Wall clock time and date at job start Mon Mar 8 2021 09:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47463 * 2 1 4 4 C 1.53000 * 109.47188 * 239.99852 * 2 1 3 5 5 Si 1.86308 * 109.47129 * 119.99714 * 2 1 3 6 6 C 1.86298 * 109.47286 * 300.00064 * 5 2 1 7 7 C 1.86303 * 109.47007 * 179.97438 * 5 2 1 8 8 O 1.63096 * 109.46853 * 60.00178 * 5 2 1 9 9 C 1.42905 * 114.00012 * 180.02562 * 8 5 2 10 10 C 1.53000 * 109.47264 * 180.02562 * 9 8 5 11 11 C 1.50697 * 109.47255 * 179.97438 * 10 9 8 12 12 C 1.35371 * 126.73044 * 125.01962 * 11 10 9 13 13 N 1.36119 * 106.05081 * 180.02562 * 12 11 10 14 14 C 1.40244 * 125.94467 * 180.02562 * 13 12 11 15 15 C 1.38806 * 120.06339 * 5.02125 * 14 13 12 16 16 C 1.38142 * 119.93029 * 180.02562 * 15 14 13 17 17 C 1.38251 * 120.06977 * 359.97438 * 16 15 14 18 18 C 1.38298 * 120.12738 * 0.02562 * 17 16 15 19 19 C 1.50705 * 119.96618 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.47358 * 119.99682 * 19 18 17 21 21 Si 1.86306 * 109.47051 * 359.97438 * 19 18 17 22 22 H 1.48496 * 109.46892 * 60.00080 * 21 19 18 23 23 H 1.48498 * 109.46960 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47069 * 300.00189 * 21 19 18 25 25 C 1.38102 * 120.06969 * 359.71704 * 18 17 16 26 26 N 1.28737 * 108.11172 * 0.02562 * 13 12 11 27 27 N 1.28604 * 110.23417 * 359.97438 * 26 13 12 28 28 H 1.09000 * 109.47175 * 299.99942 * 1 2 3 29 29 H 1.08998 * 109.47212 * 59.99829 * 1 2 3 30 30 H 1.08999 * 109.46904 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47186 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46615 * 299.99956 * 3 2 1 33 33 H 1.09000 * 109.46878 * 59.99876 * 3 2 1 34 34 H 1.08999 * 109.47170 * 299.99803 * 4 2 1 35 35 H 1.08998 * 109.47258 * 59.99819 * 4 2 1 36 36 H 1.09007 * 109.47254 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.46871 * 179.97438 * 6 5 2 38 38 H 1.08999 * 109.47183 * 300.00162 * 6 5 2 39 39 H 1.08997 * 109.46708 * 59.99862 * 6 5 2 40 40 H 1.09009 * 109.47123 * 300.00089 * 7 5 2 41 41 H 1.08999 * 109.46944 * 60.00155 * 7 5 2 42 42 H 1.08998 * 109.47091 * 180.02562 * 7 5 2 43 43 H 1.08991 * 109.47100 * 59.99600 * 9 8 5 44 44 H 1.09001 * 109.46494 * 299.99348 * 9 8 5 45 45 H 1.09004 * 109.47469 * 59.99369 * 10 9 8 46 46 H 1.09001 * 109.46836 * 299.99808 * 10 9 8 47 47 H 1.08001 * 126.97515 * 359.97438 * 12 11 10 48 48 H 1.07995 * 120.03346 * 359.97438 * 15 14 13 49 49 H 1.08002 * 119.96468 * 179.97438 * 16 15 14 50 50 H 1.08002 * 119.94092 * 180.02562 * 17 16 15 51 51 H 1.09001 * 109.47040 * 239.99573 * 19 18 17 52 52 H 0.96702 * 113.99962 * 299.99369 * 20 19 18 53 53 H 1.07993 * 120.03776 * 180.29920 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8788 1.5208 8 8 1.6074 -2.4159 1.5212 9 6 2.0285 -3.1813 2.6521 10 6 1.4638 -4.5994 2.5472 11 6 1.9084 -5.4067 3.7394 12 6 1.1129 -6.0784 4.6046 13 7 1.9469 -6.6547 5.5129 14 6 1.5569 -7.4516 6.5990 15 6 0.2232 -7.7997 6.7626 16 6 -0.1580 -8.5843 7.8338 17 6 0.7874 -9.0233 8.7420 18 6 2.1169 -8.6781 8.5815 19 6 3.1445 -9.1591 9.5734 20 8 4.1234 -9.9520 8.8987 21 14 2.3091 -10.1860 10.8844 22 1 1.6477 -11.3548 10.2508 23 1 3.3216 -10.6595 11.8621 24 1 1.2922 -9.3617 11.5855 25 6 2.5049 -7.8984 7.5098 26 7 3.1560 -6.3410 5.2015 27 7 3.1666 -5.5994 4.1509 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 1.8930 -0.5140 3.9323 38 1 1.8933 1.0277 3.0423 39 1 0.4401 0.0000 3.0423 40 1 4.3770 -1.3930 0.6308 41 1 4.3777 0.1487 1.5206 42 1 4.3774 -1.3930 2.4106 43 1 1.6637 -2.7112 3.5653 44 1 3.1174 -3.2252 2.6759 45 1 1.8289 -5.0693 1.6339 46 1 0.3749 -4.5559 2.5230 47 1 0.0351 -6.1431 4.5797 48 1 -0.5158 -7.4567 6.0537 49 1 -1.1957 -8.8551 7.9618 50 1 0.4871 -9.6370 9.5785 51 1 3.6298 -8.3012 10.0388 52 1 3.7617 -10.7345 8.4605 53 1 3.5440 -7.6332 7.3823 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273910_16485582_13581112.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:25:53 Heat of formation + Delta-G solvation = -7.323821 kcal Electronic energy + Delta-G solvation = -29730.510436 eV Core-core repulsion = 25727.640498 eV Total energy + Delta-G solvation = -4002.869938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.50610 -40.93423 -38.29451 -37.90599 -36.81028 -35.89616 -33.96850 -32.73325 -31.42857 -30.00695 -29.31671 -29.04450 -27.83105 -27.34609 -27.12163 -25.60315 -24.65497 -23.51099 -22.12992 -21.60789 -20.38843 -19.45526 -18.26440 -17.76350 -17.66037 -17.50895 -16.72271 -16.51245 -16.33276 -16.01649 -15.92770 -15.62724 -15.33720 -15.16714 -14.84889 -14.80362 -14.74522 -14.40519 -14.14491 -13.91584 -13.76624 -13.41453 -13.35512 -13.31250 -13.20213 -13.09844 -12.93764 -12.89861 -12.85660 -12.59542 -12.37811 -12.35961 -12.16034 -12.02734 -12.01432 -11.78816 -11.70800 -11.66396 -11.39390 -11.27995 -10.68397 -10.32560 -10.29073 -10.21759 -10.03601 -9.77698 -0.60825 -0.07834 0.81583 0.94958 1.15182 1.29951 1.35795 1.36833 1.58380 1.78664 1.80069 2.10374 2.34449 2.49862 3.11216 3.19660 3.37341 3.47200 3.62082 3.72643 3.82048 3.88726 3.99020 4.12875 4.14606 4.14918 4.15932 4.29560 4.42326 4.44626 4.47786 4.49581 4.59892 4.67761 4.72345 4.76884 4.80948 4.82350 4.84057 4.88257 4.92980 4.97000 5.02407 5.04266 5.11007 5.12714 5.13094 5.17079 5.22094 5.33302 5.36206 5.44933 5.45880 5.54626 5.58698 5.65993 5.71743 6.40202 7.40220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.290 2.710 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.626 6.626 9 C 0.091 3.909 10 C -0.034 4.034 11 C -0.013 4.013 12 C -0.043 4.043 13 N -0.244 5.244 14 C 0.122 3.878 15 C -0.113 4.113 16 C -0.090 4.090 17 C -0.117 4.117 18 C -0.100 4.100 19 C -0.084 4.084 20 O -0.534 6.534 21 Si 0.952 3.048 22 H -0.249 1.249 23 H -0.250 1.250 24 H -0.249 1.249 25 C -0.072 4.072 26 N -0.071 5.071 27 N -0.253 5.253 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.196 0.804 48 H 0.139 0.861 49 H 0.143 0.857 50 H 0.131 0.869 51 H 0.123 0.877 52 H 0.378 0.622 53 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 -1.933 2.421 6.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.421 2.579 6 C -0.613 4.613 7 C -0.614 4.614 8 O -0.585 6.585 9 C 0.015 3.985 10 C -0.074 4.074 11 C -0.149 4.149 12 C -0.191 4.191 13 N -0.031 5.031 14 C 0.031 3.969 15 C -0.134 4.134 16 C -0.108 4.108 17 C -0.135 4.135 18 C -0.101 4.101 19 C -0.194 4.194 20 O -0.339 6.339 21 Si 0.774 3.226 22 H -0.173 1.173 23 H -0.174 1.174 24 H -0.172 1.172 25 C -0.092 4.092 26 N -0.049 5.049 27 N -0.121 5.121 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.213 0.787 48 H 0.156 0.844 49 H 0.161 0.839 50 H 0.149 0.851 51 H 0.141 0.859 52 H 0.225 0.775 53 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.198 -2.266 3.463 5.895 hybrid contribution -1.147 0.462 -0.653 1.398 sum -5.345 -1.804 2.810 6.302 Atomic orbital electron populations 1.21509 0.93854 1.01987 1.01722 1.25785 1.00646 1.02623 1.12792 1.21555 1.00825 0.94928 1.02084 1.21511 1.00672 1.00249 0.96681 0.76667 0.63093 0.53384 0.64783 1.27042 1.06896 1.09473 1.17918 1.27041 1.25064 1.04616 1.04668 1.85305 1.79429 1.46070 1.47724 1.21907 0.98937 0.91091 0.86556 1.19890 1.01793 0.92417 0.93271 1.21892 0.89612 1.03161 1.00222 1.23563 0.99607 1.02679 0.93229 1.44652 1.06014 1.33032 1.19382 1.17692 0.94457 0.96709 0.88009 1.20984 0.93192 0.99428 0.99753 1.20995 1.00382 0.96345 0.93087 1.21283 0.92694 0.99847 0.99674 1.20301 0.94754 0.98228 0.96791 1.25079 0.93766 1.00896 0.99680 1.86563 1.34080 1.40677 1.72588 0.85648 0.79338 0.79512 0.78127 1.17272 1.17363 1.17224 1.20839 1.00168 0.95982 0.92232 1.78429 1.01474 1.13566 1.11458 1.75103 1.20350 1.11654 1.04978 0.92756 0.92847 0.92129 0.92491 0.92534 0.92556 0.92106 0.92852 0.92666 0.91536 0.90756 0.90937 0.90819 0.90841 0.91325 0.92730 0.91659 0.88639 0.88837 0.78740 0.84367 0.83909 0.85123 0.85899 0.77495 0.83302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.02 7.85 37.16 0.29 0.28 16 2 C -0.37 -0.01 0.53 -90.62 -0.05 -0.06 16 3 C -0.14 0.03 7.85 37.16 0.29 0.32 16 4 C -0.13 -0.05 7.85 37.16 0.29 0.24 16 5 Si 1.29 -0.49 8.45 -169.99 -1.44 -1.93 16 6 C -0.51 0.02 8.50 101.05 0.86 0.87 16 7 C -0.51 -0.25 8.50 101.05 0.86 0.61 16 8 O -0.63 -0.38 8.56 -35.23 -0.30 -0.68 16 9 C 0.09 0.04 5.10 37.16 0.19 0.23 16 10 C -0.03 0.01 6.16 -27.88 -0.17 -0.16 16 11 C -0.01 -0.02 6.50 -82.77 -0.54 -0.56 16 12 C -0.04 0.00 10.83 -16.67 -0.18 -0.18 16 13 N -0.24 -0.50 3.56 -10.47 -0.04 -0.54 16 14 C 0.12 0.06 6.67 -83.57 -0.56 -0.50 16 15 C -0.11 0.23 9.46 -39.41 -0.37 -0.14 16 16 C -0.09 0.26 10.04 -39.61 -0.40 -0.14 16 17 C -0.12 0.26 8.67 -39.55 -0.34 -0.09 16 18 C -0.10 0.11 5.39 -104.65 -0.56 -0.45 16 19 C -0.08 0.14 2.82 36.01 0.10 0.24 16 20 O -0.53 0.28 12.76 -35.23 -0.45 -0.17 16 21 Si 0.95 -2.06 25.07 -169.99 -4.26 -6.32 16 22 H -0.25 0.55 7.11 56.52 0.40 0.95 16 23 H -0.25 0.09 7.11 56.52 0.40 0.49 16 24 H -0.25 0.47 7.11 56.52 0.40 0.87 16 25 C -0.07 -0.04 9.18 -39.41 -0.36 -0.40 16 26 N -0.07 -0.34 12.43 60.35 0.75 0.41 16 27 N -0.25 -1.19 12.39 33.29 0.41 -0.78 16 28 H 0.05 -0.02 7.79 -51.93 -0.40 -0.43 16 29 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.06 0.01 7.96 -51.93 -0.41 -0.41 16 31 H 0.06 -0.04 7.79 -51.93 -0.40 -0.45 16 32 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.06 -0.05 7.79 -51.93 -0.40 -0.45 16 34 H 0.06 0.03 7.97 -51.93 -0.41 -0.39 16 35 H 0.05 0.03 8.14 -51.93 -0.42 -0.39 16 36 H 0.05 0.00 7.79 -51.92 -0.40 -0.41 16 37 H 0.07 0.01 7.48 -51.93 -0.39 -0.38 16 38 H 0.07 -0.02 7.79 -51.93 -0.40 -0.43 16 39 H 0.07 -0.01 7.79 -51.93 -0.40 -0.41 16 40 H 0.07 0.05 7.79 -51.92 -0.40 -0.35 16 41 H 0.07 0.00 7.79 -51.93 -0.40 -0.40 16 42 H 0.07 0.05 7.48 -51.93 -0.39 -0.34 16 43 H 0.05 -0.02 7.21 -51.93 -0.37 -0.40 16 44 H 0.07 0.05 7.21 -51.93 -0.37 -0.32 16 45 H 0.10 -0.02 8.14 -51.93 -0.42 -0.45 16 46 H 0.09 -0.22 8.12 -51.93 -0.42 -0.64 16 47 H 0.20 -0.80 7.13 -52.49 -0.37 -1.17 16 48 H 0.14 -0.61 6.79 -52.49 -0.36 -0.97 16 49 H 0.14 -0.76 8.06 -52.49 -0.42 -1.19 16 50 H 0.13 -0.47 4.87 -52.49 -0.26 -0.73 16 51 H 0.12 -0.28 7.96 -51.93 -0.41 -0.69 16 52 H 0.38 -1.44 8.70 45.56 0.40 -1.04 16 53 H 0.15 0.23 7.70 -52.49 -0.40 -0.17 16 LS Contribution 425.97 15.07 6.42 6.42 Total: 0.00 -7.11 425.97 -7.89 -14.99 By element: Atomic # 1 Polarization: -3.18 SS G_CDS: -8.33 Total: -11.51 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.65 Total: 0.11 kcal Atomic # 7 Polarization: -2.03 SS G_CDS: 1.13 Total: -0.91 kcal Atomic # 8 Polarization: -0.11 SS G_CDS: -0.75 Total: -0.86 kcal Atomic # 14 Polarization: -2.55 SS G_CDS: -5.70 Total: -8.25 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -7.11 -7.89 -14.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_16485582_13581112.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.668 kcal (2) G-P(sol) polarization free energy of solvation -7.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds