Wall clock time and date at job start Mon Mar 8 2021 07:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 111.24359 * 2 1 4 4 C 1.89333 * 111.45943 * 234.86070 * 2 1 3 5 5 C 1.55156 * 101.34817 * 245.86257 * 4 2 1 6 6 C 1.53566 * 111.29034 * 331.41585 * 5 4 2 7 7 C 1.50696 * 109.47244 * 169.06226 * 6 5 4 8 8 C 1.35355 * 126.75039 * 324.66298 * 7 6 5 9 9 N 1.35320 * 106.17269 * 179.85684 * 8 7 6 10 10 C 1.46498 * 125.86400 * 180.12013 * 9 8 7 11 11 C 1.53000 * 109.47307 * 124.15035 * 10 9 8 12 12 C 1.53002 * 112.99663 * 289.35325 * 11 10 9 13 13 O 1.42897 * 109.47102 * 60.00114 * 12 11 10 14 14 Si 1.86302 * 109.46984 * 179.97438 * 12 11 10 15 15 H 1.48503 * 109.46981 * 60.00081 * 14 12 11 16 16 H 1.48499 * 109.47099 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46976 * 300.00129 * 14 12 11 18 18 C 1.54031 * 113.81952 * 157.36372 * 11 10 9 19 19 O 1.44171 * 85.52129 * 223.19517 * 18 11 10 20 20 C 1.44177 * 93.33621 * 24.19174 * 19 18 11 21 21 N 1.28712 * 108.26279 * 0.41521 * 9 8 7 22 22 N 1.28629 * 110.18200 * 359.73758 * 21 9 8 23 23 C 1.55914 * 109.51125 * 49.03489 * 6 5 4 24 24 H 1.09000 * 109.47180 * 294.93224 * 1 2 3 25 25 H 1.08997 * 109.47122 * 174.93048 * 1 2 3 26 26 H 1.08998 * 109.46780 * 54.93297 * 1 2 3 27 27 H 1.09006 * 109.46750 * 59.99796 * 3 2 1 28 28 H 1.08999 * 109.47163 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47117 * 300.00434 * 3 2 1 30 30 H 1.08995 * 111.05345 * 3.88152 * 4 2 1 31 31 H 1.09006 * 111.04964 * 127.85011 * 4 2 1 32 32 H 1.08997 * 109.12303 * 210.92752 * 5 4 2 33 33 H 1.09002 * 109.03552 * 91.84354 * 5 4 2 34 34 H 1.09007 * 109.43086 * 289.03365 * 6 5 4 35 35 H 1.07995 * 126.91412 * 359.97438 * 8 7 6 36 36 H 1.09003 * 109.47152 * 244.14608 * 10 9 8 37 37 H 1.09000 * 109.47446 * 4.14573 * 10 9 8 38 38 H 1.09005 * 109.47184 * 299.99633 * 12 11 10 39 39 H 0.96708 * 113.99787 * 180.02562 * 13 12 11 40 40 H 1.09002 * 113.86179 * 337.34761 * 18 11 10 41 41 H 1.08999 * 113.86160 * 109.04409 * 18 11 10 42 42 H 1.08999 * 113.86750 * 221.65460 * 20 19 18 43 43 H 1.09008 * 113.86516 * 89.95571 * 20 19 18 44 44 H 1.09002 * 111.42583 * 201.85370 * 23 6 5 45 45 H 1.08997 * 111.47423 * 76.92269 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5557 -1.0142 -1.4409 5 6 3.2463 -2.1820 -0.6882 6 6 3.7193 -1.7445 0.7058 7 6 4.1354 -2.9567 1.4984 8 6 3.5708 -4.1861 1.4544 9 7 4.2682 -4.9526 2.3245 10 6 4.0191 -6.3671 2.6130 11 6 5.2972 -7.1709 2.3656 12 6 5.6528 -7.2867 0.8820 13 8 5.8489 -5.9809 0.3359 14 14 7.2183 -8.2791 0.6944 15 1 7.0152 -9.6362 1.2621 16 1 7.5632 -8.3921 -0.7456 17 1 8.3241 -7.6007 1.4170 18 6 5.3473 -8.5093 3.1264 19 8 6.7156 -8.1619 3.4194 20 6 6.4798 -6.7488 3.2576 21 7 5.1841 -4.2237 2.8598 22 7 5.1316 -3.0280 2.3884 23 6 2.5568 -1.0141 1.4447 24 1 -0.3633 0.4332 0.9319 25 1 -0.3633 -1.0236 -0.0908 26 1 -0.3633 0.5904 -0.8411 27 1 2.1907 2.2612 0.8900 28 1 3.6275 1.7027 0.0005 29 1 2.1907 2.2613 -0.8899 30 1 1.7544 -1.3813 -2.0822 31 1 3.2798 -0.4356 -2.0145 32 1 4.1055 -2.5212 -1.2668 33 1 2.5393 -3.0049 -0.5834 34 1 4.5678 -1.0676 0.6049 35 1 2.7335 -4.4939 0.8457 36 1 3.7161 -6.4777 3.6542 37 1 3.2260 -6.7364 1.9627 38 1 4.8410 -7.7844 0.3516 39 1 6.0774 -5.9778 -0.6038 40 1 4.7027 -8.5416 4.0048 41 1 5.2421 -9.3849 2.4858 42 1 7.2730 -6.2279 2.7212 43 1 6.1811 -6.2435 4.1761 44 1 2.9328 -0.3696 2.2393 45 1 1.8195 -1.7209 1.8253 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273910_16762298_17831524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:25:16 Heat of formation + Delta-G solvation = 22.780973 kcal Electronic energy + Delta-G solvation = -24995.593452 eV Core-core repulsion = 21561.556475 eV Total energy + Delta-G solvation = -3434.036977 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.06047 -42.07485 -37.73974 -37.22463 -35.48167 -32.29579 -31.55398 -29.38596 -29.02087 -28.31786 -27.74649 -27.68773 -26.24546 -25.09542 -23.31944 -22.35242 -20.54523 -20.11869 -18.72066 -18.47022 -17.65559 -17.50070 -16.72559 -16.34342 -15.95819 -15.80420 -15.56852 -15.28931 -14.81506 -14.59804 -14.16606 -14.10878 -13.79829 -13.77381 -13.66852 -13.51504 -13.35481 -13.12444 -12.98284 -12.65214 -12.58284 -12.40855 -12.26977 -12.16125 -12.08201 -11.93083 -11.75181 -11.56553 -11.20531 -10.90243 -10.74141 -10.70618 -10.51026 -10.25918 -10.21895 -9.68845 0.87893 1.13600 1.39129 1.41516 1.58540 1.69722 1.89763 1.96313 2.06856 2.12357 2.48121 2.69984 2.78871 3.30787 3.44228 3.62178 3.72629 3.99578 4.09377 4.18661 4.23318 4.29024 4.34361 4.38520 4.44772 4.49363 4.55990 4.58896 4.70799 4.73810 4.79051 4.84462 4.86492 4.91229 4.91959 4.93683 4.99137 5.03857 5.21385 5.31851 5.38562 5.50157 5.57629 5.63549 5.67376 5.70830 5.89293 6.66604 7.76974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.040 2.960 3 C -0.463 4.463 4 C -0.403 4.403 5 C -0.100 4.100 6 C -0.002 4.002 7 C -0.022 4.022 8 C -0.027 4.027 9 N -0.264 5.264 10 C 0.125 3.875 11 C -0.130 4.130 12 C -0.080 4.080 13 O -0.557 6.557 14 Si 0.972 3.028 15 H -0.259 1.259 16 H -0.280 1.280 17 H -0.306 1.306 18 C 0.051 3.949 19 O -0.406 6.406 20 C 0.048 3.952 21 N -0.114 5.114 22 N -0.321 5.321 23 C -0.400 4.400 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.218 0.782 36 H 0.119 0.881 37 H 0.151 0.849 38 H 0.118 0.882 39 H 0.395 0.605 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.074 -3.819 -4.359 10.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.233 2.767 3 C -0.570 4.570 4 C -0.489 4.489 5 C -0.138 4.138 6 C -0.022 4.022 7 C -0.161 4.161 8 C -0.178 4.178 9 N -0.057 5.057 10 C 0.005 3.995 11 C -0.131 4.131 12 C -0.192 4.192 13 O -0.365 6.365 14 Si 0.804 3.196 15 H -0.183 1.183 16 H -0.207 1.207 17 H -0.233 1.233 18 C -0.025 4.025 19 O -0.326 6.326 20 C -0.029 4.029 21 N -0.093 5.093 22 N -0.186 5.186 23 C -0.484 4.484 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.137 0.863 37 H 0.169 0.831 38 H 0.136 0.864 39 H 0.245 0.755 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.091 0.909 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.033 -4.270 -2.724 8.667 hybrid contribution -0.166 0.169 -0.916 0.946 sum -7.200 -4.101 -3.639 9.050 Atomic orbital electron populations 1.26099 1.20281 1.04970 1.04430 0.79439 0.66150 0.65299 0.65808 1.26278 1.06500 1.19783 1.04422 1.26551 1.05757 1.06178 1.10368 1.21663 1.00592 0.99109 0.92441 1.19997 0.98120 0.91077 0.93055 1.22172 0.96072 0.97141 1.00708 1.23611 1.03048 0.91166 0.99984 1.47196 1.20468 1.11446 1.26615 1.22423 0.98052 0.72990 1.06017 1.23833 0.95827 0.97758 0.95666 1.25367 1.08842 0.91089 0.93931 1.86493 1.93137 1.26059 1.30828 0.85349 0.78109 0.78867 0.77228 1.18321 1.20711 1.23346 1.24419 0.82908 0.95648 0.99549 1.89635 1.28881 1.21479 1.92554 1.23988 0.96874 0.82870 0.99123 1.78084 1.11929 0.97890 1.21370 1.74977 1.19970 1.11201 1.12492 1.27067 1.02329 1.07991 1.11002 0.91446 0.90424 0.90961 0.91522 0.91733 0.90848 0.89024 0.90746 0.92461 0.90089 0.91344 0.76511 0.86288 0.83127 0.86386 0.75548 0.85607 0.86053 0.90926 0.88592 0.91856 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.44 8.65 113.37 0.98 3.42 16 2 Si 1.04 -6.23 13.36 68.60 0.92 -5.32 16 3 C -0.46 1.01 8.65 113.37 0.98 2.00 16 4 C -0.40 2.11 5.85 72.72 0.43 2.54 16 5 C -0.10 0.33 5.20 31.52 0.16 0.50 16 6 C 0.00 0.00 2.63 -10.34 -0.03 -0.03 16 7 C -0.02 -0.13 6.16 41.60 0.26 0.13 16 8 C -0.03 0.02 10.36 83.49 0.86 0.88 16 9 N -0.26 -0.22 2.30 -347.73 -0.80 -1.02 16 10 C 0.13 -1.01 5.88 86.38 0.51 -0.50 16 11 C -0.13 0.57 0.93 -51.49 -0.05 0.52 16 12 C -0.08 0.42 2.44 71.98 0.18 0.59 16 13 O -0.56 0.99 11.28 -148.98 -1.68 -0.69 16 14 Si 0.97 1.87 23.40 68.60 1.61 3.47 16 15 H -0.26 -0.65 6.66 99.48 0.66 0.02 16 16 H -0.28 -0.76 7.11 99.48 0.71 -0.05 16 17 H -0.31 -3.43 6.65 99.48 0.66 -2.76 16 18 C 0.05 -0.33 7.70 72.27 0.56 0.23 16 19 O -0.41 -1.87 9.95 -148.98 -1.48 -3.35 16 20 C 0.05 0.19 6.26 72.27 0.45 0.65 16 21 N -0.11 -1.14 11.41 37.02 0.42 -0.72 16 22 N -0.32 -4.30 12.41 -48.60 -0.60 -4.91 16 23 C -0.40 0.33 5.27 72.99 0.38 0.71 16 24 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 25 H 0.08 -0.50 7.96 -2.39 -0.02 -0.52 16 26 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 27 H 0.07 -0.10 7.96 -2.38 -0.02 -0.12 16 28 H 0.06 -0.04 7.96 -2.39 -0.02 -0.06 16 29 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 30 H 0.09 -0.66 8.04 -2.39 -0.02 -0.68 16 31 H 0.07 -0.31 8.04 -2.38 -0.02 -0.33 16 32 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.08 -0.57 6.81 -2.39 -0.02 -0.59 16 34 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 35 H 0.22 -2.05 7.23 -2.91 -0.02 -2.07 16 36 H 0.12 -1.28 7.96 -2.39 -0.02 -1.30 16 37 H 0.15 -2.42 8.07 -2.39 -0.02 -2.43 16 38 H 0.12 -1.55 7.96 -2.38 -0.02 -1.57 16 39 H 0.39 -3.28 8.74 -74.05 -0.65 -3.93 16 40 H 0.13 -1.49 7.97 -2.39 -0.02 -1.50 16 41 H 0.12 -1.21 7.03 -2.39 -0.02 -1.23 16 42 H 0.07 0.72 7.02 -2.39 -0.02 0.70 16 43 H 0.10 0.38 7.86 -2.38 -0.02 0.36 16 44 H 0.06 0.15 8.06 -2.39 -0.02 0.13 16 45 H 0.08 -0.15 8.02 -2.39 -0.02 -0.17 16 Total: 0.00 -24.77 353.40 5.04 -19.73 By element: Atomic # 1 Polarization: -19.84 SS G_CDS: 0.99 Total: -18.85 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 5.67 Total: 11.65 kcal Atomic # 7 Polarization: -5.67 SS G_CDS: -0.98 Total: -6.65 kcal Atomic # 8 Polarization: -0.88 SS G_CDS: -3.16 Total: -4.04 kcal Atomic # 14 Polarization: -4.36 SS G_CDS: 2.52 Total: -1.84 kcal Total: -24.77 5.04 -19.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_16762298_17831524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.515 kcal (2) G-P(sol) polarization free energy of solvation -24.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds