Wall clock time and date at job start Mon Mar 8 2021 09:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47463 * 2 1 4 4 C 1.53000 * 109.47188 * 239.99852 * 2 1 3 5 5 Si 1.86308 * 109.47129 * 119.99714 * 2 1 3 6 6 C 1.86298 * 109.47286 * 300.00064 * 5 2 1 7 7 C 1.86303 * 109.47007 * 179.97438 * 5 2 1 8 8 O 1.63096 * 109.46853 * 60.00178 * 5 2 1 9 9 C 1.42905 * 114.00012 * 180.02562 * 8 5 2 10 10 C 1.53000 * 109.47264 * 180.02562 * 9 8 5 11 11 C 1.50697 * 109.47255 * 179.97438 * 10 9 8 12 12 C 1.35371 * 126.73044 * 125.01962 * 11 10 9 13 13 N 1.36119 * 106.05081 * 180.02562 * 12 11 10 14 14 C 1.40244 * 125.94467 * 180.02562 * 13 12 11 15 15 C 1.38806 * 120.06339 * 5.02125 * 14 13 12 16 16 C 1.38142 * 119.93029 * 180.02562 * 15 14 13 17 17 C 1.38251 * 120.06977 * 359.97438 * 16 15 14 18 18 C 1.38298 * 120.12738 * 0.02562 * 17 16 15 19 19 C 1.50705 * 119.96618 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.47358 * 119.99682 * 19 18 17 21 21 Si 1.86306 * 109.47051 * 359.97438 * 19 18 17 22 22 H 1.48496 * 109.46892 * 60.00080 * 21 19 18 23 23 H 1.48498 * 109.46960 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47069 * 300.00189 * 21 19 18 25 25 C 1.38102 * 120.06969 * 359.71704 * 18 17 16 26 26 N 1.28737 * 108.11172 * 0.02562 * 13 12 11 27 27 N 1.28604 * 110.23417 * 359.97438 * 26 13 12 28 28 H 1.09000 * 109.47175 * 299.99942 * 1 2 3 29 29 H 1.08998 * 109.47212 * 59.99829 * 1 2 3 30 30 H 1.08999 * 109.46904 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47186 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46615 * 299.99956 * 3 2 1 33 33 H 1.09000 * 109.46878 * 59.99876 * 3 2 1 34 34 H 1.08999 * 109.47170 * 299.99803 * 4 2 1 35 35 H 1.08998 * 109.47258 * 59.99819 * 4 2 1 36 36 H 1.09007 * 109.47254 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.46871 * 179.97438 * 6 5 2 38 38 H 1.08999 * 109.47183 * 300.00162 * 6 5 2 39 39 H 1.08997 * 109.46708 * 59.99862 * 6 5 2 40 40 H 1.09009 * 109.47123 * 300.00089 * 7 5 2 41 41 H 1.08999 * 109.46944 * 60.00155 * 7 5 2 42 42 H 1.08998 * 109.47091 * 180.02562 * 7 5 2 43 43 H 1.08991 * 109.47100 * 59.99600 * 9 8 5 44 44 H 1.09001 * 109.46494 * 299.99348 * 9 8 5 45 45 H 1.09004 * 109.47469 * 59.99369 * 10 9 8 46 46 H 1.09001 * 109.46836 * 299.99808 * 10 9 8 47 47 H 1.08001 * 126.97515 * 359.97438 * 12 11 10 48 48 H 1.07995 * 120.03346 * 359.97438 * 15 14 13 49 49 H 1.08002 * 119.96468 * 179.97438 * 16 15 14 50 50 H 1.08002 * 119.94092 * 180.02562 * 17 16 15 51 51 H 1.09001 * 109.47040 * 239.99573 * 19 18 17 52 52 H 0.96702 * 113.99962 * 299.99369 * 20 19 18 53 53 H 1.07993 * 120.03776 * 180.29920 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8788 1.5208 8 8 1.6074 -2.4159 1.5212 9 6 2.0285 -3.1813 2.6521 10 6 1.4638 -4.5994 2.5472 11 6 1.9084 -5.4067 3.7394 12 6 1.1129 -6.0784 4.6046 13 7 1.9469 -6.6547 5.5129 14 6 1.5569 -7.4516 6.5990 15 6 0.2232 -7.7997 6.7626 16 6 -0.1580 -8.5843 7.8338 17 6 0.7874 -9.0233 8.7420 18 6 2.1169 -8.6781 8.5815 19 6 3.1445 -9.1591 9.5734 20 8 4.1234 -9.9520 8.8987 21 14 2.3091 -10.1860 10.8844 22 1 1.6477 -11.3548 10.2508 23 1 3.3216 -10.6595 11.8621 24 1 1.2922 -9.3617 11.5855 25 6 2.5049 -7.8984 7.5098 26 7 3.1560 -6.3410 5.2015 27 7 3.1666 -5.5994 4.1509 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 1.8930 -0.5140 3.9323 38 1 1.8933 1.0277 3.0423 39 1 0.4401 0.0000 3.0423 40 1 4.3770 -1.3930 0.6308 41 1 4.3777 0.1487 1.5206 42 1 4.3774 -1.3930 2.4106 43 1 1.6637 -2.7112 3.5653 44 1 3.1174 -3.2252 2.6759 45 1 1.8289 -5.0693 1.6339 46 1 0.3749 -4.5559 2.5230 47 1 0.0351 -6.1431 4.5797 48 1 -0.5158 -7.4567 6.0537 49 1 -1.1957 -8.8551 7.9618 50 1 0.4871 -9.6370 9.5785 51 1 3.6298 -8.3012 10.0388 52 1 3.7617 -10.7345 8.4605 53 1 3.5440 -7.6332 7.3823 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273910_16485582_13581112.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:25:52 Heat of formation + Delta-G solvation = -1.303849 kcal Electronic energy + Delta-G solvation = -29730.249391 eV Core-core repulsion = 25727.640498 eV Total energy + Delta-G solvation = -4002.608892 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -44.58212 -40.80165 -38.29564 -37.82789 -36.80350 -35.89044 -33.98654 -32.59107 -31.38156 -30.01127 -29.32413 -29.05592 -27.81650 -27.35747 -26.99993 -25.60416 -24.65225 -23.44167 -22.06777 -21.60640 -20.38580 -19.38067 -18.19131 -17.78959 -17.54328 -17.51531 -16.64274 -16.44966 -16.23946 -16.00415 -15.86397 -15.55482 -15.32761 -15.01219 -14.83599 -14.75164 -14.61512 -14.39405 -14.09502 -13.91175 -13.74773 -13.40567 -13.37655 -13.23283 -13.16353 -13.02616 -12.91835 -12.91714 -12.84409 -12.62938 -12.36256 -12.18789 -12.09665 -12.04208 -12.01916 -11.70592 -11.67862 -11.64399 -11.40128 -11.28471 -10.55303 -10.36454 -10.30941 -10.06943 -10.03968 -9.72573 -0.53272 0.07485 0.85776 1.06982 1.21509 1.28301 1.47491 1.51443 1.56612 1.82100 1.93092 2.11274 2.48402 2.49895 3.17392 3.31104 3.56480 3.61467 3.75408 3.83538 3.99510 4.01046 4.09960 4.15095 4.15626 4.17618 4.26760 4.34513 4.49344 4.50306 4.52309 4.58768 4.66148 4.71327 4.76179 4.77075 4.80602 4.83907 4.85078 4.87547 5.02944 5.03561 5.09120 5.12585 5.13267 5.17385 5.20684 5.22145 5.23775 5.36682 5.44156 5.45365 5.46475 5.54418 5.59076 5.63525 5.79058 6.65030 7.29379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.378 4.378 3 C -0.142 4.142 4 C -0.138 4.138 5 Si 1.318 2.682 6 C -0.517 4.517 7 C -0.524 4.524 8 O -0.631 6.631 9 C 0.086 3.914 10 C -0.031 4.031 11 C -0.025 4.025 12 C -0.029 4.029 13 N -0.243 5.243 14 C 0.097 3.903 15 C -0.106 4.106 16 C -0.083 4.083 17 C -0.117 4.117 18 C -0.104 4.104 19 C -0.092 4.092 20 O -0.555 6.555 21 Si 0.992 3.008 22 H -0.241 1.241 23 H -0.280 1.280 24 H -0.246 1.246 25 C -0.092 4.092 26 N -0.116 5.116 27 N -0.290 5.290 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.091 0.909 46 H 0.120 0.880 47 H 0.241 0.759 48 H 0.168 0.832 49 H 0.177 0.823 50 H 0.148 0.852 51 H 0.120 0.880 52 H 0.390 0.610 53 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.598 -2.358 2.805 9.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.421 4.421 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.447 2.553 6 C -0.618 4.618 7 C -0.624 4.624 8 O -0.591 6.591 9 C 0.010 3.990 10 C -0.070 4.070 11 C -0.163 4.163 12 C -0.177 4.177 13 N -0.030 5.030 14 C 0.007 3.993 15 C -0.126 4.126 16 C -0.102 4.102 17 C -0.136 4.136 18 C -0.105 4.105 19 C -0.201 4.201 20 O -0.363 6.363 21 Si 0.814 3.186 22 H -0.164 1.164 23 H -0.206 1.206 24 H -0.170 1.170 25 C -0.112 4.112 26 N -0.093 5.093 27 N -0.157 5.157 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.139 0.861 47 H 0.257 0.743 48 H 0.185 0.815 49 H 0.194 0.806 50 H 0.165 0.835 51 H 0.138 0.862 52 H 0.239 0.761 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.216 -2.696 3.836 8.606 hybrid contribution -0.203 0.573 -0.746 0.962 sum -7.419 -2.123 3.090 8.313 Atomic orbital electron populations 1.21543 0.93799 1.02091 1.01929 1.25835 1.00745 1.02806 1.12717 1.21611 1.01150 0.94806 1.02318 1.21550 1.00855 1.00220 0.96866 0.76183 0.61839 0.52925 0.64344 1.27087 1.07189 1.09718 1.17847 1.27206 1.26418 1.04693 1.04123 1.85298 1.79404 1.46460 1.47910 1.21957 0.98430 0.91805 0.86834 1.19950 1.03283 0.91444 0.92339 1.22285 0.88968 1.03844 1.01159 1.24277 1.01210 1.00689 0.91568 1.44848 1.05691 1.32679 1.19755 1.18029 0.95681 0.97664 0.87970 1.21355 0.92279 0.98608 1.00343 1.21425 1.01730 0.95026 0.91978 1.21554 0.92121 0.99568 1.00314 1.20344 0.95614 0.98152 0.96350 1.25276 0.93712 1.01136 0.99951 1.86523 1.35232 1.41523 1.72977 0.85094 0.78050 0.79017 0.76436 1.16427 1.20591 1.16951 1.20765 0.99382 0.97415 0.93619 1.78383 1.03232 1.15320 1.12408 1.75037 1.22449 1.12552 1.05637 0.92022 0.93203 0.92077 0.92133 0.92889 0.91771 0.92237 0.93109 0.92487 0.91742 0.90411 0.90545 0.91271 0.90454 0.91981 0.91913 0.92914 0.89039 0.86144 0.74304 0.81452 0.80607 0.83468 0.86246 0.76102 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.01 7.85 71.98 0.56 0.58 16 2 C -0.38 -0.03 0.53 -10.79 -0.01 -0.04 16 3 C -0.14 0.07 7.85 71.98 0.56 0.63 16 4 C -0.14 -0.16 7.85 71.98 0.56 0.41 16 5 Si 1.32 -0.71 8.45 68.60 0.58 -0.13 16 6 C -0.52 0.18 8.50 113.37 0.96 1.14 16 7 C -0.52 -1.08 8.50 113.37 0.96 -0.11 16 8 O -0.63 -0.79 8.56 -148.98 -1.28 -2.06 16 9 C 0.09 0.11 5.10 71.98 0.37 0.47 16 10 C -0.03 0.02 6.16 29.85 0.18 0.21 16 11 C -0.03 -0.09 6.50 41.60 0.27 0.18 16 12 C -0.03 0.02 10.83 83.37 0.90 0.92 16 13 N -0.24 -1.18 3.56 -187.04 -0.67 -1.84 16 14 C 0.10 0.11 6.67 38.08 0.25 0.37 16 15 C -0.11 0.66 9.46 22.38 0.21 0.87 16 16 C -0.08 0.72 10.04 22.25 0.22 0.94 16 17 C -0.12 0.70 8.67 22.29 0.19 0.89 16 18 C -0.10 0.18 5.39 -19.88 -0.11 0.07 16 19 C -0.09 0.20 2.82 71.24 0.20 0.40 16 20 O -0.56 -0.37 12.76 -148.98 -1.90 -2.28 16 21 Si 0.99 -4.53 25.07 68.60 1.72 -2.81 16 22 H -0.24 1.43 7.11 99.48 0.71 2.13 16 23 H -0.28 -0.11 7.11 99.48 0.71 0.60 16 24 H -0.25 1.24 7.11 99.48 0.71 1.94 16 25 C -0.09 -0.26 9.18 22.38 0.21 -0.05 16 26 N -0.12 -1.39 12.43 37.02 0.46 -0.93 16 27 N -0.29 -3.37 12.39 -48.59 -0.60 -3.97 16 28 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 29 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.06 -0.01 7.96 -2.39 -0.02 -0.03 16 31 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 32 H 0.05 0.01 8.14 -2.39 -0.02 0.00 16 33 H 0.06 -0.14 7.79 -2.39 -0.02 -0.15 16 34 H 0.06 0.08 7.97 -2.39 -0.02 0.06 16 35 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.06 0.03 7.79 -2.38 -0.02 0.01 16 37 H 0.06 0.01 7.48 -2.39 -0.02 0.00 16 38 H 0.08 -0.08 7.79 -2.39 -0.02 -0.10 16 39 H 0.08 -0.08 7.79 -2.39 -0.02 -0.09 16 40 H 0.07 0.19 7.79 -2.38 -0.02 0.17 16 41 H 0.08 0.07 7.79 -2.39 -0.02 0.05 16 42 H 0.06 0.20 7.48 -2.39 -0.02 0.18 16 43 H 0.06 -0.04 7.21 -2.39 -0.02 -0.06 16 44 H 0.05 0.18 7.21 -2.39 -0.02 0.17 16 45 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.12 -0.79 8.12 -2.39 -0.02 -0.81 16 47 H 0.24 -2.78 7.13 -2.91 -0.02 -2.80 16 48 H 0.17 -2.14 6.79 -2.91 -0.02 -2.16 16 49 H 0.18 -2.66 8.06 -2.91 -0.02 -2.68 16 50 H 0.15 -1.40 4.87 -2.91 -0.01 -1.42 16 51 H 0.12 -0.30 7.96 -2.39 -0.02 -0.32 16 52 H 0.39 -2.45 8.70 -74.06 -0.64 -3.10 16 53 H 0.12 0.88 7.70 -2.91 -0.02 0.86 16 Total: 0.00 -19.69 425.97 5.84 -13.85 By element: Atomic # 1 Polarization: -8.73 SS G_CDS: 1.00 Total: -7.72 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 6.52 Total: 7.89 kcal Atomic # 7 Polarization: -5.93 SS G_CDS: -0.81 Total: -6.74 kcal Atomic # 8 Polarization: -1.16 SS G_CDS: -3.18 Total: -4.34 kcal Atomic # 14 Polarization: -5.24 SS G_CDS: 2.30 Total: -2.94 kcal Total: -19.69 5.84 -13.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_16485582_13581112.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.548 kcal (2) G-P(sol) polarization free energy of solvation -19.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds