Wall clock time and date at job start Mon Mar 8 2021 07:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86305 * 109.46955 * 2 1 4 4 C 1.50701 * 109.47218 * 119.99892 * 2 1 3 5 5 C 1.33323 * 125.95035 * 65.00165 * 4 2 1 6 6 N 1.32124 * 114.57758 * 179.97438 * 5 4 2 7 7 C 1.29681 * 116.86810 * 359.97438 * 6 5 4 8 8 N 1.38613 * 124.95369 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99418 * 0.02562 * 8 7 6 10 10 H 1.08993 * 109.47068 * 325.00268 * 9 8 7 11 11 C 1.52997 * 109.46949 * 85.00217 * 9 8 7 12 12 C 1.53005 * 109.47452 * 59.99848 * 11 9 8 13 13 C 1.52999 * 109.47159 * 59.99536 * 12 11 9 14 14 H 1.09002 * 109.46716 * 60.00455 * 13 12 11 15 15 C 1.52992 * 109.46961 * 180.02562 * 13 12 11 16 16 O 1.42900 * 109.47498 * 295.00164 * 15 13 12 17 17 C 1.52997 * 109.47317 * 300.00546 * 13 12 11 18 18 C 1.53000 * 109.47060 * 59.99960 * 17 13 12 19 19 S 1.70966 * 110.10072 * 0.24507 * 7 6 5 20 20 H 0.96702 * 113.99889 * 300.00169 * 1 2 3 21 21 H 1.08997 * 109.47569 * 240.00263 * 2 1 3 22 22 H 1.48502 * 110.00074 * 299.99902 * 3 2 1 23 23 H 1.48497 * 110.00157 * 61.32064 * 3 2 1 24 24 H 1.07998 * 122.71194 * 0.02562 * 5 4 2 25 25 H 0.97000 * 120.00303 * 180.02562 * 8 7 6 26 26 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 27 27 H 1.09001 * 109.47289 * 299.99924 * 11 9 8 28 28 H 1.09000 * 109.47360 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.46935 * 300.00125 * 12 11 9 30 30 H 1.09001 * 109.47359 * 55.00566 * 15 13 12 31 31 H 1.09002 * 109.46906 * 175.00585 * 15 13 12 32 32 H 0.96702 * 114.00498 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.47153 * 299.99641 * 17 13 12 34 34 H 1.09001 * 109.46832 * 179.97438 * 17 13 12 35 35 H 1.08992 * 109.47399 * 59.99823 * 18 17 13 36 36 H 1.09004 * 109.46724 * 180.02562 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7623 -2.0025 1.5122 6 7 2.2983 -2.3904 2.6558 7 6 2.9125 -1.4850 3.3520 8 7 3.5323 -1.7062 4.5720 9 6 3.5236 -3.0455 5.1658 10 1 2.5805 -3.5398 4.9333 11 6 4.6830 -3.8641 4.5943 12 6 6.0070 -3.1702 4.9206 13 6 6.1626 -3.0561 6.4384 14 1 6.1561 -4.0525 6.8801 15 6 7.4862 -2.3616 6.7645 16 8 8.5737 -3.1824 6.3337 17 6 5.0032 -2.2374 7.0098 18 6 3.6793 -2.9314 6.6836 19 16 2.8400 0.0229 2.5496 20 1 -0.3933 0.4417 0.7651 21 1 1.7924 -0.5138 -0.8900 22 1 1.5614 2.4680 -1.2085 23 1 1.5879 2.4586 1.2242 24 1 1.2308 -2.6778 0.8580 25 1 3.9718 -0.9742 5.0325 26 1 4.6768 -4.8605 5.0364 27 1 4.5722 -3.9454 3.5130 28 1 6.8329 -3.7532 4.5131 29 1 6.0134 -2.1737 4.4788 30 1 7.5294 -1.4017 6.2499 31 1 7.5566 -2.2006 7.8403 32 1 9.4460 -2.8038 6.5093 33 1 5.0096 -1.2409 6.5680 34 1 5.1139 -2.1565 8.0911 35 1 3.6729 -3.9278 7.1253 36 1 2.8533 -2.3479 7.0903 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_7044652_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:14:39 Heat of formation + Delta-G solvation = -40.000986 kcal Electronic energy + Delta-G solvation = -19029.495496 eV Core-core repulsion = 16027.520968 eV Total energy + Delta-G solvation = -3001.974528 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.07634 -40.06650 -38.10148 -37.56426 -35.34651 -32.10434 -31.81416 -30.79749 -26.77860 -26.30127 -24.54446 -23.63300 -22.39808 -21.37662 -19.93613 -19.76125 -18.26782 -18.00434 -17.31338 -16.58337 -16.38353 -16.25285 -15.92569 -15.65760 -15.45647 -14.99994 -14.93308 -14.62836 -13.96441 -13.90984 -13.52983 -13.18634 -13.07965 -12.81458 -12.48217 -12.46135 -12.16474 -12.02605 -11.70132 -11.47621 -11.10209 -10.96480 -10.89831 -10.77289 -10.26946 -10.21080 -8.71724 -5.02817 -0.04292 0.03765 0.67524 1.25669 1.53890 1.87847 1.98674 2.21087 3.30285 3.39472 3.63570 3.71443 3.74105 3.90999 3.95540 4.05660 4.28056 4.41349 4.44301 4.49290 4.52466 4.57472 4.66869 4.71233 4.72463 4.79260 4.97458 5.02865 5.10587 5.13536 5.15604 5.29920 5.40934 5.45976 5.87910 6.17147 6.43856 6.89983 7.03104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.023 4.023 3 Si 0.722 3.278 4 C -0.307 4.307 5 C 0.105 3.895 6 N -0.578 5.578 7 C 0.320 3.680 8 N -0.676 5.676 9 C 0.165 3.835 10 H 0.074 0.926 11 C -0.126 4.126 12 C -0.100 4.100 13 C -0.087 4.087 14 H 0.069 0.931 15 C 0.076 3.924 16 O -0.597 6.597 17 C -0.109 4.109 18 C -0.121 4.121 19 S 0.106 5.894 20 H 0.386 0.614 21 H 0.134 0.866 22 H -0.275 1.275 23 H -0.265 1.265 24 H 0.177 0.823 25 H 0.420 0.580 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.395 0.605 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 2.952 4.047 6.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.135 4.135 3 Si 0.624 3.376 4 C -0.430 4.430 5 C -0.046 4.046 6 N -0.304 5.304 7 C -0.051 4.051 8 N -0.317 5.317 9 C 0.058 3.942 10 H 0.092 0.908 11 C -0.165 4.165 12 C -0.138 4.138 13 C -0.105 4.105 14 H 0.087 0.913 15 C -0.002 4.002 16 O -0.405 6.405 17 C -0.147 4.147 18 C -0.159 4.159 19 S 0.355 5.645 20 H 0.235 0.765 21 H 0.152 0.848 22 H -0.200 1.200 23 H -0.191 1.191 24 H 0.194 0.806 25 H 0.261 0.739 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.274 3.391 3.840 6.080 hybrid contribution -0.894 -0.350 0.126 0.969 sum 2.380 3.041 3.967 5.536 Atomic orbital electron populations 1.86589 1.18271 1.80289 1.49962 1.24267 0.82968 1.10442 0.95841 0.94356 0.90796 0.73200 0.79221 1.25580 1.15194 0.98048 1.04174 1.21463 0.97070 0.93763 0.92262 1.66486 1.19905 1.34682 1.09349 1.23955 0.95109 0.93412 0.92648 1.44294 1.58259 1.12457 1.16720 1.20948 0.98502 0.81676 0.93070 0.90779 1.21880 0.94857 0.99286 1.00453 1.21372 0.96345 1.00514 0.95532 1.21166 0.93421 1.00114 0.95840 0.91284 1.22320 0.86352 0.93033 0.98486 1.86441 1.18411 1.50030 1.85640 1.21495 0.92708 0.98656 1.01839 1.21804 0.98221 1.03060 0.92822 1.83850 1.55326 1.10240 1.15083 0.76518 0.84841 1.20039 1.19054 0.80585 0.73943 0.90872 0.93300 0.93111 0.92221 0.92872 0.92575 0.75576 0.91064 0.89935 0.89456 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.69 12.88 -148.98 -1.92 -3.61 16 2 C -0.02 -0.01 2.99 71.24 0.21 0.20 16 3 Si 0.72 -0.56 31.07 68.60 2.13 1.57 16 4 C -0.31 -0.67 5.73 24.57 0.14 -0.53 16 5 C 0.11 0.54 11.24 83.54 0.94 1.47 16 6 N -0.58 -4.06 9.90 -202.03 -2.00 -6.06 16 7 C 0.32 0.98 8.06 179.32 1.45 2.42 16 8 N -0.68 0.94 4.39 -330.40 -1.45 -0.51 16 9 C 0.16 -0.18 2.92 44.99 0.13 -0.05 16 10 H 0.07 0.21 7.76 -2.39 -0.02 0.19 16 11 C -0.13 -0.12 5.62 30.60 0.17 0.05 16 12 C -0.10 -0.01 4.94 30.60 0.15 0.14 16 13 C -0.09 0.24 2.43 -10.80 -0.03 0.22 16 14 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 15 C 0.08 -0.25 6.43 71.98 0.46 0.21 16 16 O -0.60 -0.25 13.20 -148.98 -1.97 -2.22 16 17 C -0.11 0.75 5.03 30.59 0.15 0.90 16 18 C -0.12 0.66 5.61 30.60 0.17 0.84 16 19 S 0.11 0.03 20.59 -56.49 -1.16 -1.13 16 20 H 0.39 -0.80 8.70 -74.06 -0.64 -1.44 16 21 H 0.13 -0.22 7.96 -2.39 -0.02 -0.24 16 22 H -0.27 -1.46 7.11 99.48 0.71 -0.75 16 23 H -0.26 -0.72 7.11 99.48 0.71 -0.01 16 24 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 25 H 0.42 -2.34 6.99 -92.71 -0.65 -2.99 16 26 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.05 0.22 7.82 -2.39 -0.02 0.20 16 29 H 0.06 -0.01 7.60 -2.39 -0.02 -0.03 16 30 H 0.05 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.39 -3.01 9.12 -74.06 -0.68 -3.69 16 33 H 0.07 -0.62 6.51 -2.39 -0.02 -0.63 16 34 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 Total: 0.00 -13.82 302.87 -3.24 -17.05 By element: Atomic # 1 Polarization: -10.15 SS G_CDS: -0.82 Total: -10.97 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 3.95 Total: 5.88 kcal Atomic # 7 Polarization: -3.12 SS G_CDS: -3.45 Total: -6.57 kcal Atomic # 8 Polarization: -1.95 SS G_CDS: -3.88 Total: -5.83 kcal Atomic # 14 Polarization: -0.56 SS G_CDS: 2.13 Total: 1.57 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.16 Total: -1.13 kcal Total: -13.82 -3.24 -17.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_7044652_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.950 kcal (2) G-P(sol) polarization free energy of solvation -13.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds