Wall clock time and date at job start Mon Mar 8 2021 11:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 C 1.86293 * 109.47364 * 239.99588 * 2 1 3 6 6 N 1.46505 * 109.46974 * 60.00146 * 5 2 1 7 7 C 1.35203 * 125.75073 * 90.00179 * 6 5 2 8 8 C 1.36492 * 106.04479 * 179.97438 * 7 6 5 9 9 C 1.48453 * 126.90659 * 180.02562 * 8 7 6 10 10 C 1.39286 * 120.11716 * 5.00388 * 9 8 7 11 11 C 1.38047 * 119.87757 * 179.97438 * 10 9 8 12 12 C 1.38289 * 120.12025 * 359.97310 * 11 10 9 13 13 C 1.38343 * 120.23761 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93904 * 180.02562 * 13 12 11 15 15 O 1.42903 * 109.46766 * 244.99737 * 14 13 12 16 16 Si 1.86302 * 109.47360 * 4.99454 * 14 13 12 17 17 H 1.48496 * 109.46744 * 60.00243 * 16 14 13 18 18 H 1.48499 * 109.46917 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47032 * 300.00355 * 16 14 13 20 20 C 1.38003 * 120.12087 * 359.78116 * 13 12 11 21 21 N 1.34498 * 106.18522 * 0.02562 * 8 7 6 22 22 N 1.28610 * 108.78902 * 359.73243 * 21 8 7 23 23 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 24 24 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 26 26 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 27 27 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 29 29 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 30 30 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 32 32 H 1.09002 * 109.47236 * 180.02562 * 5 2 1 33 33 H 1.08998 * 109.47688 * 299.99834 * 5 2 1 34 34 H 1.08001 * 126.98449 * 359.97438 * 7 6 5 35 35 H 1.08007 * 120.06336 * 359.95409 * 10 9 8 36 36 H 1.08003 * 119.93907 * 180.02562 * 11 10 9 37 37 H 1.07996 * 119.88441 * 180.02562 * 12 11 10 38 38 H 1.08995 * 109.47236 * 125.00123 * 14 13 12 39 39 H 0.96704 * 114.00152 * 179.97438 * 15 14 13 40 40 H 1.07995 * 120.06562 * 180.25443 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 6 2.4841 -0.8783 -1.5210 6 7 1.9957 -0.1877 -2.7172 7 6 2.6284 0.8181 -3.3623 8 6 1.8246 1.1577 -4.4118 9 6 2.0788 2.2131 -5.4244 10 6 3.2864 2.9073 -5.4223 11 6 3.5178 3.8874 -6.3665 12 6 2.5536 4.1801 -7.3136 13 6 1.3525 3.4937 -7.3202 14 6 0.3066 3.8178 -8.3557 15 8 -0.8487 4.3596 -7.7124 16 14 0.9897 5.0652 -9.5590 17 1 2.1903 4.5022 -10.2274 18 1 -0.0411 5.3850 -10.5790 19 1 1.3643 6.3033 -8.8294 20 6 1.1123 2.5093 -6.3833 21 7 0.7559 0.3439 -4.3442 22 7 0.8952 -0.4398 -3.3340 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.1207 2.2704 0.8899 27 1 3.5740 1.7565 0.0005 28 1 2.1207 2.2703 -0.8901 29 1 2.1207 -1.9058 1.5213 30 1 3.5740 -0.8777 1.5215 31 1 2.1207 -0.3642 2.4111 32 1 3.5741 -0.8787 -1.5207 33 1 2.1208 -1.9060 -1.5210 34 1 3.5771 1.2627 -3.1003 35 1 4.0402 2.6794 -4.6832 36 1 4.4540 4.4259 -6.3661 37 1 2.7388 4.9473 -8.0508 38 1 0.0317 2.9091 -8.8911 39 1 -1.5643 4.5922 -8.3198 40 1 0.1760 1.9711 -6.3918 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_274090_12937210_14928536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:58:27 Heat of formation + Delta-G solvation = 48.026571 kcal Electronic energy + Delta-G solvation = -20563.104678 eV Core-core repulsion = 17503.467581 eV Total energy + Delta-G solvation = -3059.637097 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 291.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.11886 -40.33284 -37.56306 -35.64563 -33.68839 -32.28967 -30.58569 -29.87910 -28.70749 -28.56312 -28.36811 -26.67548 -24.73557 -23.38159 -21.98848 -21.38457 -18.56862 -18.38809 -17.59128 -17.48825 -16.65756 -16.40129 -15.72696 -15.22456 -14.94237 -14.74527 -14.65357 -14.42467 -14.38867 -14.29787 -14.07284 -13.83207 -13.70976 -13.51025 -13.39396 -13.26796 -13.21108 -12.68754 -12.34374 -12.27134 -12.14867 -11.91327 -11.76306 -11.55366 -11.15906 -11.05964 -10.84581 -10.48476 -10.29702 -9.72148 -9.15339 -0.00730 0.45223 0.66626 1.15728 1.18780 1.28533 1.47004 1.52955 1.53382 1.77646 1.79325 1.93252 2.25185 2.89962 3.23749 3.46833 3.55952 3.73243 3.91278 4.03250 4.14528 4.17618 4.23746 4.36980 4.43238 4.47796 4.49360 4.52509 4.54095 4.60700 4.66731 4.68763 4.78389 4.90283 5.06703 5.17459 5.25006 5.32657 5.47366 5.49825 5.57411 5.62822 5.65012 6.01091 6.64802 7.61277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.026 2.974 3 C -0.453 4.453 4 C -0.447 4.447 5 C -0.201 4.201 6 N -0.262 5.262 7 C -0.045 4.045 8 C 0.018 3.982 9 C -0.005 4.005 10 C -0.101 4.101 11 C -0.111 4.111 12 C -0.119 4.119 13 C -0.074 4.074 14 C -0.083 4.083 15 O -0.543 6.543 16 Si 0.948 3.052 17 H -0.250 1.250 18 H -0.257 1.257 19 H -0.248 1.248 20 C -0.061 4.061 21 N -0.258 5.258 22 N -0.082 5.082 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.192 0.808 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.380 0.620 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 0.284 2.520 4.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.220 2.780 3 C -0.561 4.561 4 C -0.556 4.556 5 C -0.366 4.366 6 N -0.053 5.053 7 C -0.196 4.196 8 C -0.119 4.119 9 C -0.007 4.007 10 C -0.121 4.121 11 C -0.129 4.129 12 C -0.137 4.137 13 C -0.074 4.074 14 C -0.193 4.193 15 O -0.349 6.349 16 Si 0.771 3.229 17 H -0.173 1.173 18 H -0.181 1.181 19 H -0.171 1.171 20 C -0.080 4.080 21 N -0.124 5.124 22 N -0.062 5.062 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.209 0.791 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.227 0.773 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.631 -0.183 2.423 4.369 hybrid contribution 0.622 0.196 -0.113 0.662 sum 4.253 0.013 2.311 4.840 Atomic orbital electron populations 1.26104 1.19758 1.05138 1.04859 0.79300 0.68121 0.66965 0.63633 1.26155 1.06394 1.18342 1.05228 1.26053 1.06517 1.08354 1.14672 1.27458 1.06083 1.06190 0.96838 1.46843 1.14502 1.23425 1.20534 1.23475 1.02623 0.96440 0.97076 1.20317 0.93645 1.00266 0.97676 1.17661 0.94756 0.94264 0.94046 1.21094 0.95950 0.95983 0.99047 1.20945 0.99339 0.97768 0.94810 1.21077 0.93964 0.99284 0.99402 1.19191 0.94037 0.96903 0.97290 1.24757 0.89632 1.04624 1.00283 1.86526 1.26347 1.84688 1.37326 0.85732 0.80599 0.79327 0.77259 1.17315 1.18148 1.17121 1.21042 0.98721 0.95868 0.92393 1.75299 1.20966 1.04461 1.11684 1.78286 1.03511 1.20469 1.03919 0.91029 0.90719 0.90725 0.90333 0.90838 0.91047 0.90669 0.90782 0.90246 0.86876 0.86354 0.79094 0.85576 0.85100 0.86095 0.90488 0.77282 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.40 8.65 101.05 0.87 1.28 16 2 Si 1.03 -3.99 12.78 -169.99 -2.17 -6.16 16 3 C -0.45 1.26 8.65 101.05 0.87 2.14 16 4 C -0.45 1.74 8.65 101.05 0.87 2.61 16 5 C -0.20 0.60 5.49 59.85 0.33 0.93 16 6 N -0.26 -0.26 2.71 -9.14 -0.02 -0.29 16 7 C -0.04 -0.03 10.87 -16.70 -0.18 -0.21 16 8 C 0.02 0.07 6.98 -83.12 -0.58 -0.51 16 9 C -0.01 -0.02 5.88 -104.89 -0.62 -0.63 16 10 C -0.10 -0.07 9.58 -39.26 -0.38 -0.45 16 11 C -0.11 -0.06 10.03 -39.63 -0.40 -0.45 16 12 C -0.12 -0.19 8.66 -39.52 -0.34 -0.53 16 13 C -0.07 -0.19 5.38 -104.67 -0.56 -0.76 16 14 C -0.08 -0.07 2.79 36.01 0.10 0.03 16 15 O -0.54 -0.79 12.81 -35.23 -0.45 -1.24 16 16 Si 0.95 -0.04 25.13 -169.99 -4.27 -4.31 16 17 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 18 H -0.26 -0.02 7.11 56.52 0.40 0.38 16 19 H -0.25 -0.28 7.04 56.52 0.40 0.12 16 20 C -0.06 -0.23 9.34 -39.26 -0.37 -0.59 16 21 N -0.26 -1.53 12.17 33.06 0.40 -1.12 16 22 N -0.08 -0.38 13.14 60.35 0.79 0.41 16 23 H 0.07 0.10 7.96 -51.93 -0.41 -0.32 16 24 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 26 H 0.08 -0.20 7.96 -51.93 -0.41 -0.61 16 27 H 0.07 -0.28 7.96 -51.93 -0.41 -0.69 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.29 7.96 -51.93 -0.41 -0.70 16 30 H 0.07 -0.32 7.96 -51.93 -0.41 -0.74 16 31 H 0.08 -0.28 7.96 -51.93 -0.41 -0.69 16 32 H 0.11 -0.62 7.96 -51.93 -0.41 -1.03 16 33 H 0.12 -0.41 7.96 -51.93 -0.41 -0.82 16 34 H 0.19 -0.64 7.43 -52.49 -0.39 -1.03 16 35 H 0.13 -0.27 7.14 -52.48 -0.37 -0.64 16 36 H 0.13 -0.26 8.06 -52.48 -0.42 -0.68 16 37 H 0.12 0.02 4.85 -52.49 -0.25 -0.23 16 38 H 0.08 -0.05 7.96 -51.93 -0.41 -0.47 16 39 H 0.38 -1.18 8.74 45.56 0.40 -0.78 16 40 H 0.14 0.59 7.91 -52.49 -0.42 0.18 16 LS Contribution 340.66 15.07 5.13 5.13 Total: 0.00 -8.51 340.66 -6.18 -14.69 By element: Atomic # 1 Polarization: -4.75 SS G_CDS: -5.22 Total: -9.97 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -0.37 Total: 2.84 kcal Atomic # 7 Polarization: -2.17 SS G_CDS: 1.17 Total: -1.00 kcal Atomic # 8 Polarization: -0.79 SS G_CDS: -0.45 Total: -1.24 kcal Atomic # 14 Polarization: -4.03 SS G_CDS: -6.44 Total: -10.47 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -8.51 -6.18 -14.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_274090_12937210_14928536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.721 kcal (2) G-P(sol) polarization free energy of solvation -8.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds