Wall clock time and date at job start Mon Mar 8 2021 11:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 C 1.86293 * 109.47364 * 239.99588 * 2 1 3 6 6 N 1.46505 * 109.46974 * 60.00146 * 5 2 1 7 7 C 1.35203 * 125.75073 * 90.00179 * 6 5 2 8 8 C 1.36492 * 106.04479 * 179.97438 * 7 6 5 9 9 C 1.48453 * 126.90659 * 180.02562 * 8 7 6 10 10 C 1.39286 * 120.11716 * 5.00388 * 9 8 7 11 11 C 1.38047 * 119.87757 * 179.97438 * 10 9 8 12 12 C 1.38289 * 120.12025 * 359.97310 * 11 10 9 13 13 C 1.38343 * 120.23761 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93904 * 180.02562 * 13 12 11 15 15 O 1.42903 * 109.46766 * 244.99737 * 14 13 12 16 16 Si 1.86302 * 109.47360 * 4.99454 * 14 13 12 17 17 H 1.48496 * 109.46744 * 60.00243 * 16 14 13 18 18 H 1.48499 * 109.46917 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47032 * 300.00355 * 16 14 13 20 20 C 1.38003 * 120.12087 * 359.78116 * 13 12 11 21 21 N 1.34498 * 106.18522 * 0.02562 * 8 7 6 22 22 N 1.28610 * 108.78902 * 359.73243 * 21 8 7 23 23 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 24 24 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 26 26 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 27 27 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 29 29 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 30 30 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 32 32 H 1.09002 * 109.47236 * 180.02562 * 5 2 1 33 33 H 1.08998 * 109.47688 * 299.99834 * 5 2 1 34 34 H 1.08001 * 126.98449 * 359.97438 * 7 6 5 35 35 H 1.08007 * 120.06336 * 359.95409 * 10 9 8 36 36 H 1.08003 * 119.93907 * 180.02562 * 11 10 9 37 37 H 1.07996 * 119.88441 * 180.02562 * 12 11 10 38 38 H 1.08995 * 109.47236 * 125.00123 * 14 13 12 39 39 H 0.96704 * 114.00152 * 179.97438 * 15 14 13 40 40 H 1.07995 * 120.06562 * 180.25443 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 6 2.4841 -0.8783 -1.5210 6 7 1.9957 -0.1877 -2.7172 7 6 2.6284 0.8181 -3.3623 8 6 1.8246 1.1577 -4.4118 9 6 2.0788 2.2131 -5.4244 10 6 3.2864 2.9073 -5.4223 11 6 3.5178 3.8874 -6.3665 12 6 2.5536 4.1801 -7.3136 13 6 1.3525 3.4937 -7.3202 14 6 0.3066 3.8178 -8.3557 15 8 -0.8487 4.3596 -7.7124 16 14 0.9897 5.0652 -9.5590 17 1 2.1903 4.5022 -10.2274 18 1 -0.0411 5.3850 -10.5790 19 1 1.3643 6.3033 -8.8294 20 6 1.1123 2.5093 -6.3833 21 7 0.7559 0.3439 -4.3442 22 7 0.8952 -0.4398 -3.3340 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.1207 2.2704 0.8899 27 1 3.5740 1.7565 0.0005 28 1 2.1207 2.2703 -0.8901 29 1 2.1207 -1.9058 1.5213 30 1 3.5740 -0.8777 1.5215 31 1 2.1207 -0.3642 2.4111 32 1 3.5741 -0.8787 -1.5207 33 1 2.1208 -1.9060 -1.5210 34 1 3.5771 1.2627 -3.1003 35 1 4.0402 2.6794 -4.6832 36 1 4.4540 4.4259 -6.3661 37 1 2.7388 4.9473 -8.0508 38 1 0.0317 2.9091 -8.8911 39 1 -1.5643 4.5922 -8.3198 40 1 0.1760 1.9711 -6.3918 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_274090_12937210_14928536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:58:21 Heat of formation + Delta-G solvation = 51.645137 kcal Electronic energy + Delta-G solvation = -20562.947765 eV Core-core repulsion = 17503.467581 eV Total energy + Delta-G solvation = -3059.480184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 291.127 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -44.23555 -40.39970 -37.62770 -35.70025 -33.78804 -32.35183 -30.66641 -29.66639 -28.50074 -28.41107 -28.21310 -26.72597 -24.85327 -23.43887 -22.06187 -21.47498 -18.58852 -18.44233 -17.63439 -17.54829 -16.69359 -16.46101 -15.77369 -15.26245 -14.94912 -14.66648 -14.52941 -14.36598 -14.31287 -14.18770 -13.89903 -13.75953 -13.60327 -13.31452 -13.23925 -13.19039 -13.05391 -12.78834 -12.35122 -12.33386 -12.17260 -11.99422 -11.80207 -11.62678 -10.94770 -10.90125 -10.86810 -10.43660 -10.33430 -9.80105 -9.26172 -0.07906 0.36374 0.61889 1.16005 1.29410 1.47521 1.51853 1.52807 1.62881 1.77948 1.90224 2.03096 2.48152 2.81726 3.18539 3.46793 3.63917 3.83067 3.92542 4.04415 4.12087 4.12982 4.34714 4.41571 4.53730 4.58143 4.65172 4.69527 4.76613 4.78013 4.80399 4.82327 4.86244 4.87780 5.00743 5.07526 5.44327 5.47496 5.50304 5.54714 5.56870 5.60867 5.67279 5.95161 6.79953 7.45572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.482 4.482 2 Si 1.104 2.896 3 C -0.466 4.466 4 C -0.450 4.450 5 C -0.222 4.222 6 N -0.253 5.253 7 C -0.028 4.028 8 C -0.006 4.006 9 C -0.020 4.020 10 C -0.098 4.098 11 C -0.108 4.108 12 C -0.132 4.132 13 C -0.090 4.090 14 C -0.094 4.094 15 O -0.565 6.565 16 Si 0.991 3.009 17 H -0.253 1.253 18 H -0.258 1.258 19 H -0.263 1.263 20 C -0.088 4.088 21 N -0.305 5.305 22 N -0.119 5.119 23 H 0.041 0.959 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.151 0.849 33 H 0.123 0.877 34 H 0.237 0.763 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.396 0.604 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.204 0.648 3.401 7.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.585 4.585 2 Si 1.292 2.708 3 C -0.573 4.573 4 C -0.559 4.559 5 C -0.384 4.384 6 N -0.044 5.044 7 C -0.181 4.181 8 C -0.145 4.145 9 C -0.022 4.022 10 C -0.117 4.117 11 C -0.126 4.126 12 C -0.150 4.150 13 C -0.090 4.090 14 C -0.203 4.203 15 O -0.374 6.374 16 Si 0.814 3.186 17 H -0.177 1.177 18 H -0.182 1.182 19 H -0.187 1.187 20 C -0.107 4.107 21 N -0.170 5.170 22 N -0.098 5.098 23 H 0.060 0.940 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.169 0.831 33 H 0.142 0.858 34 H 0.254 0.746 35 H 0.178 0.822 36 H 0.180 0.820 37 H 0.151 0.849 38 H 0.102 0.898 39 H 0.247 0.753 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.574 0.158 3.298 7.356 hybrid contribution -0.351 0.077 -0.316 0.478 sum 6.223 0.235 2.982 6.905 Atomic orbital electron populations 1.26575 1.24405 1.04279 1.03290 0.78155 0.63812 0.65839 0.62985 1.26306 1.07846 1.18814 1.04349 1.26067 1.07529 1.08314 1.14021 1.27955 1.08588 1.06429 0.95447 1.47177 1.13418 1.23127 1.20655 1.24101 1.03187 0.95374 0.95400 1.20672 0.93965 1.00688 0.99135 1.17889 0.95646 0.94718 0.93905 1.21452 0.95495 0.95154 0.99597 1.21368 1.00041 0.97358 0.93811 1.21347 0.93893 0.99526 1.00261 1.19461 0.95144 0.96853 0.97518 1.25002 0.89351 1.05721 1.00214 1.86477 1.27277 1.84837 1.38832 0.85113 0.79933 0.77540 0.75990 1.17682 1.18204 1.18735 1.21007 0.98598 0.97027 0.94115 1.75227 1.22916 1.05879 1.12955 1.78200 1.05479 1.21452 1.04667 0.93973 0.91258 0.90843 0.90668 0.88831 0.92545 0.90503 0.89284 0.90460 0.83085 0.85827 0.74649 0.82166 0.82022 0.84926 0.89807 0.75346 0.87036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.12 8.65 113.37 0.98 0.87 16 2 Si 1.10 -9.49 12.78 68.60 0.88 -8.61 16 3 C -0.47 3.20 8.65 113.37 0.98 4.19 16 4 C -0.45 4.38 8.65 113.37 0.98 5.36 16 5 C -0.22 1.66 5.49 127.77 0.70 2.36 16 6 N -0.25 -0.50 2.71 -182.82 -0.50 -0.99 16 7 C -0.03 -0.01 10.87 83.77 0.91 0.90 16 8 C -0.01 -0.05 6.98 41.05 0.29 0.23 16 9 C -0.02 -0.14 5.88 -20.04 -0.12 -0.26 16 10 C -0.10 -0.03 9.58 22.48 0.22 0.18 16 11 C -0.11 0.03 10.03 22.24 0.22 0.25 16 12 C -0.13 -0.44 8.66 22.31 0.19 -0.25 16 13 C -0.09 -0.63 5.38 -19.89 -0.11 -0.73 16 14 C -0.09 -0.31 2.79 71.24 0.20 -0.11 16 15 O -0.57 -2.78 12.81 -148.98 -1.91 -4.69 16 16 Si 0.99 0.18 25.13 68.60 1.72 1.91 16 17 H -0.25 -0.13 7.11 99.48 0.71 0.57 16 18 H -0.26 0.01 7.11 99.48 0.71 0.72 16 19 H -0.26 -0.65 7.04 99.48 0.70 0.05 16 20 C -0.09 -0.91 9.34 22.48 0.21 -0.70 16 21 N -0.30 -4.52 12.17 -49.31 -0.60 -5.12 16 22 N -0.12 -1.35 13.14 37.02 0.49 -0.86 16 23 H 0.04 0.26 7.96 -2.39 -0.02 0.24 16 24 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 25 H 0.07 -0.03 7.96 -2.39 -0.02 -0.05 16 26 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 27 H 0.09 -1.00 7.96 -2.39 -0.02 -1.02 16 28 H 0.06 -0.18 7.96 -2.38 -0.02 -0.20 16 29 H 0.08 -0.72 7.96 -2.39 -0.02 -0.74 16 30 H 0.09 -1.07 7.96 -2.39 -0.02 -1.09 16 31 H 0.08 -0.66 7.96 -2.39 -0.02 -0.68 16 32 H 0.15 -2.24 7.96 -2.39 -0.02 -2.25 16 33 H 0.12 -0.98 7.96 -2.39 -0.02 -1.00 16 34 H 0.24 -2.43 7.43 -2.91 -0.02 -2.45 16 35 H 0.16 -1.19 7.14 -2.91 -0.02 -1.21 16 36 H 0.16 -1.11 8.06 -2.91 -0.02 -1.13 16 37 H 0.13 0.02 4.85 -2.91 -0.01 0.00 16 38 H 0.08 0.06 7.96 -2.39 -0.02 0.04 16 39 H 0.40 -1.82 8.74 -74.05 -0.65 -2.47 16 40 H 0.11 1.53 7.91 -2.91 -0.02 1.50 16 Total: 0.00 -24.57 340.66 6.88 -17.70 By element: Atomic # 1 Polarization: -12.74 SS G_CDS: 1.14 Total: -11.61 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.66 Total: 12.29 kcal Atomic # 7 Polarization: -6.37 SS G_CDS: -0.61 Total: -6.98 kcal Atomic # 8 Polarization: -2.78 SS G_CDS: -1.91 Total: -4.69 kcal Atomic # 14 Polarization: -9.31 SS G_CDS: 2.60 Total: -6.71 kcal Total: -24.57 6.88 -17.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_274090_12937210_14928536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.342 kcal (2) G-P(sol) polarization free energy of solvation -24.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds