Wall clock time and date at job start Mon Mar 8 2021 11:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53005 * 109.47197 * 119.99802 * 2 1 3 5 5 C 1.52997 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 7 7 H 1.08992 * 109.47063 * 299.99823 * 6 5 4 8 8 N 1.46499 * 109.46799 * 179.97438 * 6 5 4 9 9 C 1.38608 * 120.00032 * 84.99924 * 8 6 5 10 10 N 1.29686 * 124.94807 * 359.69828 * 9 8 6 11 11 C 1.32122 * 116.86615 * 179.81546 * 10 9 8 12 12 C 1.33327 * 114.58137 * 0.46595 * 11 10 9 13 13 C 1.50697 * 125.95315 * 179.75202 * 12 11 10 14 14 O 1.42907 * 109.46668 * 65.03114 * 13 12 11 15 15 Si 1.86297 * 109.47004 * 185.02526 * 13 12 11 16 16 S 1.70962 * 124.95176 * 179.97438 * 9 8 6 17 17 C 1.53000 * 109.47233 * 60.00194 * 6 5 4 18 18 C 1.52997 * 109.47060 * 299.99657 * 17 6 5 19 19 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 20 20 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 21 21 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46935 * 60.00099 * 4 2 1 23 23 H 1.09001 * 109.46812 * 300.00441 * 4 2 1 24 24 H 1.08993 * 109.47194 * 179.97438 * 5 4 2 25 25 H 1.09002 * 109.46695 * 59.99734 * 5 4 2 26 26 H 0.97006 * 120.00568 * 264.99947 * 8 6 5 27 27 H 1.08007 * 122.71047 * 180.22822 * 11 10 9 28 28 H 1.08998 * 109.47501 * 305.02945 * 13 12 11 29 29 H 0.96706 * 113.99673 * 180.02562 * 14 13 12 30 30 H 1.48502 * 110.00436 * 300.00367 * 15 13 12 31 31 H 1.48507 * 109.99763 * 61.32312 * 15 13 12 32 32 H 1.09002 * 109.47398 * 59.99826 * 17 6 5 33 33 H 1.09001 * 109.47194 * 180.02562 * 17 6 5 34 34 H 1.08996 * 109.47853 * 180.02562 * 18 17 6 35 35 H 1.09002 * 109.47153 * 300.00319 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0805 -1.4416 0.0004 7 1 3.7176 -2.4693 0.0002 8 7 5.5455 -1.4406 0.0005 9 6 6.2392 -2.4234 0.6890 10 7 5.6908 -3.3829 1.3675 11 6 6.5062 -4.2370 1.9601 12 6 7.8025 -3.9812 1.7814 13 6 8.9481 -4.7827 2.3437 14 8 8.9412 -6.0912 1.7692 15 14 10.5568 -3.9351 1.9382 16 16 7.9425 -2.5434 0.7732 17 6 3.5706 -0.7203 -1.2488 18 6 2.0406 -0.7208 -1.2492 19 1 -0.3633 0.5138 0.8900 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6767 -1.7489 1.2493 23 1 1.6766 -0.2074 2.1392 24 1 3.9333 -1.2341 2.1399 25 1 3.9329 0.3071 1.2498 26 1 6.0302 -0.7521 -0.4813 27 1 6.1515 -5.0725 2.5454 28 1 8.8409 -4.8603 3.4256 29 1 9.6529 -6.6638 2.0866 30 1 10.7151 -3.8232 0.4659 31 1 10.5897 -2.5853 2.5567 32 1 3.9336 0.3075 -1.2486 33 1 3.9339 -1.2342 -2.1388 34 1 1.6772 -0.2074 -2.1394 35 1 1.6776 -1.7486 -1.2494 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_4279156_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:00:43 Heat of formation + Delta-G solvation = 6.135865 kcal Electronic energy + Delta-G solvation = -16892.035999 eV Core-core repulsion = 14210.744307 eV Total energy + Delta-G solvation = -2681.291692 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.103 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.02961 -39.87853 -37.82775 -36.43893 -32.73796 -31.81483 -31.17033 -27.44015 -26.23549 -24.44207 -23.73504 -22.47701 -20.99758 -20.60249 -19.60385 -18.43168 -17.65254 -16.98057 -16.14474 -15.86997 -15.69165 -15.31022 -15.25625 -15.22241 -14.67883 -14.41092 -14.28872 -13.65023 -13.27930 -13.20473 -12.92435 -12.68788 -12.55385 -12.20234 -12.15670 -12.01196 -11.65050 -11.51750 -11.24602 -10.93441 -10.77158 -10.42474 -10.23918 -8.86736 -5.19846 -0.20428 -0.06525 0.50030 1.23092 1.56268 1.84738 1.91675 2.04537 3.46514 3.56850 3.60718 3.67823 3.87988 3.96533 4.06401 4.13401 4.34219 4.39248 4.46202 4.47848 4.53311 4.61586 4.71787 4.76395 4.88277 4.93217 5.01659 5.03393 5.12349 5.13898 5.19350 5.34124 5.36437 5.51443 5.74821 6.03054 6.84828 6.92228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.074 0.926 4 C -0.108 4.108 5 C -0.122 4.122 6 C 0.164 3.836 7 H 0.070 0.930 8 N -0.682 5.682 9 C 0.329 3.671 10 N -0.571 5.571 11 C 0.110 3.890 12 C -0.274 4.274 13 C -0.024 4.024 14 O -0.564 6.564 15 Si 0.757 3.243 16 S 0.050 5.950 17 C -0.121 4.121 18 C -0.108 4.108 19 H 0.055 0.945 20 H 0.060 0.940 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.422 0.578 27 H 0.189 0.811 28 H 0.107 0.893 29 H 0.405 0.595 30 H -0.285 1.285 31 H -0.276 1.276 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 0.730 0.838 2.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 H 0.093 0.907 4 C -0.146 4.146 5 C -0.161 4.161 6 C 0.057 3.943 7 H 0.089 0.911 8 N -0.321 5.321 9 C -0.042 4.042 10 N -0.297 5.297 11 C -0.040 4.040 12 C -0.396 4.396 13 C -0.137 4.137 14 O -0.374 6.374 15 Si 0.661 3.339 16 S 0.298 5.702 17 C -0.159 4.159 18 C -0.146 4.146 19 H 0.074 0.926 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.261 0.739 27 H 0.206 0.794 28 H 0.124 0.876 29 H 0.257 0.743 30 H -0.211 1.211 31 H -0.202 1.202 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.770 2.197 -0.235 2.831 hybrid contribution -0.666 -0.442 0.371 0.881 sum 1.104 1.755 0.136 2.078 Atomic orbital electron populations 1.21828 0.94821 1.01897 1.02061 1.21160 0.95819 0.99673 0.94308 0.90742 1.21527 0.93920 1.00826 0.98352 1.21861 0.96404 1.00528 0.97326 1.21064 0.77021 1.00266 0.95915 0.91148 1.44337 1.06368 1.27756 1.53620 1.23997 0.92626 0.92855 0.94702 1.66486 1.37704 1.07452 1.18062 1.21612 0.87539 0.97443 0.97427 1.24651 0.98813 1.03649 1.12482 1.23856 1.02459 0.87574 0.99766 1.86474 1.57601 1.23216 1.70121 0.94234 0.80445 0.80084 0.79088 1.84097 1.05329 1.28536 1.52246 1.21787 0.96781 1.01291 0.96033 1.21533 0.93672 1.01114 0.98321 0.92591 0.92136 0.92859 0.92350 0.91516 0.93444 0.91364 0.73899 0.79376 0.87589 0.74350 1.21143 1.20217 0.90094 0.90956 0.90335 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.28 9.20 71.98 0.66 0.94 16 2 C -0.09 0.17 2.72 -10.79 -0.03 0.14 16 3 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 4 C -0.11 -0.03 5.20 30.60 0.16 0.13 16 5 C -0.12 -0.23 5.51 30.59 0.17 -0.06 16 6 C 0.16 0.28 2.58 44.99 0.12 0.40 16 7 H 0.07 0.44 7.77 -2.39 -0.02 0.42 16 8 N -0.68 -1.78 5.23 -330.41 -1.73 -3.50 16 9 C 0.33 2.59 8.06 179.32 1.45 4.03 16 10 N -0.57 -6.11 9.91 -202.02 -2.00 -8.11 16 11 C 0.11 0.93 11.24 83.54 0.94 1.87 16 12 C -0.27 -1.97 5.76 24.57 0.14 -1.82 16 13 C -0.02 -0.01 2.98 71.23 0.21 0.20 16 14 O -0.56 -0.30 12.86 -148.98 -1.92 -2.21 16 15 Si 0.76 -0.50 31.07 68.60 2.13 1.64 16 16 S 0.05 0.37 20.59 -56.49 -1.16 -0.80 16 17 C -0.12 0.30 5.39 30.59 0.16 0.47 16 18 C -0.11 0.27 5.21 30.59 0.16 0.43 16 19 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 20 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 21 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 22 H 0.06 0.11 8.14 -2.39 -0.02 0.10 16 23 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 24 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.42 -0.82 8.73 -92.70 -0.81 -1.63 16 27 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 28 H 0.11 -0.45 7.96 -2.39 -0.02 -0.47 16 29 H 0.40 -4.28 8.74 -74.05 -0.65 -4.93 16 30 H -0.28 -1.97 7.11 99.48 0.71 -1.26 16 31 H -0.28 -1.27 7.11 99.48 0.71 -0.57 16 32 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -14.14 296.66 -0.87 -15.01 By element: Atomic # 1 Polarization: -8.40 SS G_CDS: -0.34 Total: -8.73 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 4.14 Total: 6.71 kcal Atomic # 7 Polarization: -7.89 SS G_CDS: -3.73 Total: -11.62 kcal Atomic # 8 Polarization: -0.30 SS G_CDS: -1.92 Total: -2.21 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: 2.13 Total: 1.64 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.16 Total: -0.80 kcal Total: -14.14 -0.87 -15.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_4279156_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.148 kcal (2) G-P(sol) polarization free energy of solvation -14.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds