Wall clock time and date at job start Mon Mar 8 2021 08:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00905 * 1 3 3 H 1.00896 * 109.46502 * 1 2 4 4 H 1.00896 * 109.47132 * 239.99931 * 1 2 3 5 5 C 1.46898 * 109.47216 * 119.99478 * 1 2 3 6 6 H 1.09000 * 109.47541 * 300.00598 * 5 1 2 7 7 C 1.52999 * 109.47015 * 60.00521 * 5 1 2 8 8 C 1.53001 * 109.47126 * 180.02562 * 7 5 1 9 9 C 1.52999 * 109.47105 * 299.99721 * 8 7 5 10 10 H 1.09000 * 109.47202 * 300.00495 * 9 8 7 11 11 O 1.42897 * 109.47563 * 180.02562 * 9 8 7 12 12 C 1.42895 * 114.00522 * 150.00091 * 11 9 8 13 13 C 1.50695 * 109.47454 * 180.02562 * 12 11 9 14 14 C 1.35368 * 126.72979 * 0.02562 * 13 12 11 15 15 N 1.36122 * 106.05255 * 180.02562 * 14 13 12 16 16 C 1.40244 * 125.94328 * 179.97438 * 15 14 13 17 17 C 1.38799 * 120.06627 * 185.27854 * 16 15 14 18 18 C 1.38139 * 119.93625 * 180.25466 * 17 16 15 19 19 C 1.50706 * 119.97004 * 179.74800 * 18 17 16 20 20 O 1.42895 * 109.46938 * 64.71817 * 19 18 17 21 21 Si 1.86301 * 109.47233 * 184.72163 * 19 18 17 22 22 C 1.38258 * 120.06629 * 359.46645 * 18 17 16 23 23 C 1.38300 * 120.12736 * 0.26010 * 22 18 17 24 24 C 1.38100 * 120.06468 * 0.02562 * 23 22 18 25 25 N 1.28729 * 108.11400 * 0.26537 * 15 14 13 26 26 N 1.28609 * 110.23409 * 359.55466 * 25 15 14 27 27 C 1.53005 * 109.47111 * 59.99954 * 9 8 7 28 28 C 1.52998 * 109.46949 * 300.00291 * 27 9 8 29 29 H 1.08996 * 109.47502 * 60.00083 * 7 5 1 30 30 H 1.08999 * 109.47230 * 300.00100 * 7 5 1 31 31 H 1.09003 * 109.47199 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47494 * 60.00037 * 8 7 5 33 33 H 1.09002 * 109.46794 * 60.00100 * 12 11 9 34 34 H 1.09004 * 109.47066 * 300.00356 * 12 11 9 35 35 H 1.08001 * 126.97808 * 0.02562 * 14 13 12 36 36 H 1.08010 * 120.03306 * 359.97405 * 17 16 15 37 37 H 1.09001 * 109.46953 * 304.71855 * 19 18 17 38 38 H 0.96696 * 114.00485 * 60.00759 * 20 19 18 39 39 H 1.48498 * 109.99815 * 179.97438 * 21 19 18 40 40 H 1.48492 * 109.99988 * 301.31687 * 21 19 18 41 41 H 1.07996 * 119.93855 * 180.23491 * 22 18 17 42 42 H 1.07999 * 119.96800 * 180.02562 * 23 22 18 43 43 H 1.07997 * 120.02963 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.46786 * 59.99663 * 27 9 8 45 45 H 1.08999 * 109.47441 * 179.97438 * 27 9 8 46 46 H 1.09000 * 109.47372 * 299.99464 * 28 27 9 47 47 H 1.09010 * 109.47041 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3362 0.9513 0.0000 4 1 -0.3363 -0.4756 0.8238 5 6 -0.4897 -0.6924 -1.1995 6 1 -0.1263 -0.1786 -2.0895 7 6 0.0202 -2.1349 -1.1995 8 6 -0.4893 -2.8559 -2.4491 9 6 -2.0193 -2.8558 -2.4498 10 1 -2.3830 -3.3697 -1.5600 11 8 -2.4952 -3.5297 -3.6166 12 6 -3.7549 -4.1804 -3.4388 13 6 -4.1578 -4.8550 -4.7247 14 6 -3.4620 -4.8655 -5.8859 15 7 -4.2069 -5.5910 -6.7644 16 6 -3.8715 -5.8644 -8.0984 17 6 -4.7731 -6.5263 -8.9205 18 6 -4.4379 -6.7989 -10.2326 19 6 -5.4140 -7.5225 -11.1241 20 8 -6.5756 -6.7125 -11.3149 21 14 -4.6156 -7.8614 -12.7729 22 6 -3.2102 -6.4034 -10.7304 23 6 -2.3121 -5.7387 -9.9153 24 6 -2.6393 -5.4687 -8.6011 25 7 -5.2755 -5.9774 -6.1595 26 7 -5.2733 -5.5605 -4.9429 27 6 -2.5292 -1.4132 -2.4497 28 6 -2.0197 -0.6923 -1.2001 29 1 -0.3432 -2.6488 -0.3096 30 1 1.1102 -2.1350 -1.1995 31 1 -0.1264 -3.8837 -2.4490 32 1 -0.1255 -2.3419 -3.3389 33 1 -4.5090 -3.4431 -3.1632 34 1 -3.6702 -4.9264 -2.6486 35 1 -2.5093 -4.3940 -6.0767 36 1 -5.7340 -6.8319 -8.5333 37 1 -5.7009 -8.4655 -10.6588 38 1 -6.3949 -5.8561 -11.7258 39 1 -5.5677 -8.5753 -13.6611 40 1 -4.1910 -6.5858 -13.4034 41 1 -2.9519 -6.6142 -11.7576 42 1 -1.3540 -5.4306 -10.3070 43 1 -1.9377 -4.9492 -7.9653 44 1 -2.1654 -0.8993 -3.3394 45 1 -3.6192 -1.4131 -2.4506 46 1 -2.3834 -1.2062 -0.3104 47 1 -2.3826 0.3356 -1.2003 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273910_16485582_12385520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:47:00 Heat of formation + Delta-G solvation = 135.276393 kcal Electronic energy + Delta-G solvation = -27802.415548 eV Core-core repulsion = 23878.628151 eV Total energy + Delta-G solvation = -3923.787397 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.68854 -41.14183 -40.85319 -39.13414 -38.05288 -36.16670 -35.64769 -33.24476 -32.44808 -31.97504 -31.36099 -29.57936 -27.79234 -26.88972 -25.64572 -24.09813 -23.69783 -23.16656 -22.14037 -22.08252 -21.31150 -19.55769 -18.64125 -18.33211 -18.17294 -17.89037 -17.81625 -17.51257 -17.36283 -16.65416 -16.42499 -16.33290 -16.30788 -15.90904 -15.45702 -15.04933 -14.95008 -14.76934 -14.31907 -14.22660 -14.08038 -13.74118 -13.44331 -13.38201 -13.27912 -13.14082 -12.93917 -12.57279 -12.32910 -12.23969 -12.17404 -12.14609 -12.08029 -11.75521 -11.74138 -11.40106 -10.77712 -10.72715 -10.30549 -10.16151 -9.78683 -4.97019 -0.58950 0.02572 0.79421 1.04254 1.19526 1.25311 1.53716 1.59045 1.95135 2.24104 2.43528 3.12337 3.14325 3.27134 3.28332 3.42329 3.60449 3.65409 3.66047 3.81665 3.84584 3.89309 3.95679 3.99805 4.03404 4.08559 4.16270 4.19712 4.24426 4.29671 4.34253 4.41435 4.45968 4.51284 4.53724 4.63772 4.68456 4.75924 4.78676 4.80438 4.91296 5.02956 5.08890 5.09478 5.11185 5.12893 5.18857 5.28936 5.32885 5.39882 5.72714 6.14274 6.39033 7.16821 Molecular weight = 332.18amu Principal moments of inertia in cm(-1) A = 0.026465 B = 0.002109 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.737028 B =13272.972937 C =13908.293784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.443 0.557 5 C 0.050 3.950 6 H 0.150 0.850 7 C -0.136 4.136 8 C -0.118 4.118 9 C 0.076 3.924 10 H 0.074 0.926 11 O -0.391 6.391 12 C 0.165 3.835 13 C -0.035 4.035 14 C -0.012 4.012 15 N -0.242 5.242 16 C 0.093 3.907 17 C -0.095 4.095 18 C -0.101 4.101 19 C -0.094 4.094 20 O -0.551 6.551 21 Si 0.783 3.217 22 C -0.105 4.105 23 C -0.081 4.081 24 C -0.102 4.102 25 N -0.118 5.118 26 N -0.288 5.288 27 C -0.146 4.146 28 C -0.138 4.138 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.233 0.767 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.387 0.613 39 H -0.312 1.312 40 H -0.266 1.266 41 H 0.158 0.842 42 H 0.181 0.819 43 H 0.168 0.832 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.329 24.738 28.478 45.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.282 0.718 3 H 0.281 0.719 4 H 0.273 0.727 5 C -0.056 4.056 6 H 0.168 0.832 7 C -0.174 4.174 8 C -0.157 4.157 9 C 0.019 3.981 10 H 0.092 0.908 11 O -0.310 6.310 12 C 0.086 3.914 13 C -0.173 4.173 14 C -0.160 4.160 15 N -0.029 5.029 16 C 0.003 3.997 17 C -0.116 4.116 18 C -0.102 4.102 19 C -0.202 4.202 20 O -0.359 6.359 21 Si 0.687 3.313 22 C -0.123 4.123 23 C -0.100 4.100 24 C -0.122 4.122 25 N -0.095 5.095 26 N -0.156 5.156 27 C -0.185 4.185 28 C -0.176 4.176 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.250 0.750 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.237 0.763 39 H -0.241 1.241 40 H -0.192 1.192 41 H 0.175 0.825 42 H 0.198 0.802 43 H 0.186 0.814 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.116 0.884 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 23.682 23.468 27.463 43.195 hybrid contribution -0.878 1.016 0.228 1.362 sum 22.804 24.484 27.691 43.431 Atomic orbital electron populations 1.42239 1.22118 1.20910 1.16695 0.71772 0.71876 0.72668 1.22861 0.96564 0.96070 0.90069 0.83192 1.21978 1.03719 0.92557 0.99102 1.21516 0.92012 1.02355 0.99773 1.22545 0.95620 0.92441 0.87538 0.90826 1.87802 1.35190 1.70226 1.37793 1.20213 0.86591 0.95274 0.89287 1.22233 0.93237 1.03483 0.98361 1.24056 1.02221 1.00982 0.88773 1.44882 1.14210 1.33505 1.10293 1.18006 0.97492 1.04701 0.79491 1.20768 0.99008 0.98182 0.93592 1.20220 0.96507 0.99905 0.93539 1.25444 0.89221 0.96272 1.09239 1.86618 1.32301 1.33578 1.83451 0.93995 0.83705 0.81784 0.71803 1.21611 0.92430 0.96616 1.01604 1.21482 1.01008 0.95963 0.91505 1.21346 0.93194 0.99986 0.97674 1.78434 1.07512 1.21810 1.01790 1.75000 1.20749 1.12785 1.07024 1.21982 1.01459 0.95280 0.99770 1.21960 0.92472 1.03939 0.99182 0.88383 0.86949 0.91509 0.90310 0.90270 0.90217 0.75033 0.86390 0.86368 0.76318 1.24060 1.19212 0.82455 0.80165 0.81426 0.90608 0.92263 0.88428 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.16 4.15 -168.68 -0.70 47.46 16 2 H 0.45 -36.74 8.96 -89.69 -0.80 -37.54 16 3 H 0.45 -36.49 8.96 -89.70 -0.80 -37.29 16 4 H 0.44 -35.49 8.90 -89.70 -0.80 -36.29 16 5 C 0.05 -3.27 3.02 44.92 0.14 -3.14 16 6 H 0.15 -9.80 8.14 -2.39 -0.02 -9.82 16 7 C -0.14 7.75 5.43 30.59 0.17 7.92 16 8 C -0.12 5.17 5.57 30.59 0.17 5.34 16 9 C 0.08 -2.91 2.61 30.60 0.08 -2.83 16 10 H 0.07 -2.89 7.79 -2.39 -0.02 -2.91 16 11 O -0.39 10.99 9.37 -148.98 -1.40 9.59 16 12 C 0.16 -3.72 6.37 71.23 0.45 -3.27 16 13 C -0.04 0.45 7.22 41.60 0.30 0.75 16 14 C -0.01 0.19 10.25 83.36 0.85 1.04 16 15 N -0.24 2.13 3.56 -187.04 -0.67 1.46 16 16 C 0.09 -1.11 6.67 38.07 0.25 -0.85 16 17 C -0.10 0.86 9.25 22.38 0.21 1.06 16 18 C -0.10 1.34 5.35 -19.88 -0.11 1.24 16 19 C -0.09 1.11 2.80 71.24 0.20 1.31 16 20 O -0.55 4.03 12.83 -148.98 -1.91 2.12 16 21 Si 0.78 -11.46 29.88 68.60 2.05 -9.41 16 22 C -0.10 1.98 8.67 22.29 0.19 2.17 16 23 C -0.08 1.81 10.04 22.25 0.22 2.04 16 24 C -0.10 2.03 9.46 22.38 0.21 2.25 16 25 N -0.12 0.19 12.42 37.02 0.46 0.65 16 26 N -0.29 0.99 12.39 -48.59 -0.60 0.39 16 27 C -0.15 6.23 5.54 30.60 0.17 6.40 16 28 C -0.14 7.72 5.43 30.59 0.17 7.89 16 29 H 0.10 -5.66 8.14 -2.39 -0.02 -5.68 16 30 H 0.11 -6.67 8.14 -2.39 -0.02 -6.69 16 31 H 0.07 -2.54 8.14 -2.39 -0.02 -2.56 16 32 H 0.08 -3.33 8.14 -2.39 -0.02 -3.35 16 33 H 0.08 -1.91 7.87 -2.39 -0.02 -1.93 16 34 H 0.08 -1.90 8.08 -2.38 -0.02 -1.92 16 35 H 0.23 -5.70 7.01 -2.91 -0.02 -5.72 16 36 H 0.12 -0.47 7.70 -2.91 -0.02 -0.49 16 37 H 0.12 -1.38 7.96 -2.39 -0.02 -1.40 16 38 H 0.39 -5.40 8.70 -74.06 -0.64 -6.04 16 39 H -0.31 1.45 7.11 99.48 0.71 2.16 16 40 H -0.27 3.52 7.01 99.48 0.70 4.21 16 41 H 0.16 -3.60 4.83 -2.91 -0.01 -3.61 16 42 H 0.18 -5.28 8.06 -2.91 -0.02 -5.30 16 43 H 0.17 -4.52 6.79 -2.91 -0.02 -4.54 16 44 H 0.08 -3.07 8.14 -2.39 -0.02 -3.09 16 45 H 0.06 -2.15 7.87 -2.39 -0.02 -2.17 16 46 H 0.10 -5.55 8.14 -2.39 -0.02 -5.57 16 47 H 0.11 -6.09 8.14 -2.38 -0.02 -6.11 16 Total: 1.00 -101.00 377.04 -1.08 -102.08 By element: Atomic # 1 Polarization: -181.66 SS G_CDS: -2.00 Total: -183.66 kcal Atomic # 6 Polarization: 25.64 SS G_CDS: 3.68 Total: 29.32 kcal Atomic # 7 Polarization: 51.47 SS G_CDS: -1.51 Total: 49.96 kcal Atomic # 8 Polarization: 15.02 SS G_CDS: -3.31 Total: 11.71 kcal Atomic # 14 Polarization: -11.46 SS G_CDS: 2.05 Total: -9.41 kcal Total: -101.00 -1.08 -102.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_16485582_12385520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.357 kcal (2) G-P(sol) polarization free energy of solvation -100.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds