Wall clock time and date at job start Mon Mar 8 2021 11:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50705 * 109.47171 * 240.00020 * 2 1 3 5 5 C 1.38007 * 119.93641 * 300.00372 * 4 2 1 6 6 C 1.39332 * 119.87457 * 179.97438 * 5 4 2 7 7 C 1.48452 * 120.11665 * 179.97438 * 6 5 4 8 8 C 1.36481 * 126.90694 * 179.71264 * 7 6 5 9 9 N 1.35220 * 106.04555 * 179.91120 * 8 7 6 10 10 C 1.46493 * 125.75113 * 180.12788 * 9 8 7 11 11 C 1.53002 * 109.47117 * 125.29486 * 10 9 8 12 12 H 1.09000 * 109.47015 * 305.00122 * 11 10 9 13 13 C 1.52993 * 109.46897 * 65.00022 * 11 10 9 14 14 C 1.52998 * 109.47152 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46923 * 299.99462 * 14 13 11 16 16 H 1.09000 * 109.47596 * 300.00125 * 15 14 13 17 17 O 1.42902 * 109.47236 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.46874 * 60.00561 * 15 14 13 19 19 C 1.52997 * 109.47233 * 184.99910 * 11 10 9 20 20 N 1.28653 * 108.49398 * 0.36010 * 9 8 7 21 21 N 1.28609 * 110.48547 * 359.77009 * 20 9 8 22 22 C 1.39287 * 119.76992 * 0.02562 * 6 5 4 23 23 C 1.38050 * 119.87629 * 359.97438 * 22 6 5 24 24 C 1.38293 * 120.12106 * 359.74563 * 23 22 6 25 25 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 26 26 H 1.09004 * 109.47533 * 120.00158 * 2 1 3 27 27 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 28 28 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 29 29 H 1.07998 * 120.06137 * 359.97438 * 5 4 2 30 30 H 1.08001 * 126.97695 * 0.02974 * 8 7 6 31 31 H 1.08999 * 109.47562 * 245.29976 * 10 9 8 32 32 H 1.09001 * 109.47390 * 5.29787 * 10 9 8 33 33 H 1.09006 * 109.47110 * 300.00095 * 13 11 10 34 34 H 1.09000 * 109.47500 * 59.99755 * 13 11 10 35 35 H 1.09002 * 109.47093 * 179.97438 * 14 13 11 36 36 H 1.08991 * 109.47322 * 60.00047 * 14 13 11 37 37 H 0.96698 * 113.99923 * 60.00564 * 17 15 14 38 38 H 1.08997 * 109.47110 * 179.97438 * 18 15 14 39 39 H 1.09000 * 109.47364 * 59.99423 * 18 15 14 40 40 H 1.09000 * 109.47294 * 300.00042 * 19 11 10 41 41 H 1.09002 * 109.47224 * 60.00218 * 19 11 10 42 42 H 1.07996 * 120.06572 * 180.02562 * 22 6 5 43 43 H 1.08003 * 119.94299 * 180.02562 * 23 22 6 44 44 H 1.07999 * 119.88422 * 180.27824 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5970 -2.0317 -1.4476 6 6 2.0618 -2.6871 -2.5860 7 6 1.7060 -4.1084 -2.8246 8 6 2.0776 -4.8789 -3.8881 9 7 1.5257 -6.0956 -3.6791 10 6 1.6550 -7.2572 -4.5622 11 6 2.1927 -8.4470 -3.7646 12 1 3.1261 -8.1656 -3.2772 13 6 1.1673 -8.8560 -2.7053 14 6 1.7052 -10.0454 -1.9073 15 6 1.9584 -11.2213 -2.8528 16 1 1.0250 -11.5031 -3.3402 17 8 2.4613 -12.3320 -2.1075 18 6 2.9838 -10.8123 -3.9121 19 6 2.4455 -9.6227 -4.7104 20 7 0.8640 -6.0596 -2.5763 21 7 0.9477 -4.8941 -2.0391 22 6 2.8622 -2.0043 -3.4988 23 6 3.1905 -0.6828 -3.2717 24 6 2.7219 -0.0353 -2.1432 25 1 -0.3932 0.4418 0.7651 26 1 1.7924 -0.5139 0.8900 27 1 1.5615 2.4679 -1.2085 28 1 1.5881 2.4585 1.2242 29 1 0.9764 -2.5566 -0.7365 30 1 2.6899 -4.5785 -4.7255 31 1 0.6788 -7.5090 -4.9767 32 1 2.3444 -7.0222 -5.3732 33 1 0.9872 -8.0183 -2.0315 34 1 0.2338 -9.1373 -3.1927 35 1 0.9749 -10.3364 -1.1523 36 1 2.6385 -9.7636 -1.4198 37 1 1.8622 -12.6456 -1.4163 38 1 3.1645 -11.6502 -4.5854 39 1 3.9172 -10.5305 -3.4246 40 1 1.5120 -9.9041 -5.1979 41 1 3.1760 -9.3313 -5.4651 42 1 3.2247 -2.5076 -4.3829 43 1 3.8108 -0.1522 -3.9790 44 1 2.9774 0.9999 -1.9717 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_274090_16737262_14928536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:15:18 Heat of formation + Delta-G solvation = 35.256562 kcal Electronic energy + Delta-G solvation = -25686.178609 eV Core-core repulsion = 21992.673296 eV Total energy + Delta-G solvation = -3693.505313 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.29753 -40.44504 -40.15429 -37.80969 -37.37732 -35.32628 -33.83026 -32.37159 -31.85778 -31.62687 -30.41142 -27.36233 -26.69964 -24.89622 -23.80524 -23.53500 -22.85847 -21.71523 -21.34152 -20.94532 -18.64871 -18.51923 -18.24366 -17.68115 -17.45416 -16.67721 -16.46511 -16.36426 -15.76794 -15.55721 -15.44530 -15.06582 -15.00037 -14.71040 -14.45384 -14.36861 -14.02551 -13.72567 -13.53140 -13.38361 -13.27126 -13.24558 -12.74774 -12.56792 -12.34165 -12.21105 -12.16522 -11.92622 -11.83705 -11.67767 -11.59968 -11.23475 -11.13875 -10.89657 -10.64286 -10.54294 -9.78448 -9.27168 -4.93013 -0.06451 0.37399 0.64938 1.29024 1.38966 1.60995 1.62782 1.94472 2.81775 3.13614 3.17217 3.37889 3.44874 3.60354 3.63704 3.72074 3.86270 3.89001 4.02427 4.06942 4.12098 4.18119 4.21370 4.24813 4.28166 4.34650 4.38224 4.40207 4.46430 4.51607 4.62619 4.76060 4.79518 4.81264 4.96326 4.99092 5.02836 5.08009 5.09489 5.12242 5.19341 5.30168 5.40665 5.47195 5.52327 5.55765 5.67660 5.97309 6.55779 6.79810 7.42617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.098 4.098 3 Si 0.781 3.219 4 C -0.089 4.089 5 C -0.093 4.093 6 C -0.022 4.022 7 C -0.008 4.008 8 C -0.017 4.017 9 N -0.279 5.279 10 C 0.109 3.891 11 C -0.094 4.094 12 H 0.068 0.932 13 C -0.124 4.124 14 C -0.145 4.145 15 C 0.101 3.899 16 H 0.064 0.936 17 O -0.592 6.592 18 C -0.114 4.114 19 C -0.099 4.099 20 N -0.104 5.104 21 N -0.306 5.306 22 C -0.097 4.097 23 C -0.107 4.107 24 C -0.118 4.118 25 H 0.393 0.607 26 H 0.085 0.915 27 H -0.292 1.292 28 H -0.289 1.289 29 H 0.105 0.895 30 H 0.240 0.760 31 H 0.115 0.885 32 H 0.150 0.850 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.392 0.608 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 0.485 -6.203 8.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.205 4.205 3 Si 0.685 3.315 4 C -0.089 4.089 5 C -0.112 4.112 6 C -0.024 4.024 7 C -0.145 4.145 8 C -0.169 4.169 9 N -0.071 5.071 10 C -0.010 4.010 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.162 4.162 14 C -0.183 4.183 15 C 0.043 3.957 16 H 0.082 0.918 17 O -0.400 6.400 18 C -0.152 4.152 19 C -0.137 4.137 20 N -0.083 5.083 21 N -0.172 5.172 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.136 4.136 25 H 0.243 0.757 26 H 0.103 0.897 27 H -0.219 1.219 28 H -0.216 1.216 29 H 0.123 0.877 30 H 0.256 0.744 31 H 0.133 0.867 32 H 0.168 0.832 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.241 0.759 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.179 0.821 43 H 0.184 0.816 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.654 0.176 -6.178 7.737 hybrid contribution -1.474 0.026 0.916 1.736 sum 3.180 0.203 -5.262 6.151 Atomic orbital electron populations 1.86562 1.18875 1.80840 1.50834 1.25253 0.83932 1.12872 0.98457 0.94059 0.89979 0.70930 0.76509 1.19424 0.99144 0.93735 0.96595 1.20974 0.98592 0.94431 0.97180 1.17880 0.99558 0.88810 0.96112 1.20723 1.02836 0.95950 0.95024 1.24196 1.04517 0.84759 1.03387 1.47660 1.31438 1.11693 1.16359 1.22747 1.06375 0.80880 0.91029 1.21426 0.98959 0.94327 0.96621 0.91316 1.21777 0.98347 0.97943 0.98152 1.22188 1.01081 0.96313 0.98738 1.21955 0.97000 0.84949 0.91839 0.91795 1.86474 1.50243 1.50309 1.52955 1.21495 0.98064 0.98758 0.96887 1.21457 1.03247 0.92016 0.96978 1.78090 1.16781 1.15641 0.97743 1.75273 1.17924 0.97973 1.26036 1.21475 0.96361 0.94907 0.98868 1.21423 0.99508 0.94279 0.97237 1.21326 0.97740 1.00275 0.94253 0.75660 0.89747 1.21944 1.21608 0.87724 0.74358 0.86723 0.83178 0.91053 0.91015 0.91600 0.92943 0.75871 0.90827 0.92361 0.89702 0.88481 0.82126 0.81628 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.99 12.74 -148.98 -1.90 -5.89 16 2 C -0.10 -0.34 2.81 71.24 0.20 -0.14 16 3 Si 0.78 -0.54 29.78 68.60 2.04 1.50 16 4 C -0.09 -0.53 5.42 -19.89 -0.11 -0.63 16 5 C -0.09 -0.91 9.27 22.48 0.21 -0.70 16 6 C -0.02 -0.13 5.88 -20.04 -0.12 -0.25 16 7 C -0.01 -0.06 6.99 41.05 0.29 0.23 16 8 C -0.02 0.02 10.96 83.76 0.92 0.94 16 9 N -0.28 -0.14 3.43 -346.87 -1.19 -1.33 16 10 C 0.11 -0.89 5.93 86.38 0.51 -0.38 16 11 C -0.09 0.49 2.38 -10.80 -0.03 0.46 16 12 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 13 C -0.12 0.02 4.91 30.59 0.15 0.17 16 14 C -0.15 -0.12 5.54 30.59 0.17 0.05 16 15 C 0.10 -0.02 3.47 30.60 0.11 0.09 16 16 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 17 O -0.59 -1.86 13.32 -148.98 -1.98 -3.84 16 18 C -0.11 0.25 5.57 30.61 0.17 0.43 16 19 C -0.10 0.81 5.21 30.61 0.16 0.97 16 20 N -0.10 -0.98 10.20 37.02 0.38 -0.60 16 21 N -0.31 -4.19 12.17 -49.31 -0.60 -4.79 16 22 C -0.10 0.13 9.58 22.48 0.22 0.34 16 23 C -0.11 0.27 10.03 22.24 0.22 0.50 16 24 C -0.12 -0.10 8.67 22.31 0.19 0.10 16 25 H 0.39 -0.55 8.74 -74.05 -0.65 -1.20 16 26 H 0.08 0.08 7.96 -2.38 -0.02 0.06 16 27 H -0.29 -1.60 7.11 99.48 0.71 -0.89 16 28 H -0.29 -1.03 7.11 99.48 0.71 -0.32 16 29 H 0.10 1.49 7.90 -2.91 -0.02 1.47 16 30 H 0.24 -2.94 7.41 -2.91 -0.02 -2.96 16 31 H 0.11 -1.13 8.14 -2.39 -0.02 -1.15 16 32 H 0.15 -2.42 8.07 -2.39 -0.02 -2.44 16 33 H 0.07 0.41 5.49 -2.38 -0.01 0.39 16 34 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.39 -1.57 9.08 -74.06 -0.67 -2.24 16 38 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.08 -0.84 8.14 -2.39 -0.02 -0.86 16 41 H 0.10 -1.15 8.14 -2.39 -0.02 -1.17 16 42 H 0.16 -1.46 7.12 -2.91 -0.02 -1.49 16 43 H 0.17 -1.56 8.06 -2.91 -0.02 -1.58 16 44 H 0.15 -0.54 4.87 -2.91 -0.01 -0.55 16 Total: 0.00 -27.85 354.58 -0.25 -28.10 By element: Atomic # 1 Polarization: -15.07 SS G_CDS: -0.25 Total: -15.32 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 3.26 Total: 2.17 kcal Atomic # 7 Polarization: -5.31 SS G_CDS: -1.41 Total: -6.72 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -3.88 Total: -9.73 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: 2.04 Total: 1.50 kcal Total: -27.85 -0.25 -28.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_274090_16737262_14928536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.356 kcal (2) G-P(sol) polarization free energy of solvation -27.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds