0.26 7.96 -2.39 -0.02 -0.27 16 40 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 41 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 42 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 43 H 0.08 -0.20 8.02 -2.39 -0.02 -0.22 16 44 H 0.08 -0.12 8.06 -2.39 -0.02 -0.13 16 Total: 0.00 -15.64 372.66 5.83 -9.81 By element: Atomic # 1 Polarization: -7.33 SS G_CDS: 1.16 Total: -6.17 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 8.64 Total: 19.90 kcal Atomic # 7 Polarization: -9.86 SS G_CDS: -4.73 Total: -14.59 kcal Atomic # 8 Polarization: 0.41 SS G_CDS: -1.92 Total: -1.51 kcal Atomic # 14 Polarization: -10.16 SS G_CDS: 2.75 Total: -7.41 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -0.07 Total: -0.03 kcal Total: -15.64 5.83 -9.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_15713346_17831524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.387 kcal (2) G-P(sol) polarization free energy of solvation -15.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds