Wall clock time and date at job start Mon Mar 8 2021 06:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86303 * 109.46873 * 2 1 4 4 C 1.86304 * 109.47239 * 240.00235 * 2 1 3 5 5 N 1.46496 * 109.46944 * 59.99774 * 4 2 1 6 6 C 1.38407 * 120.00235 * 95.00442 * 5 4 2 7 7 N 1.32496 * 119.21184 * 359.72755 * 6 5 4 8 8 C 1.32284 * 120.73585 * 179.72148 * 7 6 5 9 9 C 1.38607 * 119.19366 * 0.54142 * 8 7 6 10 10 C 1.50700 * 120.71653 * 179.71032 * 9 8 7 11 11 O 1.42898 * 109.47514 * 120.02074 * 10 9 8 12 12 Si 1.86307 * 109.47190 * 0.02562 * 10 9 8 13 13 H 1.48501 * 109.46926 * 59.99909 * 12 10 9 14 14 H 1.48496 * 109.47048 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47103 * 300.00283 * 12 10 9 16 16 C 1.38601 * 118.55917 * 359.73235 * 9 8 7 17 17 N 1.32270 * 119.19960 * 0.02562 * 16 9 8 18 18 C 1.86801 * 109.47324 * 120.00079 * 2 1 3 19 19 C 1.38238 * 119.99838 * 270.00310 * 18 2 1 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 2 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00134 * 89.97990 * 18 2 1 24 24 H 1.08999 * 109.47284 * 299.99825 * 1 2 3 25 25 H 1.08992 * 109.46964 * 60.00131 * 1 2 3 26 26 H 1.09001 * 109.46710 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47089 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47226 * 299.99714 * 3 2 1 29 29 H 1.08999 * 109.47023 * 60.00015 * 3 2 1 30 30 H 1.08997 * 109.46881 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.47082 * 299.99845 * 4 2 1 32 32 H 0.97003 * 119.99975 * 274.99586 * 5 4 2 33 33 H 1.08003 * 120.39789 * 180.25122 * 8 7 6 34 34 H 1.08998 * 109.47247 * 240.02479 * 10 9 8 35 35 H 0.96695 * 113.99912 * 300.00596 * 11 10 9 36 36 H 1.08006 * 120.39248 * 179.97438 * 16 9 8 37 37 H 1.08005 * 120.00068 * 359.97415 * 19 18 2 38 38 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.00391 * 179.72199 * 22 21 20 41 41 H 1.07999 * 119.99968 * 359.97438 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5212 5 7 1.9957 -0.1875 -2.7173 6 6 2.7892 0.7585 -3.3427 7 7 3.9857 1.0312 -2.8432 8 6 4.7711 1.9259 -3.4198 9 6 4.3239 2.5882 -4.5523 10 6 5.1877 3.6186 -5.2329 11 8 5.4435 3.2120 -6.5787 12 14 6.8014 3.7799 -4.3158 13 1 7.5020 2.4706 -4.3127 14 1 7.6527 4.7948 -4.9868 15 1 6.5357 4.2024 -2.9172 16 6 3.0650 2.2826 -5.0448 17 7 2.3319 1.3740 -4.4231 18 6 2.4857 -0.8806 1.5252 19 6 2.7161 -0.1696 2.6881 20 6 3.1764 -0.8214 3.8169 21 6 3.4058 -2.1841 3.7830 22 6 3.1806 -2.8942 2.6186 23 6 2.7158 -2.2432 1.4911 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.5740 1.7565 0.0005 28 1 2.1206 2.2703 -0.8900 29 1 2.1206 2.2703 0.8900 30 1 3.5740 -0.8785 -1.5209 31 1 2.1208 -1.9058 -1.5212 32 1 1.1162 -0.3933 -3.0710 33 1 5.7471 2.1411 -3.0103 34 1 4.6734 4.5796 -5.2352 35 1 5.9000 2.3629 -6.6530 36 1 2.6868 2.7811 -5.9252 37 1 2.5364 0.8950 2.7148 38 1 3.3568 -0.2659 4.7254 39 1 3.7651 -2.6934 4.6651 40 1 3.3641 -3.9581 2.5907 41 1 2.5351 -2.7988 0.5827 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_8986900_12175864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:53:00 Heat of formation + Delta-G solvation = 11.988389 kcal Electronic energy + Delta-G solvation = -21887.563536 eV Core-core repulsion = 18698.137566 eV Total energy + Delta-G solvation = -3189.425970 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 303.127 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.00808 -39.67310 -38.23048 -36.66186 -34.64260 -32.51779 -31.75407 -31.57710 -29.17529 -28.45177 -27.88713 -26.06299 -25.23204 -23.28205 -23.03015 -22.85528 -19.63584 -18.62987 -18.12343 -17.92680 -16.61136 -16.33580 -16.16290 -16.02103 -15.81614 -15.68379 -15.46248 -14.75067 -14.49479 -14.36626 -14.28628 -14.19017 -13.91338 -13.82465 -13.49975 -13.27367 -13.13627 -13.03164 -12.94441 -12.32072 -12.27563 -12.19458 -11.93489 -11.73856 -11.66044 -11.06012 -10.87859 -10.79953 -10.52535 -9.93038 -9.74585 -9.70694 -8.79439 0.10711 0.22489 0.39110 0.57681 1.10214 1.37934 1.44036 1.52814 1.62154 1.86958 1.89994 2.06204 2.44659 2.92314 3.01154 3.20493 3.42884 3.65111 3.76197 3.85867 4.07272 4.16751 4.23297 4.25798 4.30840 4.58310 4.59229 4.66253 4.68345 4.70510 4.75381 4.77299 4.80254 4.91927 5.07008 5.18123 5.24189 5.43665 5.53666 5.59377 5.63049 5.68219 5.80758 6.06331 6.18568 6.43470 6.50039 7.35553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 1.061 2.939 3 C -0.438 4.438 4 C -0.166 4.166 5 N -0.677 5.677 6 C 0.563 3.437 7 N -0.557 5.557 8 C 0.191 3.809 9 C -0.298 4.298 10 C -0.057 4.057 11 O -0.539 6.539 12 Si 0.937 3.063 13 H -0.249 1.249 14 H -0.248 1.248 15 H -0.248 1.248 16 C 0.226 3.774 17 N -0.570 5.570 18 C -0.371 4.371 19 C -0.088 4.088 20 C -0.132 4.132 21 C -0.110 4.110 22 C -0.132 4.132 23 C -0.091 4.091 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.417 0.583 33 H 0.159 0.841 34 H 0.119 0.881 35 H 0.376 0.624 36 H 0.172 0.828 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 -0.340 0.771 0.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.250 2.750 3 C -0.546 4.546 4 C -0.338 4.338 5 N -0.312 5.312 6 C 0.207 3.793 7 N -0.280 5.280 8 C 0.023 3.977 9 C -0.307 4.307 10 C -0.170 4.170 11 O -0.344 6.344 12 Si 0.759 3.241 13 H -0.173 1.173 14 H -0.172 1.172 15 H -0.171 1.171 16 C 0.057 3.943 17 N -0.292 5.292 18 C -0.414 4.414 19 C -0.106 4.106 20 C -0.150 4.150 21 C -0.128 4.128 22 C -0.150 4.150 23 C -0.109 4.109 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.255 0.745 33 H 0.176 0.824 34 H 0.137 0.863 35 H 0.223 0.777 36 H 0.189 0.811 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.304 -0.578 1.775 1.891 hybrid contribution 0.124 -0.178 -0.399 0.454 sum 0.429 -0.756 1.376 1.628 Atomic orbital electron populations 1.26109 1.20131 1.04665 1.04685 0.78420 0.67050 0.66947 0.62548 1.26032 1.06829 1.17944 1.03797 1.26479 1.06812 1.01845 0.98635 1.43608 1.18545 1.39928 1.29168 1.19366 0.86123 0.87737 0.86107 1.67863 1.05332 1.20451 1.34339 1.22788 0.97444 0.87724 0.89714 1.21662 1.00332 1.06464 1.02202 1.24602 1.06305 0.98227 0.87834 1.86517 1.81092 1.42695 1.24107 0.85869 0.76803 0.81949 0.79484 1.17276 1.17201 1.17139 1.22814 0.88155 0.88116 0.95175 1.67983 1.37703 1.13004 1.10512 1.27232 1.04695 0.99481 1.09949 1.21072 0.97046 0.99595 0.92852 1.21276 1.00182 0.94893 0.98641 1.21233 0.98996 0.94535 0.98031 1.21266 1.00186 0.99915 0.93615 1.21066 0.97373 0.94544 0.97868 0.90937 0.91011 0.91012 0.90606 0.91764 0.91429 0.87896 0.89902 0.74535 0.82400 0.86301 0.77674 0.81139 0.86292 0.86301 0.86253 0.86289 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.61 8.65 101.05 0.87 1.49 16 2 Si 1.06 -1.96 11.38 -169.99 -1.93 -3.89 16 3 C -0.44 0.07 8.53 101.05 0.86 0.93 16 4 C -0.17 0.24 5.19 59.84 0.31 0.55 16 5 N -0.68 0.11 4.82 -10.30 -0.05 0.06 16 6 C 0.56 1.17 8.31 -322.81 -2.68 -1.51 16 7 N -0.56 -1.13 9.04 -13.93 -0.13 -1.26 16 8 C 0.19 0.13 9.92 -17.22 -0.17 -0.04 16 9 C -0.30 0.03 5.40 -104.35 -0.56 -0.53 16 10 C -0.06 0.09 2.85 36.01 0.10 0.19 16 11 O -0.54 0.44 12.79 -35.23 -0.45 -0.01 16 12 Si 0.94 -1.40 25.15 -169.99 -4.28 -5.68 16 13 H -0.25 0.31 7.11 56.52 0.40 0.71 16 14 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 15 H -0.25 0.24 7.11 56.52 0.40 0.64 16 16 C 0.23 0.17 10.92 -17.23 -0.19 -0.02 16 17 N -0.57 -1.37 10.46 -13.93 -0.15 -1.51 16 18 C -0.37 -0.04 4.59 -39.58 -0.18 -0.22 16 19 C -0.09 -0.07 9.29 -39.58 -0.37 -0.44 16 20 C -0.13 -0.15 10.05 -39.58 -0.40 -0.55 16 21 C -0.11 -0.12 10.05 -39.58 -0.40 -0.52 16 22 C -0.13 -0.11 10.05 -39.58 -0.40 -0.51 16 23 C -0.09 -0.02 9.29 -39.58 -0.37 -0.39 16 24 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 25 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 0.04 7.96 -51.93 -0.41 -0.37 16 28 H 0.06 0.07 7.96 -51.93 -0.41 -0.35 16 29 H 0.07 -0.05 7.69 -51.93 -0.40 -0.45 16 30 H 0.10 -0.03 7.00 -51.93 -0.36 -0.39 16 31 H 0.08 -0.27 7.69 -51.93 -0.40 -0.67 16 32 H 0.42 -0.63 8.94 -40.82 -0.37 -1.00 16 33 H 0.16 -0.18 5.04 -52.48 -0.26 -0.44 16 34 H 0.12 -0.30 7.96 -51.93 -0.41 -0.71 16 35 H 0.38 -1.38 8.70 45.56 0.40 -0.99 16 36 H 0.17 -0.19 8.06 -52.48 -0.42 -0.62 16 37 H 0.12 -0.10 7.43 -52.48 -0.39 -0.49 16 38 H 0.12 -0.05 8.06 -52.49 -0.42 -0.48 16 39 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 40 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 41 H 0.12 -0.25 7.43 -52.49 -0.39 -0.64 16 LS Contribution 347.98 15.07 5.24 5.24 Total: 0.00 -6.53 347.98 -10.45 -16.98 By element: Atomic # 1 Polarization: -3.21 SS G_CDS: -5.14 Total: -8.35 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -3.57 Total: -1.57 kcal Atomic # 7 Polarization: -2.40 SS G_CDS: -0.32 Total: -2.72 kcal Atomic # 8 Polarization: 0.44 SS G_CDS: -0.45 Total: -0.01 kcal Atomic # 14 Polarization: -3.36 SS G_CDS: -6.21 Total: -9.57 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -6.53 -10.45 -16.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_8986900_12175864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.964 kcal (2) G-P(sol) polarization free energy of solvation -6.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds