Wall clock time and date at job start Mon Mar 8 2021 06:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00904 * 1 3 3 H 1.00893 * 109.46980 * 1 2 4 4 H 1.00905 * 109.46536 * 239.99984 * 1 2 3 5 5 C 1.46901 * 109.47130 * 120.00313 * 1 2 3 6 6 H 1.08999 * 109.47074 * 179.97438 * 5 1 2 7 7 C 1.52999 * 109.47194 * 299.99776 * 5 1 2 8 8 C 1.53003 * 109.47054 * 60.00216 * 7 5 1 9 9 C 1.53006 * 109.46972 * 60.00036 * 8 7 5 10 10 H 1.08996 * 109.46970 * 59.99659 * 9 8 7 11 11 C 1.50695 * 109.46688 * 180.02562 * 9 8 7 12 12 C 1.35369 * 126.73552 * 35.26846 * 11 9 8 13 13 N 1.36119 * 106.05029 * 180.14481 * 12 11 9 14 14 C 1.40255 * 125.94181 * 179.90432 * 13 12 11 15 15 C 1.38793 * 120.06566 * 179.71387 * 14 13 12 16 16 C 1.38149 * 119.93354 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.96334 * 179.97438 * 16 15 14 18 18 O 1.42907 * 109.46956 * 65.00833 * 17 16 15 19 19 Si 1.86308 * 109.46899 * 185.00155 * 17 16 15 20 20 C 1.38254 * 120.06507 * 0.02562 * 16 15 14 21 21 C 1.38295 * 120.12905 * 359.97438 * 20 16 15 22 22 C 1.38105 * 120.06851 * 359.72090 * 21 20 16 23 23 N 1.28726 * 108.11721 * 359.64336 * 13 12 11 24 24 N 1.28601 * 110.23443 * 0.22584 * 23 13 12 25 25 C 1.53001 * 109.46838 * 299.99874 * 9 8 7 26 26 C 1.52997 * 109.47263 * 60.00257 * 5 1 2 27 27 H 1.09001 * 109.47017 * 180.02562 * 7 5 1 28 28 H 1.09000 * 109.47153 * 299.99908 * 7 5 1 29 29 H 1.09001 * 109.47151 * 299.99848 * 8 7 5 30 30 H 1.08999 * 109.46765 * 179.97438 * 8 7 5 31 31 H 1.07996 * 126.97718 * 0.02562 * 12 11 9 32 32 H 1.08000 * 120.03297 * 359.97438 * 15 14 13 33 33 H 1.08994 * 109.48271 * 305.00686 * 17 16 15 34 34 H 0.96703 * 113.99935 * 179.97438 * 18 17 16 35 35 H 1.48494 * 110.00109 * 300.00339 * 19 17 16 36 36 H 1.48500 * 109.99674 * 61.32435 * 19 17 16 37 37 H 1.08001 * 119.93120 * 180.02562 * 20 16 15 38 38 H 1.07999 * 119.96585 * 179.97438 * 21 20 16 39 39 H 1.07999 * 120.03717 * 180.28460 * 22 21 20 40 40 H 1.09000 * 109.46789 * 180.02562 * 25 9 8 41 41 H 1.09001 * 109.47199 * 300.00135 * 25 9 8 42 42 H 1.08994 * 109.47293 * 180.02562 * 26 5 1 43 43 H 1.08999 * 109.47479 * 59.99339 * 26 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9512 0.0000 4 1 -0.3363 -0.4757 0.8239 5 6 -0.4897 -0.6926 -1.1994 6 1 -1.5797 -0.6930 -1.1992 7 6 0.0203 0.0286 -2.4487 8 6 1.5503 0.0286 -2.4487 9 6 2.0603 -1.4139 -2.4487 10 1 1.6968 -1.9278 -3.3386 11 6 3.5672 -1.4139 -2.4481 12 6 4.3766 -0.5282 -1.8213 13 7 5.6502 -0.9187 -2.1012 14 6 6.8213 -0.2870 -1.6577 15 6 8.0629 -0.7952 -2.0133 16 6 9.2146 -0.1705 -1.5754 17 6 10.5630 -0.7221 -1.9607 18 8 10.7357 -0.6134 -3.3751 19 14 11.8998 0.2454 -1.0958 20 6 9.1313 0.9595 -0.7833 21 6 7.8955 1.4681 -0.4273 22 6 6.7407 0.8516 -0.8672 23 7 5.5929 -1.9719 -2.8391 24 7 4.3676 -2.2918 -3.0633 25 6 1.5503 -2.1351 -1.1994 26 6 0.0202 -2.1351 -1.1993 27 1 -0.3435 -0.4850 -3.3386 28 1 -0.3431 1.0563 -2.4487 29 1 1.9137 0.5425 -1.5588 30 1 1.9135 0.5420 -3.3390 31 1 4.0735 0.3179 -1.2225 32 1 8.1285 -1.6782 -2.6318 33 1 10.6247 -1.7698 -1.6667 34 1 11.5841 -0.9498 -3.6948 35 1 11.8266 1.6756 -1.4885 36 1 11.7503 0.1144 0.3758 37 1 10.0331 1.4464 -0.4425 38 1 7.8335 2.3507 0.1920 39 1 5.7759 1.2519 -0.5928 40 1 1.9140 -3.1626 -1.1991 41 1 1.9137 -1.6212 -0.3094 42 1 -0.3427 -2.6488 -2.0895 43 1 -0.3430 -2.6488 -0.3093 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273910_16485582_17761092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:44:52 Heat of formation + Delta-G solvation = 178.544818 kcal Electronic energy + Delta-G solvation = -24546.102536 eV Core-core repulsion = 21098.411210 eV Total energy + Delta-G solvation = -3447.691326 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 302.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.70701 -41.53863 -40.87463 -37.88882 -36.91937 -35.65923 -33.21317 -32.56470 -32.05501 -31.43845 -29.88229 -27.10410 -25.79592 -24.98405 -23.92593 -23.28018 -22.13109 -21.87218 -20.66981 -19.33682 -19.02497 -18.56388 -18.54027 -17.93496 -17.72411 -16.89592 -16.72450 -16.50994 -16.28731 -15.63456 -15.27998 -15.10457 -15.03173 -14.83430 -14.43005 -14.26719 -13.93859 -13.74090 -13.47881 -13.45356 -13.38218 -13.02169 -12.73566 -12.42934 -12.26984 -12.20563 -12.17776 -12.01157 -11.65938 -11.54577 -11.36525 -10.53054 -10.43412 -10.19988 -9.88773 -4.97396 -0.67950 -0.09007 0.75699 1.02479 1.23270 1.30093 1.58000 1.66505 1.84177 2.30070 2.94685 3.12874 3.16410 3.34347 3.36096 3.51022 3.55984 3.59593 3.66298 3.76388 3.87059 3.89381 3.94174 3.97116 4.01452 4.08237 4.16877 4.24527 4.27613 4.33769 4.39274 4.49712 4.63980 4.66890 4.67550 4.84244 4.86691 4.90952 4.93233 4.95595 5.05369 5.12785 5.20632 5.22525 5.29050 5.33451 5.34871 5.64588 6.73729 7.25241 Molecular weight = 302.16amu Principal moments of inertia in cm(-1) A = 0.030843 B = 0.003202 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.604248 B = 8743.190353 C = 9246.789695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 H 0.432 0.568 3 H 0.453 0.547 4 H 0.451 0.549 5 C 0.061 3.939 6 H 0.168 0.832 7 C -0.141 4.141 8 C -0.126 4.126 9 C -0.006 4.006 10 H 0.071 0.929 11 C -0.021 4.021 12 C -0.031 4.031 13 N -0.241 5.241 14 C 0.103 3.897 15 C -0.097 4.097 16 C -0.073 4.073 17 C -0.091 4.091 18 O -0.567 6.567 19 Si 0.771 3.229 20 C -0.131 4.131 21 C -0.085 4.085 22 C -0.095 4.095 23 N -0.133 5.133 24 N -0.303 5.303 25 C -0.124 4.124 26 C -0.141 4.141 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.254 0.746 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.405 0.595 35 H -0.287 1.287 36 H -0.279 1.279 37 H 0.128 0.872 38 H 0.179 0.821 39 H 0.191 0.809 40 H 0.047 0.953 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.291 7.751 13.260 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.031 5.031 2 H 0.263 0.737 3 H 0.285 0.715 4 H 0.283 0.717 5 C -0.044 4.044 6 H 0.186 0.814 7 C -0.179 4.179 8 C -0.164 4.164 9 C -0.027 4.027 10 H 0.090 0.910 11 C -0.160 4.160 12 C -0.180 4.180 13 N -0.028 5.028 14 C 0.012 3.988 15 C -0.117 4.117 16 C -0.074 4.074 17 C -0.200 4.200 18 O -0.378 6.378 19 Si 0.675 3.325 20 C -0.149 4.149 21 C -0.103 4.103 22 C -0.115 4.115 23 N -0.110 5.110 24 N -0.168 5.168 25 C -0.162 4.162 26 C -0.179 4.179 27 H 0.103 0.897 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.082 0.918 31 H 0.270 0.730 32 H 0.140 0.860 33 H 0.105 0.895 34 H 0.256 0.744 35 H -0.214 1.214 36 H -0.205 1.205 37 H 0.145 0.855 38 H 0.196 0.804 39 H 0.208 0.792 40 H 0.066 0.934 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.994 7.371 12.814 29.904 hybrid contribution 0.112 -0.148 -0.229 0.294 sum -25.883 7.224 12.585 29.673 Atomic orbital electron populations 1.42554 1.21554 1.21525 1.17456 0.73743 0.71494 0.71697 1.22840 1.04637 0.92497 0.84449 0.81438 1.22071 0.94025 1.03905 0.97889 1.21844 0.96370 0.93036 1.05176 1.19758 0.82807 0.99358 1.00763 0.91040 1.22759 0.99373 0.93958 0.99878 1.24397 0.80970 1.05469 1.07133 1.44834 1.07162 1.18710 1.32091 1.17925 0.82852 0.96339 1.01698 1.20788 0.90641 1.00855 0.99398 1.19549 0.94243 0.95740 0.97829 1.24988 1.00337 1.06513 0.88137 1.86432 1.44419 1.87043 1.19859 0.93641 0.85141 0.77258 0.76422 1.21407 0.99920 0.95160 0.98391 1.21447 0.89911 1.00413 0.98502 1.21355 1.02254 0.91973 0.95884 1.78543 1.16600 1.03021 1.12817 1.75110 0.96010 1.24959 1.20730 1.21766 0.96365 1.01356 0.96736 1.22061 0.93764 0.95307 1.06775 0.89719 0.86360 0.87094 0.91753 0.73029 0.85980 0.89471 0.74390 1.21363 1.20502 0.85495 0.80381 0.79183 0.93406 0.87863 0.89695 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.63 48.03 4.05 -168.68 -0.68 47.35 16 2 H 0.43 -33.16 5.25 -89.69 -0.47 -33.63 16 3 H 0.45 -37.07 8.96 -89.70 -0.80 -37.88 16 4 H 0.45 -36.44 8.96 -89.69 -0.80 -37.25 16 5 C 0.06 -3.97 3.50 44.91 0.16 -3.81 16 6 H 0.17 -11.38 8.14 -2.39 -0.02 -11.40 16 7 C -0.14 7.97 5.59 30.59 0.17 8.14 16 8 C -0.13 6.33 4.54 30.60 0.14 6.47 16 9 C -0.01 0.25 2.65 -11.54 -0.03 0.22 16 10 H 0.07 -2.30 8.14 -2.39 -0.02 -2.32 16 11 C -0.02 0.56 6.16 41.60 0.26 0.82 16 12 C -0.03 0.96 10.10 83.36 0.84 1.80 16 13 N -0.24 4.33 3.56 -187.05 -0.67 3.67 16 14 C 0.10 -1.81 6.68 38.07 0.25 -1.56 16 15 C -0.10 1.10 9.25 22.38 0.21 1.30 16 16 C -0.07 0.91 5.38 -19.88 -0.11 0.80 16 17 C -0.09 1.30 2.79 71.23 0.20 1.50 16 18 O -0.57 7.00 12.81 -148.98 -1.91 5.09 16 19 Si 0.77 -12.85 29.85 68.60 2.05 -10.81 16 20 C -0.13 2.10 8.67 22.29 0.19 2.30 16 21 C -0.08 1.99 10.04 22.25 0.22 2.22 16 22 C -0.09 2.49 9.46 22.38 0.21 2.70 16 23 N -0.13 1.16 12.42 37.02 0.46 1.62 16 24 N -0.30 3.60 12.39 -48.59 -0.60 3.00 16 25 C -0.12 5.78 4.92 30.60 0.15 5.93 16 26 C -0.14 7.69 5.59 30.59 0.17 7.86 16 27 H 0.08 -4.15 8.14 -2.39 -0.02 -4.17 16 28 H 0.12 -7.10 8.14 -2.39 -0.02 -7.12 16 29 H 0.11 -6.74 5.89 -2.39 -0.01 -6.75 16 30 H 0.06 -2.69 8.14 -2.39 -0.02 -2.71 16 31 H 0.25 -11.68 6.54 -2.91 -0.02 -11.70 16 32 H 0.12 -0.87 7.69 -2.91 -0.02 -0.89 16 33 H 0.09 -1.46 7.96 -2.39 -0.02 -1.48 16 34 H 0.40 -8.88 8.74 -74.06 -0.65 -9.52 16 35 H -0.29 2.99 7.05 99.48 0.70 3.69 16 36 H -0.28 3.50 7.11 99.48 0.71 4.20 16 37 H 0.13 -2.04 4.86 -2.91 -0.01 -2.05 16 38 H 0.18 -5.44 8.06 -2.91 -0.02 -5.47 16 39 H 0.19 -7.32 6.77 -2.91 -0.02 -7.34 16 40 H 0.05 -1.68 8.14 -2.39 -0.02 -1.70 16 41 H 0.10 -5.75 6.65 -2.39 -0.02 -5.76 16 42 H 0.08 -4.01 8.14 -2.39 -0.02 -4.03 16 43 H 0.11 -6.33 8.14 -2.39 -0.02 -6.34 16 Total: 1.00 -105.08 336.01 0.06 -105.01 By element: Atomic # 1 Polarization: -190.00 SS G_CDS: -1.62 Total: -191.62 kcal Atomic # 6 Polarization: 33.64 SS G_CDS: 3.04 Total: 36.68 kcal Atomic # 7 Polarization: 57.14 SS G_CDS: -1.49 Total: 55.65 kcal Atomic # 8 Polarization: 7.00 SS G_CDS: -1.91 Total: 5.09 kcal Atomic # 14 Polarization: -12.85 SS G_CDS: 2.05 Total: -10.81 kcal Total: -105.08 0.06 -105.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_16485582_17761092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 283.558 kcal (2) G-P(sol) polarization free energy of solvation -105.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds