Wall clock time and date at job start Mon Mar 8 2021 08:14:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.33323 * 125.94829 * 2 1
4 4 C 1.50700 * 122.71367 * 0.04449 * 3 2 1
5 5 O 1.42904 * 109.46833 * 29.94860 * 4 3 2
6 6 Si 1.86305 * 109.47226 * 149.94797 * 4 3 2
7 7 N 1.32124 * 114.58053 * 180.02562 * 3 2 1
8 8 C 1.29683 * 116.86353 * 0.02562 * 7 3 2
9 9 N 1.38609 * 124.94818 * 179.97438 * 8 7 3
10 10 C 1.46507 * 120.00066 * 180.02562 * 9 8 7
11 11 H 1.08997 * 109.46938 * 325.00680 * 10 9 8
12 12 C 1.53003 * 109.46660 * 84.99852 * 10 9 8
13 13 C 1.53002 * 109.46987 * 179.97438 * 12 10 9
14 14 C 1.53011 * 109.47027 * 300.00200 * 13 12 10
15 15 H 1.08994 * 109.46894 * 299.99787 * 14 13 12
16 16 O 1.42900 * 109.47035 * 179.97438 * 14 13 12
17 17 C 1.53004 * 109.46877 * 60.00140 * 14 13 12
18 18 C 1.52994 * 109.47204 * 204.99810 * 10 9 8
19 19 S 1.70968 * 110.10323 * 0.02562 * 8 7 3
20 20 H 1.09008 * 109.47054 * 179.97438 * 1 2 3
21 21 H 1.08994 * 109.47418 * 299.99420 * 1 2 3
22 22 H 1.09003 * 109.46961 * 60.00328 * 1 2 3
23 23 H 1.09000 * 109.47371 * 269.94951 * 4 3 2
24 24 H 0.96701 * 114.00005 * 60.00144 * 5 4 3
25 25 H 1.48502 * 109.99540 * 180.02562 * 6 4 3
26 26 H 1.48496 * 109.99987 * 301.31904 * 6 4 3
27 27 H 0.96995 * 120.00445 * 0.02816 * 9 8 7
28 28 H 1.08993 * 109.47474 * 300.00331 * 12 10 9
29 29 H 1.09003 * 109.47190 * 60.00583 * 12 10 9
30 30 H 1.09000 * 109.47154 * 180.02562 * 13 12 10
31 31 H 1.08994 * 109.47110 * 59.99855 * 13 12 10
32 32 H 0.96700 * 113.99565 * 59.99920 * 16 14 13
33 33 H 1.08999 * 109.46952 * 180.02562 * 17 14 13
34 34 H 1.08997 * 109.46949 * 59.99888 * 17 14 13
35 35 H 1.08997 * 109.47523 * 300.00697 * 18 10 9
36 36 H 1.09000 * 109.46829 * 60.00490 * 18 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2897 1.0793 0.0000
4 6 1.7414 2.4830 0.0010
5 8 0.4811 2.5015 0.6744
6 14 2.9321 3.6143 0.8804
7 7 3.5850 0.8189 -0.0005
8 6 3.9315 -0.4308 -0.0015
9 7 5.2385 -0.8924 -0.0027
10 6 5.5067 -2.3327 -0.0043
11 1 4.7459 -2.8446 0.5850
12 6 5.4756 -2.8556 -1.4419
13 6 5.7563 -4.3596 -1.4437
14 6 7.1355 -4.6217 -0.8353
15 1 7.8959 -4.1095 -1.4247
16 8 7.3975 -6.0265 -0.8364
17 6 7.1665 -4.0989 0.6023
18 6 6.8856 -2.5954 0.6042
19 16 2.5413 -1.4260 -0.0025
20 1 -0.3633 -1.0277 -0.0005
21 1 -0.3634 0.5137 0.8900
22 1 -0.3633 0.5138 -0.8900
23 1 1.6093 2.8223 -1.0264
24 1 0.5231 2.2110 1.5958
25 1 2.4024 5.0016 0.8887
26 1 3.1451 3.1441 2.2727
27 1 5.9755 -0.2619 -0.0024
28 1 4.4933 -2.6684 -1.8754
29 1 6.2364 -2.3437 -2.0312
30 1 5.7346 -4.7320 -2.4678
31 1 4.9959 -4.8718 -0.8542
32 1 7.3932 -6.4266 -1.7167
33 1 8.1492 -4.2852 1.0356
34 1 6.4060 -4.6111 1.1917
35 1 7.6463 -2.0834 0.0150
36 1 6.9076 -2.2229 1.6284
There are 47 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 47
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_27_7763798_15704122.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 08:14:35
Heat of formation + Delta-G solvation = -42.365059 kcal
Electronic energy + Delta-G solvation = -19033.295343 eV
Core-core repulsion = 16031.218302 eV
Total energy + Delta-G solvation = -3002.077042 eV
No. of doubly occupied orbitals = 47
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 271.103 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.09887 -40.39749 -38.14366 -37.32178 -35.06208 -32.67581 -32.10759 -30.00153
-28.54816 -25.57731 -24.56217 -23.98132 -23.07978 -21.52147 -20.40126 -19.12345
-18.35003 -17.97259 -17.35987 -16.96844 -16.56616 -16.08559 -15.69061 -15.63561
-15.42841 -14.89600 -14.47539 -14.11842 -13.95118 -13.73069 -13.59159 -13.49993
-13.39726 -13.15009 -12.85168 -12.50886 -12.38982 -12.31317 -11.99738 -11.75175
-11.52137 -11.04403 -10.89329 -10.58528 -10.46054 -9.97641 -8.61670 -4.66182
0.03910 0.19248 0.79663 1.40016 1.82160 1.84321 1.97694 2.12889
3.04921 3.30398 3.33851 3.46917 3.55201 3.79280 3.87182 3.97698
4.04818 4.13006 4.19303 4.21920 4.34882 4.47997 4.59308 4.62694
4.68421 4.79725 4.82505 4.87124 4.89543 4.91753 5.02714 5.08407
5.15652 5.29899 5.58536 6.25160 6.39058 6.58511 6.96540
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 C -0.244 4.244
3 C 0.068 3.932
4 C -0.042 4.042
5 O -0.526 6.526
6 Si 0.722 3.278
7 N -0.539 5.539
8 C 0.321 3.679
9 N -0.691 5.691
10 C 0.150 3.850
11 H 0.083 0.917
12 C -0.135 4.135
13 C -0.150 4.150
14 C 0.102 3.898
15 H 0.058 0.942
16 O -0.567 6.567
17 C -0.110 4.110
18 C -0.122 4.122
19 S 0.099 5.901
20 H 0.058 0.942
21 H 0.079 0.921
22 H 0.076 0.924
23 H 0.124 0.876
24 H 0.375 0.625
25 H -0.261 1.261
26 H -0.268 1.268
27 H 0.413 0.587
28 H 0.072 0.928
29 H 0.074 0.926
30 H 0.072 0.928
31 H 0.075 0.925
32 H 0.380 0.620
33 H 0.079 0.921
34 H 0.075 0.925
35 H 0.076 0.924
36 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.377 -2.439 -1.602 3.764
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.366 4.366
3 C -0.063 4.063
4 C -0.154 4.154
5 O -0.331 6.331
6 Si 0.622 3.378
7 N -0.265 5.265
8 C -0.050 4.050
9 N -0.331 5.331
10 C 0.045 3.955
11 H 0.101 0.899
12 C -0.174 4.174
13 C -0.188 4.188
14 C 0.043 3.957
15 H 0.076 0.924
16 O -0.373 6.373
17 C -0.148 4.148
18 C -0.160 4.160
19 S 0.348 5.652
20 H 0.077 0.923
21 H 0.097 0.903
22 H 0.095 0.905
23 H 0.141 0.859
24 H 0.223 0.777
25 H -0.186 1.186
26 H -0.193 1.193
27 H 0.251 0.749
28 H 0.090 0.910
29 H 0.092 0.908
30 H 0.091 0.909
31 H 0.093 0.907
32 H 0.228 0.772
33 H 0.098 0.902
34 H 0.093 0.907
35 H 0.095 0.905
36 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 2.606 -2.450 -0.850 3.677
hybrid contribution -0.784 0.334 -0.080 0.856
sum 1.823 -2.116 -0.929 2.943
Atomic orbital electron populations
1.20139 0.86473 1.01649 1.03608 1.25135 1.01312 0.92877 1.17319
1.20072 0.86865 0.97125 1.02208 1.24468 0.91865 0.95387 1.03689
1.86623 1.28621 1.89015 1.28855 0.93636 0.86157 0.76399 0.81587
1.65736 1.16993 1.16426 1.27375 1.23272 0.91836 0.91405 0.98511
1.44030 1.01782 1.06912 1.80348 1.21209 0.98565 0.78907 0.96837
0.89859 1.22011 1.03229 0.95637 0.96529 1.22253 0.98548 0.95991
1.02055 1.21850 0.94977 0.81973 0.96866 0.92437 1.86524 1.94329
1.21815 1.34624 1.21404 1.03707 0.93925 0.95777 1.21720 0.95304
0.96658 1.02295 1.84011 0.96530 1.10543 1.74072 0.92320 0.90254
0.90541 0.85860 0.77677 1.18622 1.19267 0.74853 0.90957 0.90769
0.90934 0.90663 0.77207 0.90203 0.90667 0.90499 0.90027
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.03 8.91 36.01 0.32 0.29 16
2 C -0.24 -0.47 6.50 -36.02 -0.23 -0.71 16
3 C 0.07 0.17 5.92 -84.18 -0.50 -0.33 16
4 C -0.04 -0.06 2.94 36.01 0.11 0.05 16
5 O -0.53 -0.67 10.17 -35.23 -0.36 -1.03 16
6 Si 0.72 1.00 32.08 -169.99 -5.45 -4.46 16
7 N -0.54 -1.46 8.95 -11.36 -0.10 -1.56 16
8 C 0.32 0.46 8.22 -87.68 -0.72 -0.26 16
9 N -0.69 0.68 5.23 -55.78 -0.29 0.39 16
10 C 0.15 -0.33 2.40 -67.93 -0.16 -0.50 16
11 H 0.08 -0.13 7.26 -51.93 -0.38 -0.51 16
12 C -0.13 0.32 5.51 -26.73 -0.15 0.17 16
13 C -0.15 0.38 5.55 -26.72 -0.15 0.24 16
14 C 0.10 -0.20 3.47 -26.72 -0.09 -0.29 16
15 H 0.06 -0.14 8.14 -51.93 -0.42 -0.57 16
16 O -0.57 0.24 13.32 -35.23 -0.47 -0.23 16
17 C -0.11 0.22 5.57 -26.76 -0.15 0.07 16
18 C -0.12 0.38 5.39 -26.76 -0.14 0.24 16
19 S 0.10 0.10 21.68 -107.50 -2.33 -2.24 16
20 H 0.06 -0.01 8.14 -51.92 -0.42 -0.44 16
21 H 0.08 -0.02 6.39 -51.93 -0.33 -0.35 16
22 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16
23 H 0.12 0.08 7.96 -51.93 -0.41 -0.33 16
24 H 0.38 -0.41 8.13 45.56 0.37 -0.04 16
25 H -0.26 -0.94 7.11 56.52 0.40 -0.54 16
26 H -0.27 -1.11 7.11 56.52 0.40 -0.71 16
27 H 0.41 -0.81 8.73 -40.82 -0.36 -1.17 16
28 H 0.07 -0.10 8.04 -51.93 -0.42 -0.51 16
29 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16
30 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16
31 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16
32 H 0.38 -1.57 9.08 45.56 0.41 -1.16 16
33 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16
34 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16
35 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16
36 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16
LS Contribution 303.02 15.07 4.57 4.57
Total: 0.00 -5.72 303.02 -10.85 -16.57
By element:
Atomic # 1 Polarization: -6.45 SS G_CDS: -4.54 Total: -10.99 kcal
Atomic # 6 Polarization: 0.85 SS G_CDS: -1.87 Total: -1.02 kcal
Atomic # 7 Polarization: -0.78 SS G_CDS: -0.39 Total: -1.17 kcal
Atomic # 8 Polarization: -0.43 SS G_CDS: -0.83 Total: -1.26 kcal
Atomic # 14 Polarization: 1.00 SS G_CDS: -5.45 Total: -4.46 kcal
Atomic # 16 Polarization: 0.10 SS G_CDS: -2.33 Total: -2.24 kcal
Total LS contribution 4.57 Total: 4.57 kcal
Total: -5.72 -10.85 -16.57 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_27_7763798_15704122.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.796 kcal
(2) G-P(sol) polarization free energy of solvation -5.722 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.518 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.847 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.569 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.365 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds