Wall clock time and date at job start Mon Mar 8 2021 09:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86302 * 109.47310 * 2 1 4 4 C 1.50698 * 109.47106 * 120.00277 * 2 1 3 5 5 C 1.38258 * 119.96580 * 244.97574 * 4 2 1 6 6 C 1.38294 * 120.13384 * 180.02562 * 5 4 2 7 7 C 1.38111 * 120.06304 * 359.69998 * 6 5 4 8 8 C 1.38845 * 119.93151 * 0.57416 * 7 6 5 9 9 N 1.40247 * 120.06436 * 179.71998 * 8 7 6 10 10 C 1.36120 * 125.94240 * 0.02562 * 9 8 7 11 11 C 1.35367 * 106.04960 * 180.18154 * 10 9 8 12 12 C 1.50695 * 126.73332 * 179.85253 * 11 10 9 13 13 H 1.08998 * 109.47678 * 154.70725 * 12 11 10 14 14 C 1.53002 * 109.47445 * 274.71406 * 12 11 10 15 15 C 1.52997 * 109.47369 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47404 * 300.00003 * 15 14 12 17 17 H 1.09008 * 109.46970 * 299.99951 * 16 15 14 18 18 C 1.52997 * 109.47404 * 180.02562 * 16 15 14 19 19 O 1.42898 * 109.47319 * 174.99993 * 18 16 15 20 20 C 1.53001 * 109.47368 * 59.99530 * 16 15 14 21 21 C 1.52997 * 109.47242 * 300.00569 * 20 16 15 22 22 N 1.33780 * 106.53738 * 359.59154 * 11 10 9 23 23 N 1.28605 * 109.05823 * 0.26019 * 22 11 10 24 24 C 1.38143 * 119.97014 * 65.00127 * 4 2 1 25 25 H 0.96699 * 114.00703 * 59.99977 * 1 2 3 26 26 H 1.09003 * 109.47166 * 240.00245 * 2 1 3 27 27 H 1.48503 * 109.99841 * 298.68259 * 3 2 1 28 28 H 1.48498 * 109.99976 * 59.99984 * 3 2 1 29 29 H 1.08004 * 119.93251 * 359.97438 * 5 4 2 30 30 H 1.07999 * 119.97546 * 179.97438 * 6 5 4 31 31 H 1.07996 * 120.03537 * 180.29679 * 7 6 5 32 32 H 1.08004 * 126.97468 * 0.06270 * 10 9 8 33 33 H 1.08995 * 109.46734 * 59.99076 * 14 12 11 34 34 H 1.09002 * 109.46264 * 300.00012 * 14 12 11 35 35 H 1.09000 * 109.46875 * 179.97438 * 15 14 12 36 36 H 1.09008 * 109.47017 * 59.99925 * 15 14 12 37 37 H 1.09002 * 109.47153 * 54.99686 * 18 16 15 38 38 H 1.09001 * 109.46832 * 294.99876 * 18 16 15 39 39 H 0.96701 * 113.99881 * 180.02562 * 19 18 16 40 40 H 1.09008 * 109.46731 * 60.00275 * 20 16 15 41 41 H 1.08998 * 109.47430 * 180.02562 * 20 16 15 42 42 H 1.08998 * 109.46934 * 299.99660 * 21 20 16 43 43 H 1.09000 * 109.47325 * 179.97438 * 21 20 16 44 44 H 1.07998 * 120.03461 * 359.97173 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7105 1.2304 5 6 2.6391 -0.0117 2.1907 6 6 3.1022 -0.6603 3.3209 7 6 2.8532 -2.0074 3.4964 8 6 2.1475 -2.7130 2.5310 9 7 1.8982 -4.0823 2.7036 10 6 2.2895 -4.8380 3.7660 11 6 1.8438 -6.0919 3.5178 12 6 2.0254 -7.3032 4.3956 13 1 1.2276 -8.0189 4.1970 14 6 3.3785 -7.9517 4.0965 15 6 3.5631 -9.1812 4.9882 16 6 3.5144 -8.7576 6.4575 17 1 4.3122 -8.0418 6.6559 18 6 3.6996 -9.9870 7.3492 19 8 3.7707 -9.5775 8.7164 20 6 2.1613 -8.1090 6.7568 21 6 1.9767 -6.8796 5.8651 22 7 1.2055 -6.0436 2.3431 23 7 1.2552 -4.8420 1.8873 24 6 1.6845 -2.0594 1.3975 25 1 -0.3934 0.4417 -0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 1.5878 2.4586 -1.2242 28 1 1.5615 2.4679 1.2085 29 1 2.8316 1.0427 2.0575 30 1 3.6552 -0.1121 4.0692 31 1 3.2109 -2.5124 4.3815 32 1 2.8447 -4.5052 4.6306 33 1 4.1762 -7.2360 4.2952 34 1 3.4133 -8.2531 3.0496 35 1 4.5269 -9.6434 4.7747 36 1 2.7653 -9.8970 4.7898 37 1 4.6219 -10.4992 7.0749 38 1 2.8551 -10.6631 7.2159 39 1 3.8886 -10.3072 9.3399 40 1 1.3635 -8.8249 6.5584 41 1 2.1268 -7.8068 7.8034 42 1 2.7745 -6.1638 6.0635 43 1 1.0126 -6.4178 6.0779 44 1 1.1314 -2.6047 0.6471 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273910_16485582_14775216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:55:51 Heat of formation + Delta-G solvation = 37.324230 kcal Electronic energy + Delta-G solvation = -25782.827358 eV Core-core repulsion = 22089.411706 eV Total energy + Delta-G solvation = -3693.415652 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.62417 -40.79102 -39.97659 -37.97862 -37.43231 -35.82135 -33.96510 -32.77371 -31.72811 -31.37037 -30.70749 -27.19266 -26.51595 -25.62365 -24.03846 -23.55495 -22.62433 -21.98447 -21.41871 -20.55989 -19.23482 -18.65379 -18.16042 -17.67260 -17.61814 -16.77027 -16.52099 -16.34543 -15.95385 -15.68133 -15.33715 -15.15579 -14.97217 -14.76413 -14.74482 -14.22575 -14.00155 -13.86929 -13.54860 -13.52335 -13.16324 -13.06712 -12.87723 -12.63021 -12.31516 -12.23501 -12.07415 -11.98709 -11.86782 -11.79767 -11.41055 -11.19513 -11.14808 -10.75927 -10.62247 -10.33556 -10.09953 -9.73289 -4.94606 -0.54600 0.05768 0.85041 1.10896 1.28343 1.33081 1.59860 1.92948 2.44205 3.04249 3.20257 3.36313 3.42898 3.63949 3.66178 3.75809 3.82928 3.88489 3.98048 4.05412 4.08334 4.13076 4.19189 4.22827 4.35369 4.42430 4.46126 4.50425 4.56185 4.57690 4.65643 4.69649 4.78241 4.79564 4.85585 4.99264 5.06196 5.10932 5.15631 5.18893 5.22266 5.22279 5.26700 5.32997 5.45254 5.46978 5.55800 5.77417 6.50045 6.92689 7.27916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.100 4.100 3 Si 0.785 3.215 4 C -0.066 4.066 5 C -0.107 4.107 6 C -0.081 4.081 7 C -0.107 4.107 8 C 0.095 3.905 9 N -0.240 5.240 10 C -0.034 4.034 11 C -0.013 4.013 12 C 0.004 3.996 13 H 0.079 0.921 14 C -0.102 4.102 15 C -0.107 4.107 16 C -0.086 4.086 17 H 0.075 0.925 18 C 0.075 3.925 19 O -0.594 6.594 20 C -0.106 4.106 21 C -0.106 4.106 22 N -0.295 5.295 23 N -0.120 5.120 24 C -0.097 4.097 25 H 0.396 0.604 26 H 0.090 0.910 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.158 0.842 30 H 0.182 0.818 31 H 0.167 0.833 32 H 0.232 0.768 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.395 0.605 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.115 3.032 3.502 8.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.207 4.207 3 Si 0.689 3.311 4 C -0.067 4.067 5 C -0.125 4.125 6 C -0.099 4.099 7 C -0.128 4.128 8 C 0.005 3.995 9 N -0.027 5.027 10 C -0.182 4.182 11 C -0.151 4.151 12 C -0.017 4.017 13 H 0.098 0.902 14 C -0.140 4.140 15 C -0.145 4.145 16 C -0.104 4.104 17 H 0.094 0.906 18 C -0.002 4.002 19 O -0.402 6.402 20 C -0.143 4.143 21 C -0.144 4.144 22 N -0.161 5.161 23 N -0.096 5.096 24 C -0.117 4.117 25 H 0.247 0.753 26 H 0.108 0.892 27 H -0.217 1.217 28 H -0.212 1.212 29 H 0.175 0.825 30 H 0.200 0.800 31 H 0.184 0.816 32 H 0.249 0.751 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.244 0.756 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.122 3.981 2.395 7.685 hybrid contribution -1.107 -0.937 0.106 1.454 sum 5.015 3.044 2.501 6.377 Atomic orbital electron populations 1.86549 1.18582 1.80967 1.51060 1.25285 0.84213 1.13164 0.98053 0.93999 0.89701 0.70526 0.76893 1.19380 0.98441 0.92284 0.96582 1.21551 0.96625 1.01096 0.93188 1.21465 0.97990 0.92735 0.97717 1.21369 0.97606 0.95518 0.98264 1.18023 1.04172 0.78407 0.98914 1.44824 1.34734 1.08564 1.14601 1.24110 1.07080 0.90983 0.96065 1.22438 1.01043 0.96772 0.94845 1.19546 0.99206 0.90605 0.92324 0.90248 1.21488 0.95545 0.97597 0.99382 1.21473 1.02846 0.97277 0.92893 1.21153 0.98433 0.96944 0.93910 0.90612 1.22296 1.00220 0.96220 0.81470 1.86419 1.96696 1.39592 1.17521 1.21462 0.96635 0.96822 0.99413 1.21583 1.02648 0.98458 0.91680 1.75039 1.19095 1.10533 1.11399 1.78343 1.15943 0.97035 1.18324 1.20769 0.99281 0.95063 0.96594 0.75306 0.89241 1.21701 1.21242 0.82463 0.80047 0.81575 0.75129 0.90799 0.92569 0.90558 0.91436 0.92833 0.93200 0.75595 0.92187 0.91569 0.90032 0.91875 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.01 12.81 -148.98 -1.91 -3.91 16 2 C -0.10 0.05 2.79 71.24 0.20 0.24 16 3 Si 0.79 -3.43 29.85 68.60 2.05 -1.39 16 4 C -0.07 -0.11 5.38 -19.88 -0.11 -0.21 16 5 C -0.11 0.40 8.67 22.29 0.19 0.60 16 6 C -0.08 0.55 10.04 22.25 0.22 0.77 16 7 C -0.11 0.40 9.46 22.38 0.21 0.61 16 8 C 0.10 0.41 6.68 38.07 0.25 0.66 16 9 N -0.24 -1.90 3.56 -187.04 -0.67 -2.57 16 10 C -0.03 -0.09 10.09 83.36 0.84 0.75 16 11 C -0.01 -0.09 6.16 41.60 0.26 0.17 16 12 C 0.00 0.01 2.65 -11.54 -0.03 -0.02 16 13 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 14 C -0.10 0.05 5.19 30.59 0.16 0.21 16 15 C -0.11 0.29 5.20 30.59 0.16 0.45 16 16 C -0.09 0.17 2.43 -10.80 -0.03 0.14 16 17 H 0.08 -0.09 8.14 -2.38 -0.02 -0.10 16 18 C 0.08 -0.17 6.43 71.98 0.46 0.30 16 19 O -0.59 -0.09 13.20 -148.98 -1.97 -2.06 16 20 C -0.11 0.11 5.10 30.59 0.16 0.27 16 21 C -0.11 0.19 4.80 30.60 0.15 0.34 16 22 N -0.30 -4.33 12.40 -48.59 -0.60 -4.94 16 23 N -0.12 -1.78 12.41 37.02 0.46 -1.32 16 24 C -0.10 -0.60 9.25 22.38 0.21 -0.39 16 25 H 0.40 -1.80 8.74 -74.06 -0.65 -2.45 16 26 H 0.09 -0.27 7.96 -2.39 -0.02 -0.28 16 27 H -0.29 -0.20 7.11 99.48 0.71 0.51 16 28 H -0.29 -0.30 7.05 99.48 0.70 0.40 16 29 H 0.16 -1.31 4.86 -2.91 -0.01 -1.33 16 30 H 0.18 -2.56 8.06 -2.91 -0.02 -2.58 16 31 H 0.17 -1.68 6.77 -2.91 -0.02 -1.70 16 32 H 0.23 -1.67 6.53 -2.91 -0.02 -1.69 16 33 H 0.07 -0.16 8.14 -2.39 -0.02 -0.17 16 34 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.08 -0.31 8.14 -2.39 -0.02 -0.32 16 36 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 37 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.39 -3.03 9.12 -74.06 -0.68 -3.71 16 40 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 41 H 0.07 0.06 7.82 -2.39 -0.02 0.04 16 42 H 0.08 -0.40 7.37 -2.39 -0.02 -0.42 16 43 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.12 1.22 7.69 -2.91 -0.02 1.20 16 Total: 0.00 -24.61 355.03 0.41 -24.20 By element: Atomic # 1 Polarization: -12.62 SS G_CDS: -0.26 Total: -12.89 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 3.31 Total: 4.87 kcal Atomic # 7 Polarization: -8.02 SS G_CDS: -0.81 Total: -8.83 kcal Atomic # 8 Polarization: -2.10 SS G_CDS: -3.87 Total: -5.97 kcal Atomic # 14 Polarization: -3.43 SS G_CDS: 2.05 Total: -1.39 kcal Total: -24.61 0.41 -24.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_16485582_14775216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.523 kcal (2) G-P(sol) polarization free energy of solvation -24.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds