Wall clock time and date at job start Mon Mar 8 2021 11:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53005 * 109.47197 * 119.99802 * 2 1 3 5 5 C 1.52997 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 7 7 H 1.08992 * 109.47063 * 299.99823 * 6 5 4 8 8 N 1.46499 * 109.46799 * 179.97438 * 6 5 4 9 9 C 1.38608 * 120.00032 * 84.99924 * 8 6 5 10 10 N 1.29686 * 124.94807 * 359.69828 * 9 8 6 11 11 C 1.32122 * 116.86615 * 179.81546 * 10 9 8 12 12 C 1.33327 * 114.58137 * 0.46595 * 11 10 9 13 13 C 1.50697 * 125.95315 * 179.75202 * 12 11 10 14 14 O 1.42907 * 109.46668 * 65.03114 * 13 12 11 15 15 Si 1.86297 * 109.47004 * 185.02526 * 13 12 11 16 16 S 1.70962 * 124.95176 * 179.97438 * 9 8 6 17 17 C 1.53000 * 109.47233 * 60.00194 * 6 5 4 18 18 C 1.52997 * 109.47060 * 299.99657 * 17 6 5 19 19 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 20 20 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 21 21 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46935 * 60.00099 * 4 2 1 23 23 H 1.09001 * 109.46812 * 300.00441 * 4 2 1 24 24 H 1.08993 * 109.47194 * 179.97438 * 5 4 2 25 25 H 1.09002 * 109.46695 * 59.99734 * 5 4 2 26 26 H 0.97006 * 120.00568 * 264.99947 * 8 6 5 27 27 H 1.08007 * 122.71047 * 180.22822 * 11 10 9 28 28 H 1.08998 * 109.47501 * 305.02945 * 13 12 11 29 29 H 0.96706 * 113.99673 * 180.02562 * 14 13 12 30 30 H 1.48502 * 110.00436 * 300.00367 * 15 13 12 31 31 H 1.48507 * 109.99763 * 61.32312 * 15 13 12 32 32 H 1.09002 * 109.47398 * 59.99826 * 17 6 5 33 33 H 1.09001 * 109.47194 * 180.02562 * 17 6 5 34 34 H 1.08996 * 109.47853 * 180.02562 * 18 17 6 35 35 H 1.09002 * 109.47153 * 300.00319 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0805 -1.4416 0.0004 7 1 3.7176 -2.4693 0.0002 8 7 5.5455 -1.4406 0.0005 9 6 6.2392 -2.4234 0.6890 10 7 5.6908 -3.3829 1.3675 11 6 6.5062 -4.2370 1.9601 12 6 7.8025 -3.9812 1.7814 13 6 8.9481 -4.7827 2.3437 14 8 8.9412 -6.0912 1.7692 15 14 10.5568 -3.9351 1.9382 16 16 7.9425 -2.5434 0.7732 17 6 3.5706 -0.7203 -1.2488 18 6 2.0406 -0.7208 -1.2492 19 1 -0.3633 0.5138 0.8900 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6767 -1.7489 1.2493 23 1 1.6766 -0.2074 2.1392 24 1 3.9333 -1.2341 2.1399 25 1 3.9329 0.3071 1.2498 26 1 6.0302 -0.7521 -0.4813 27 1 6.1515 -5.0725 2.5454 28 1 8.8409 -4.8603 3.4256 29 1 9.6529 -6.6638 2.0866 30 1 10.7151 -3.8232 0.4659 31 1 10.5897 -2.5853 2.5567 32 1 3.9336 0.3075 -1.2486 33 1 3.9339 -1.2342 -2.1388 34 1 1.6772 -0.2074 -2.1394 35 1 1.6776 -1.7486 -1.2494 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_4279156_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:00:45 Heat of formation + Delta-G solvation = 2.049239 kcal Electronic energy + Delta-G solvation = -16892.213208 eV Core-core repulsion = 14210.744307 eV Total energy + Delta-G solvation = -2681.468901 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.86663 -39.81210 -37.81167 -36.36411 -32.68255 -31.81143 -31.06253 -27.38364 -26.13375 -24.29789 -23.74096 -22.42545 -20.97881 -20.45004 -19.45672 -18.43211 -17.49698 -16.91958 -16.00369 -15.77690 -15.57427 -15.28717 -15.22331 -15.20365 -14.53507 -14.36672 -14.21246 -13.62651 -13.27437 -13.22259 -12.82373 -12.66948 -12.40123 -12.17005 -12.04348 -12.01250 -11.66514 -11.49398 -11.21089 -10.88606 -10.57280 -10.26216 -10.11141 -8.69429 -5.19333 0.00704 0.14101 0.70903 1.25544 1.59958 1.95154 2.07867 2.15073 3.47503 3.60013 3.64372 3.67236 3.88595 4.00060 4.06026 4.14430 4.35289 4.41345 4.43785 4.46774 4.52337 4.69163 4.75183 4.80208 4.87146 4.92257 4.98536 5.07685 5.11880 5.18284 5.22380 5.30202 5.35730 5.48966 5.89665 6.09033 6.61368 7.04829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.111 4.111 5 C -0.129 4.129 6 C 0.160 3.840 7 H 0.091 0.909 8 N -0.690 5.690 9 C 0.334 3.666 10 N -0.546 5.546 11 C 0.124 3.876 12 C -0.263 4.263 13 C -0.017 4.017 14 O -0.546 6.546 15 Si 0.667 3.333 16 S 0.064 5.936 17 C -0.128 4.128 18 C -0.110 4.110 19 H 0.055 0.945 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.412 0.588 27 H 0.178 0.822 28 H 0.082 0.918 29 H 0.382 0.618 30 H -0.239 1.239 31 H -0.243 1.243 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.643 0.587 0.830 1.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.149 4.149 5 C -0.168 4.168 6 C 0.054 3.946 7 H 0.109 0.891 8 N -0.328 5.328 9 C -0.037 4.037 10 N -0.272 5.272 11 C -0.027 4.027 12 C -0.385 4.385 13 C -0.130 4.130 14 O -0.352 6.352 15 Si 0.567 3.433 16 S 0.312 5.688 17 C -0.166 4.166 18 C -0.148 4.148 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.249 0.751 27 H 0.195 0.805 28 H 0.099 0.901 29 H 0.230 0.770 30 H -0.163 1.163 31 H -0.167 1.167 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.574 2.073 -0.257 2.616 hybrid contribution -0.616 -0.398 0.392 0.832 sum 0.958 1.676 0.136 1.935 Atomic orbital electron populations 1.21833 0.94941 1.02023 1.01841 1.21190 0.95757 0.99641 0.94739 0.91156 1.21556 0.94502 1.01123 0.97734 1.21944 0.95939 1.00628 0.98288 1.21096 0.77350 1.01168 0.94992 0.89089 1.44245 1.06139 1.28140 1.54267 1.23815 0.92444 0.92669 0.94750 1.66476 1.36885 1.06686 1.17153 1.21358 0.87229 0.97053 0.97027 1.24258 0.97945 1.03530 1.12761 1.23676 1.03253 0.87567 0.98528 1.86528 1.56080 1.23041 1.69565 0.95209 0.82381 0.82564 0.83162 1.84091 1.05076 1.27857 1.51726 1.21831 0.96821 1.00888 0.97072 1.21536 0.93785 1.01365 0.98092 0.92564 0.92603 0.92545 0.91558 0.91595 0.91283 0.91966 0.75066 0.80533 0.90060 0.76972 1.16255 1.16743 0.91322 0.91161 0.91255 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.12 9.20 37.16 0.34 0.47 16 2 C -0.09 0.08 2.72 -90.62 -0.25 -0.17 16 3 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 4 C -0.11 0.01 5.20 -26.73 -0.14 -0.12 16 5 C -0.13 -0.07 5.51 -26.73 -0.15 -0.22 16 6 C 0.16 0.08 2.58 -67.93 -0.18 -0.10 16 7 H 0.09 0.22 7.77 -51.93 -0.40 -0.19 16 8 N -0.69 -0.64 5.23 -55.79 -0.29 -0.93 16 9 C 0.33 1.11 8.06 -87.68 -0.71 0.41 16 10 N -0.55 -2.55 9.91 -15.21 -0.15 -2.70 16 11 C 0.12 0.47 11.24 -19.14 -0.22 0.25 16 12 C -0.26 -0.87 5.76 -36.02 -0.21 -1.08 16 13 C -0.02 -0.01 2.98 36.00 0.11 0.10 16 14 O -0.55 -0.35 12.86 -35.23 -0.45 -0.80 16 15 Si 0.67 -0.21 31.07 -169.99 -5.28 -5.49 16 16 S 0.06 0.20 20.59 -107.50 -2.21 -2.01 16 17 C -0.13 0.14 5.39 -26.73 -0.14 0.00 16 18 C -0.11 0.12 5.21 -26.73 -0.14 -0.02 16 19 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 20 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 21 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 22 H 0.07 0.03 8.14 -51.93 -0.42 -0.40 16 23 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 24 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 26 H 0.41 -0.46 8.73 -40.82 -0.36 -0.82 16 27 H 0.18 0.34 8.06 -52.48 -0.42 -0.08 16 28 H 0.08 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.38 -1.77 8.74 45.56 0.40 -1.37 16 30 H -0.24 -0.69 7.11 56.52 0.40 -0.29 16 31 H -0.24 -0.50 7.11 56.52 0.40 -0.10 16 32 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 35 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 LS Contribution 296.66 15.07 4.47 4.47 Total: 0.00 -5.64 296.66 -11.06 -16.70 By element: Atomic # 1 Polarization: -3.28 SS G_CDS: -5.47 Total: -8.75 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.67 Total: -0.49 kcal Atomic # 7 Polarization: -3.18 SS G_CDS: -0.44 Total: -3.63 kcal Atomic # 8 Polarization: -0.35 SS G_CDS: -0.45 Total: -0.80 kcal Atomic # 14 Polarization: -0.21 SS G_CDS: -5.28 Total: -5.49 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -2.21 Total: -2.01 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -5.64 -11.06 -16.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_4279156_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.749 kcal (2) G-P(sol) polarization free energy of solvation -5.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds