Wall clock time and date at job start Mon Mar 8 2021 07:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86305 * 109.46955 * 2 1 4 4 C 1.50701 * 109.47218 * 119.99892 * 2 1 3 5 5 C 1.33323 * 125.95035 * 65.00165 * 4 2 1 6 6 N 1.32124 * 114.57758 * 179.97438 * 5 4 2 7 7 C 1.29681 * 116.86810 * 359.97438 * 6 5 4 8 8 N 1.38613 * 124.95369 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99418 * 0.02562 * 8 7 6 10 10 H 1.08993 * 109.47068 * 325.00268 * 9 8 7 11 11 C 1.52997 * 109.46949 * 85.00217 * 9 8 7 12 12 C 1.53005 * 109.47452 * 59.99848 * 11 9 8 13 13 C 1.52999 * 109.47159 * 59.99536 * 12 11 9 14 14 H 1.09002 * 109.46716 * 60.00455 * 13 12 11 15 15 C 1.52992 * 109.46961 * 180.02562 * 13 12 11 16 16 O 1.42900 * 109.47498 * 295.00164 * 15 13 12 17 17 C 1.52997 * 109.47317 * 300.00546 * 13 12 11 18 18 C 1.53000 * 109.47060 * 59.99960 * 17 13 12 19 19 S 1.70966 * 110.10072 * 0.24507 * 7 6 5 20 20 H 0.96702 * 113.99889 * 300.00169 * 1 2 3 21 21 H 1.08997 * 109.47569 * 240.00263 * 2 1 3 22 22 H 1.48502 * 110.00074 * 299.99902 * 3 2 1 23 23 H 1.48497 * 110.00157 * 61.32064 * 3 2 1 24 24 H 1.07998 * 122.71194 * 0.02562 * 5 4 2 25 25 H 0.97000 * 120.00303 * 180.02562 * 8 7 6 26 26 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 27 27 H 1.09001 * 109.47289 * 299.99924 * 11 9 8 28 28 H 1.09000 * 109.47360 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.46935 * 300.00125 * 12 11 9 30 30 H 1.09001 * 109.47359 * 55.00566 * 15 13 12 31 31 H 1.09002 * 109.46906 * 175.00585 * 15 13 12 32 32 H 0.96702 * 114.00498 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.47153 * 299.99641 * 17 13 12 34 34 H 1.09001 * 109.46832 * 179.97438 * 17 13 12 35 35 H 1.08992 * 109.47399 * 59.99823 * 18 17 13 36 36 H 1.09004 * 109.46724 * 180.02562 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7623 -2.0025 1.5122 6 7 2.2983 -2.3904 2.6558 7 6 2.9125 -1.4850 3.3520 8 7 3.5323 -1.7062 4.5720 9 6 3.5236 -3.0455 5.1658 10 1 2.5805 -3.5398 4.9333 11 6 4.6830 -3.8641 4.5943 12 6 6.0070 -3.1702 4.9206 13 6 6.1626 -3.0561 6.4384 14 1 6.1561 -4.0525 6.8801 15 6 7.4862 -2.3616 6.7645 16 8 8.5737 -3.1824 6.3337 17 6 5.0032 -2.2374 7.0098 18 6 3.6793 -2.9314 6.6836 19 16 2.8400 0.0229 2.5496 20 1 -0.3933 0.4417 0.7651 21 1 1.7924 -0.5138 -0.8900 22 1 1.5614 2.4680 -1.2085 23 1 1.5879 2.4586 1.2242 24 1 1.2308 -2.6778 0.8580 25 1 3.9718 -0.9742 5.0325 26 1 4.6768 -4.8605 5.0364 27 1 4.5722 -3.9454 3.5130 28 1 6.8329 -3.7532 4.5131 29 1 6.0134 -2.1737 4.4788 30 1 7.5294 -1.4017 6.2499 31 1 7.5566 -2.2006 7.8403 32 1 9.4460 -2.8038 6.5093 33 1 5.0096 -1.2409 6.5680 34 1 5.1139 -2.1565 8.0911 35 1 3.6729 -3.9278 7.1253 36 1 2.8533 -2.3479 7.0903 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_7044652_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:14:40 Heat of formation + Delta-G solvation = -41.181406 kcal Electronic energy + Delta-G solvation = -19029.546683 eV Core-core repulsion = 16027.520968 eV Total energy + Delta-G solvation = -3002.025715 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06169 -40.06308 -38.07813 -37.58973 -35.36917 -32.11708 -31.88489 -30.77276 -26.79036 -26.31238 -24.49691 -23.72517 -22.44469 -21.39593 -19.90883 -19.75707 -18.31872 -17.97787 -17.30854 -16.57738 -16.41434 -16.25288 -15.88945 -15.66011 -15.50296 -14.95882 -14.91460 -14.72353 -13.97421 -13.85233 -13.58804 -13.25119 -13.11729 -12.78232 -12.56454 -12.35957 -12.26200 -11.97152 -11.73907 -11.55353 -11.18656 -10.97568 -10.87311 -10.83070 -10.18703 -10.14804 -8.68232 -5.02759 0.03177 0.08847 0.74156 1.27806 1.57170 1.92363 2.09236 2.18719 3.11948 3.37951 3.56827 3.64509 3.70998 3.84779 3.95612 3.98629 4.15960 4.29771 4.36957 4.38341 4.43775 4.54407 4.56791 4.60018 4.69777 4.80018 4.89815 4.93591 5.00227 5.04641 5.17581 5.31130 5.36977 5.39420 5.91320 6.10053 6.38599 6.63203 7.07107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.527 6.527 2 C -0.017 4.017 3 Si 0.653 3.347 4 C -0.307 4.307 5 C 0.121 3.879 6 N -0.551 5.551 7 C 0.330 3.670 8 N -0.685 5.685 9 C 0.160 3.840 10 H 0.091 0.909 11 C -0.131 4.131 12 C -0.107 4.107 13 C -0.089 4.089 14 H 0.080 0.920 15 C 0.079 3.921 16 O -0.572 6.572 17 C -0.115 4.115 18 C -0.127 4.127 19 S 0.079 5.921 20 H 0.376 0.624 21 H 0.125 0.875 22 H -0.238 1.238 23 H -0.244 1.244 24 H 0.175 0.825 25 H 0.411 0.589 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.380 0.620 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.180 2.097 3.161 4.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.333 6.333 2 C -0.130 4.130 3 Si 0.552 3.448 4 C -0.430 4.430 5 C -0.030 4.030 6 N -0.276 5.276 7 C -0.040 4.040 8 N -0.325 5.325 9 C 0.054 3.946 10 H 0.109 0.891 11 C -0.170 4.170 12 C -0.145 4.145 13 C -0.107 4.107 14 H 0.099 0.901 15 C 0.001 3.999 16 O -0.378 6.378 17 C -0.152 4.152 18 C -0.165 4.165 19 S 0.328 5.672 20 H 0.224 0.776 21 H 0.142 0.858 22 H -0.161 1.161 23 H -0.168 1.168 24 H 0.192 0.808 25 H 0.250 0.750 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.227 0.773 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.891 2.537 2.930 4.836 hybrid contribution -0.781 -0.086 0.423 0.892 sum 2.111 2.451 3.353 4.659 Atomic orbital electron populations 1.86616 1.17585 1.79919 1.49184 1.24056 0.83415 1.09797 0.95722 0.95165 0.91882 0.75268 0.82486 1.25463 1.15451 0.98232 1.03812 1.21341 0.96448 0.93104 0.92085 1.66494 1.18893 1.33552 1.08657 1.23744 0.95129 0.92982 0.92176 1.44270 1.58768 1.12119 1.17342 1.21027 0.99808 0.81927 0.91861 0.89070 1.21959 0.94242 0.98922 1.01882 1.21471 0.97445 1.01033 0.94555 1.21184 0.92370 1.00233 0.96948 0.90146 1.22228 0.86952 0.93000 0.97726 1.86479 1.17091 1.48932 1.85290 1.21517 0.93936 0.98612 1.01172 1.21839 0.97624 1.02570 0.94488 1.84015 1.55879 1.11418 1.15877 0.77613 0.85752 1.16147 1.16788 0.80805 0.75049 0.90890 0.91088 0.91101 0.92309 0.93763 0.93679 0.77275 0.92147 0.91067 0.89759 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.77 12.88 -35.23 -0.45 -1.23 16 2 C -0.02 0.00 2.99 36.01 0.11 0.10 16 3 Si 0.65 -0.21 31.07 -169.99 -5.28 -5.49 16 4 C -0.31 -0.31 5.73 -36.02 -0.21 -0.51 16 5 C 0.12 0.26 11.24 -19.14 -0.22 0.04 16 6 N -0.55 -1.66 9.90 -15.21 -0.15 -1.81 16 7 C 0.33 0.45 8.06 -87.68 -0.71 -0.25 16 8 N -0.68 0.47 4.39 -55.78 -0.24 0.22 16 9 C 0.16 -0.12 2.92 -67.93 -0.20 -0.32 16 10 H 0.09 0.08 7.76 -51.93 -0.40 -0.33 16 11 C -0.13 0.01 5.62 -26.73 -0.15 -0.14 16 12 C -0.11 0.03 4.94 -26.73 -0.13 -0.10 16 13 C -0.09 0.11 2.43 -90.63 -0.22 -0.11 16 14 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 15 C 0.08 -0.11 6.43 37.15 0.24 0.13 16 16 O -0.57 -0.11 13.20 -35.23 -0.46 -0.58 16 17 C -0.11 0.32 5.03 -26.73 -0.13 0.19 16 18 C -0.13 0.31 5.61 -26.73 -0.15 0.16 16 19 S 0.08 0.02 20.59 -107.50 -2.21 -2.19 16 20 H 0.38 -0.42 8.70 45.56 0.40 -0.02 16 21 H 0.12 -0.09 7.96 -51.93 -0.41 -0.51 16 22 H -0.24 -0.55 7.11 56.52 0.40 -0.15 16 23 H -0.24 -0.37 7.11 56.52 0.40 0.03 16 24 H 0.17 0.17 8.06 -52.49 -0.42 -0.25 16 25 H 0.41 -0.97 6.99 -40.82 -0.29 -1.26 16 26 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 27 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 28 H 0.07 0.10 7.82 -51.93 -0.41 -0.31 16 29 H 0.06 -0.01 7.60 -51.93 -0.39 -0.40 16 30 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.04 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.38 -1.43 9.12 45.56 0.42 -1.02 16 33 H 0.06 -0.21 6.51 -51.93 -0.34 -0.54 16 34 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 35 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 36 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 LS Contribution 302.87 15.07 4.56 4.56 Total: 0.00 -5.74 302.87 -10.44 -16.19 By element: Atomic # 1 Polarization: -4.43 SS G_CDS: -4.43 Total: -8.86 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.77 Total: -0.81 kcal Atomic # 7 Polarization: -1.19 SS G_CDS: -0.40 Total: -1.59 kcal Atomic # 8 Polarization: -0.89 SS G_CDS: -0.92 Total: -1.81 kcal Atomic # 14 Polarization: -0.21 SS G_CDS: -5.28 Total: -5.49 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.21 Total: -2.19 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -5.74 -10.44 -16.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_7044652_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.996 kcal (2) G-P(sol) polarization free energy of solvation -5.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds