Wall clock time and date at job start Mon Mar 8 2021 07:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 111.24359 * 2 1 4 4 C 1.89333 * 111.45943 * 234.86070 * 2 1 3 5 5 C 1.55156 * 101.34817 * 245.86257 * 4 2 1 6 6 C 1.53566 * 111.29034 * 331.41585 * 5 4 2 7 7 C 1.50696 * 109.47244 * 169.06226 * 6 5 4 8 8 C 1.35355 * 126.75039 * 324.66298 * 7 6 5 9 9 N 1.35320 * 106.17269 * 179.85684 * 8 7 6 10 10 C 1.46498 * 125.86400 * 180.12013 * 9 8 7 11 11 C 1.53000 * 109.47307 * 124.15035 * 10 9 8 12 12 C 1.53002 * 112.99663 * 289.35325 * 11 10 9 13 13 O 1.42897 * 109.47102 * 60.00114 * 12 11 10 14 14 Si 1.86302 * 109.46984 * 179.97438 * 12 11 10 15 15 H 1.48503 * 109.46981 * 60.00081 * 14 12 11 16 16 H 1.48499 * 109.47099 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46976 * 300.00129 * 14 12 11 18 18 C 1.54031 * 113.81952 * 157.36372 * 11 10 9 19 19 O 1.44171 * 85.52129 * 223.19517 * 18 11 10 20 20 C 1.44177 * 93.33621 * 24.19174 * 19 18 11 21 21 N 1.28712 * 108.26279 * 0.41521 * 9 8 7 22 22 N 1.28629 * 110.18200 * 359.73758 * 21 9 8 23 23 C 1.55914 * 109.51125 * 49.03489 * 6 5 4 24 24 H 1.09000 * 109.47180 * 294.93224 * 1 2 3 25 25 H 1.08997 * 109.47122 * 174.93048 * 1 2 3 26 26 H 1.08998 * 109.46780 * 54.93297 * 1 2 3 27 27 H 1.09006 * 109.46750 * 59.99796 * 3 2 1 28 28 H 1.08999 * 109.47163 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47117 * 300.00434 * 3 2 1 30 30 H 1.08995 * 111.05345 * 3.88152 * 4 2 1 31 31 H 1.09006 * 111.04964 * 127.85011 * 4 2 1 32 32 H 1.08997 * 109.12303 * 210.92752 * 5 4 2 33 33 H 1.09002 * 109.03552 * 91.84354 * 5 4 2 34 34 H 1.09007 * 109.43086 * 289.03365 * 6 5 4 35 35 H 1.07995 * 126.91412 * 359.97438 * 8 7 6 36 36 H 1.09003 * 109.47152 * 244.14608 * 10 9 8 37 37 H 1.09000 * 109.47446 * 4.14573 * 10 9 8 38 38 H 1.09005 * 109.47184 * 299.99633 * 12 11 10 39 39 H 0.96708 * 113.99787 * 180.02562 * 13 12 11 40 40 H 1.09002 * 113.86179 * 337.34761 * 18 11 10 41 41 H 1.08999 * 113.86160 * 109.04409 * 18 11 10 42 42 H 1.08999 * 113.86750 * 221.65460 * 20 19 18 43 43 H 1.09008 * 113.86516 * 89.95571 * 20 19 18 44 44 H 1.09002 * 111.42583 * 201.85370 * 23 6 5 45 45 H 1.08997 * 111.47423 * 76.92269 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5557 -1.0142 -1.4409 5 6 3.2463 -2.1820 -0.6882 6 6 3.7193 -1.7445 0.7058 7 6 4.1354 -2.9567 1.4984 8 6 3.5708 -4.1861 1.4544 9 7 4.2682 -4.9526 2.3245 10 6 4.0191 -6.3671 2.6130 11 6 5.2972 -7.1709 2.3656 12 6 5.6528 -7.2867 0.8820 13 8 5.8489 -5.9809 0.3359 14 14 7.2183 -8.2791 0.6944 15 1 7.0152 -9.6362 1.2621 16 1 7.5632 -8.3921 -0.7456 17 1 8.3241 -7.6007 1.4170 18 6 5.3473 -8.5093 3.1264 19 8 6.7156 -8.1619 3.4194 20 6 6.4798 -6.7488 3.2576 21 7 5.1841 -4.2237 2.8598 22 7 5.1316 -3.0280 2.3884 23 6 2.5568 -1.0141 1.4447 24 1 -0.3633 0.4332 0.9319 25 1 -0.3633 -1.0236 -0.0908 26 1 -0.3633 0.5904 -0.8411 27 1 2.1907 2.2612 0.8900 28 1 3.6275 1.7027 0.0005 29 1 2.1907 2.2613 -0.8899 30 1 1.7544 -1.3813 -2.0822 31 1 3.2798 -0.4356 -2.0145 32 1 4.1055 -2.5212 -1.2668 33 1 2.5393 -3.0049 -0.5834 34 1 4.5678 -1.0676 0.6049 35 1 2.7335 -4.4939 0.8457 36 1 3.7161 -6.4777 3.6542 37 1 3.2260 -6.7364 1.9627 38 1 4.8410 -7.7844 0.3516 39 1 6.0774 -5.9778 -0.6038 40 1 4.7027 -8.5416 4.0048 41 1 5.2421 -9.3849 2.4858 42 1 7.2730 -6.2279 2.7212 43 1 6.1811 -6.2435 4.1761 44 1 2.9328 -0.3696 2.2393 45 1 1.8195 -1.7209 1.8253 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273910_16762298_17831524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:25:17 Heat of formation + Delta-G solvation = 20.874674 kcal Electronic energy + Delta-G solvation = -24995.676115 eV Core-core repulsion = 21561.556475 eV Total energy + Delta-G solvation = -3434.119640 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.00074 -42.12873 -37.82423 -37.27842 -35.51017 -32.30445 -31.55821 -29.46732 -29.17511 -28.47747 -27.81118 -27.79299 -26.34114 -25.15085 -23.34090 -22.32632 -20.59088 -20.21910 -18.82240 -18.52263 -17.70578 -17.56370 -16.73933 -16.30727 -15.98715 -15.88512 -15.61520 -15.37069 -14.85005 -14.69672 -14.28575 -14.22833 -13.94769 -13.92723 -13.77906 -13.64934 -13.47524 -13.27021 -13.02063 -12.75909 -12.60261 -12.47644 -12.21909 -12.18958 -12.10206 -11.93772 -11.72122 -11.57603 -11.22903 -10.89648 -10.85406 -10.75797 -10.57859 -10.38481 -10.31833 -9.65792 0.90000 1.10186 1.45514 1.48244 1.52340 1.61317 1.86967 1.90726 1.96445 2.01293 2.35813 2.56143 2.65872 3.14260 3.28220 3.53819 3.55464 3.80865 3.93953 4.02216 4.07055 4.12803 4.15290 4.18445 4.29412 4.43352 4.46835 4.53328 4.62857 4.66163 4.69973 4.71186 4.72399 4.76149 4.77538 4.84783 4.95701 5.00240 5.14092 5.18105 5.28976 5.44107 5.48996 5.53403 5.55172 5.57981 5.84771 6.38369 7.88089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.441 4.441 2 Si 0.963 3.037 3 C -0.442 4.442 4 C -0.397 4.397 5 C -0.104 4.104 6 C 0.000 4.000 7 C -0.003 4.003 8 C -0.039 4.039 9 N -0.273 5.273 10 C 0.134 3.866 11 C -0.139 4.139 12 C -0.099 4.099 13 O -0.540 6.540 14 Si 0.964 3.036 15 H -0.254 1.254 16 H -0.273 1.273 17 H -0.250 1.250 18 C 0.049 3.951 19 O -0.373 6.373 20 C 0.056 3.944 21 N -0.082 5.082 22 N -0.269 5.269 23 C -0.385 4.385 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.180 0.820 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.382 0.618 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.708 -2.556 -3.098 6.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.549 4.549 2 Si 1.161 2.839 3 C -0.551 4.551 4 C -0.483 4.483 5 C -0.142 4.142 6 C -0.020 4.020 7 C -0.141 4.141 8 C -0.190 4.190 9 N -0.066 5.066 10 C 0.012 3.988 11 C -0.140 4.140 12 C -0.210 4.210 13 O -0.345 6.345 14 Si 0.789 3.211 15 H -0.178 1.178 16 H -0.199 1.199 17 H -0.174 1.174 18 C -0.029 4.029 19 O -0.292 6.292 20 C -0.021 4.021 21 N -0.061 5.061 22 N -0.135 5.135 23 C -0.471 4.471 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.197 0.803 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.229 0.771 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.098 0.902 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.697 -2.978 -1.469 4.969 hybrid contribution -1.340 -0.196 -1.344 1.909 sum -5.037 -3.174 -2.814 6.585 Atomic orbital electron populations 1.26005 1.20019 1.04466 1.04444 0.80585 0.67372 0.67777 0.68161 1.26013 1.06786 1.17829 1.04430 1.26469 1.05515 1.06303 1.10015 1.21703 1.00437 0.98261 0.93834 1.19918 0.98366 0.91775 0.91960 1.21730 0.96228 0.95464 1.00722 1.23095 1.02990 0.92171 1.00704 1.46898 1.21660 1.10446 1.27572 1.21989 0.97887 0.75177 1.03755 1.23938 0.96612 0.97311 0.96150 1.25616 1.10025 0.91922 0.93443 1.86500 1.93136 1.25458 1.29448 0.85388 0.77627 0.79193 0.78883 1.17768 1.19927 1.17403 1.24092 0.84724 0.95664 0.98378 1.89668 1.25921 1.21255 1.92325 1.24116 0.96162 0.83195 0.98598 1.78153 1.10205 0.97702 1.20036 1.75035 1.17874 1.10008 1.10596 1.26846 1.02476 1.07523 1.10285 0.91170 0.91139 0.91216 0.91166 0.90926 0.91182 0.90286 0.90401 0.91611 0.91965 0.89390 0.80287 0.87925 0.87334 0.90886 0.77065 0.88215 0.87784 0.87747 0.88195 0.90151 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.84 8.65 101.05 0.87 1.71 16 2 Si 0.96 -2.57 13.36 -169.99 -2.27 -4.84 16 3 C -0.44 0.59 8.65 101.05 0.87 1.47 16 4 C -0.40 0.77 5.85 38.30 0.22 1.00 16 5 C -0.10 0.12 5.20 -25.30 -0.13 -0.01 16 6 C 0.00 0.00 2.63 -89.92 -0.24 -0.24 16 7 C 0.00 -0.01 6.16 -82.77 -0.51 -0.52 16 8 C -0.04 -0.02 10.36 -17.04 -0.18 -0.20 16 9 N -0.27 -0.25 2.30 -61.26 -0.14 -0.39 16 10 C 0.13 -0.36 5.88 -4.04 -0.02 -0.38 16 11 C -0.14 0.23 0.93 -153.43 -0.14 0.09 16 12 C -0.10 0.19 2.44 37.16 0.09 0.28 16 13 O -0.54 0.33 11.28 -35.23 -0.40 -0.07 16 14 Si 0.96 0.32 23.40 -169.99 -3.98 -3.66 16 15 H -0.25 -0.25 6.66 56.52 0.38 0.13 16 16 H -0.27 -0.23 7.11 56.52 0.40 0.17 16 17 H -0.25 -0.79 6.65 56.52 0.38 -0.42 16 18 C 0.05 -0.12 7.70 37.60 0.29 0.17 16 19 O -0.37 -0.61 9.95 -35.23 -0.35 -0.97 16 20 C 0.06 0.06 6.26 37.60 0.24 0.29 16 21 N -0.08 -0.35 11.41 60.35 0.69 0.34 16 22 N -0.27 -1.52 12.41 33.29 0.41 -1.11 16 23 C -0.38 0.23 5.27 38.71 0.20 0.43 16 24 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 25 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 30 H 0.08 -0.18 8.04 -51.93 -0.42 -0.60 16 31 H 0.08 -0.13 8.04 -51.93 -0.42 -0.55 16 32 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.06 -0.13 6.81 -51.93 -0.35 -0.48 16 34 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 35 H 0.18 -0.47 7.23 -52.49 -0.38 -0.85 16 36 H 0.10 -0.41 7.96 -51.93 -0.41 -0.82 16 37 H 0.11 -0.57 8.07 -51.93 -0.42 -0.99 16 38 H 0.07 -0.32 7.96 -51.93 -0.41 -0.73 16 39 H 0.38 -1.46 8.74 45.56 0.40 -1.07 16 40 H 0.10 -0.46 7.97 -51.93 -0.41 -0.88 16 41 H 0.10 -0.39 7.03 -51.93 -0.37 -0.76 16 42 H 0.10 0.29 7.02 -51.93 -0.36 -0.07 16 43 H 0.10 0.08 7.86 -51.92 -0.41 -0.32 16 44 H 0.08 0.02 8.06 -51.93 -0.42 -0.40 16 45 H 0.08 -0.05 8.02 -51.93 -0.42 -0.46 16 LS Contribution 353.40 15.07 5.33 5.33 Total: 0.00 -8.15 353.40 -6.11 -14.27 By element: Atomic # 1 Polarization: -6.01 SS G_CDS: -6.98 Total: -12.99 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 1.57 Total: 4.09 kcal Atomic # 7 Polarization: -2.13 SS G_CDS: 0.96 Total: -1.17 kcal Atomic # 8 Polarization: -0.28 SS G_CDS: -0.75 Total: -1.03 kcal Atomic # 14 Polarization: -2.25 SS G_CDS: -6.25 Total: -8.50 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -8.15 -6.11 -14.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_16762298_17831524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.143 kcal (2) G-P(sol) polarization free energy of solvation -8.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds