Wall clock time and date at job start Mon Mar 8 2021 06:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86303 * 109.46873 * 2 1 4 4 C 1.86304 * 109.47239 * 240.00235 * 2 1 3 5 5 N 1.46496 * 109.46944 * 59.99774 * 4 2 1 6 6 C 1.38407 * 120.00235 * 95.00442 * 5 4 2 7 7 N 1.32496 * 119.21184 * 359.72755 * 6 5 4 8 8 C 1.32284 * 120.73585 * 179.72148 * 7 6 5 9 9 C 1.38607 * 119.19366 * 0.54142 * 8 7 6 10 10 C 1.50700 * 120.71653 * 179.71032 * 9 8 7 11 11 O 1.42898 * 109.47514 * 120.02074 * 10 9 8 12 12 Si 1.86307 * 109.47190 * 0.02562 * 10 9 8 13 13 H 1.48501 * 109.46926 * 59.99909 * 12 10 9 14 14 H 1.48496 * 109.47048 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47103 * 300.00283 * 12 10 9 16 16 C 1.38601 * 118.55917 * 359.73235 * 9 8 7 17 17 N 1.32270 * 119.19960 * 0.02562 * 16 9 8 18 18 C 1.86801 * 109.47324 * 120.00079 * 2 1 3 19 19 C 1.38238 * 119.99838 * 270.00310 * 18 2 1 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 2 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00134 * 89.97990 * 18 2 1 24 24 H 1.08999 * 109.47284 * 299.99825 * 1 2 3 25 25 H 1.08992 * 109.46964 * 60.00131 * 1 2 3 26 26 H 1.09001 * 109.46710 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47089 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47226 * 299.99714 * 3 2 1 29 29 H 1.08999 * 109.47023 * 60.00015 * 3 2 1 30 30 H 1.08997 * 109.46881 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.47082 * 299.99845 * 4 2 1 32 32 H 0.97003 * 119.99975 * 274.99586 * 5 4 2 33 33 H 1.08003 * 120.39789 * 180.25122 * 8 7 6 34 34 H 1.08998 * 109.47247 * 240.02479 * 10 9 8 35 35 H 0.96695 * 113.99912 * 300.00596 * 11 10 9 36 36 H 1.08006 * 120.39248 * 179.97438 * 16 9 8 37 37 H 1.08005 * 120.00068 * 359.97415 * 19 18 2 38 38 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.00391 * 179.72199 * 22 21 20 41 41 H 1.07999 * 119.99968 * 359.97438 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5212 5 7 1.9957 -0.1875 -2.7173 6 6 2.7892 0.7585 -3.3427 7 7 3.9857 1.0312 -2.8432 8 6 4.7711 1.9259 -3.4198 9 6 4.3239 2.5882 -4.5523 10 6 5.1877 3.6186 -5.2329 11 8 5.4435 3.2120 -6.5787 12 14 6.8014 3.7799 -4.3158 13 1 7.5020 2.4706 -4.3127 14 1 7.6527 4.7948 -4.9868 15 1 6.5357 4.2024 -2.9172 16 6 3.0650 2.2826 -5.0448 17 7 2.3319 1.3740 -4.4231 18 6 2.4857 -0.8806 1.5252 19 6 2.7161 -0.1696 2.6881 20 6 3.1764 -0.8214 3.8169 21 6 3.4058 -2.1841 3.7830 22 6 3.1806 -2.8942 2.6186 23 6 2.7158 -2.2432 1.4911 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.5740 1.7565 0.0005 28 1 2.1206 2.2703 -0.8900 29 1 2.1206 2.2703 0.8900 30 1 3.5740 -0.8785 -1.5209 31 1 2.1208 -1.9058 -1.5212 32 1 1.1162 -0.3933 -3.0710 33 1 5.7471 2.1411 -3.0103 34 1 4.6734 4.5796 -5.2352 35 1 5.9000 2.3629 -6.6530 36 1 2.6868 2.7811 -5.9252 37 1 2.5364 0.8950 2.7148 38 1 3.3568 -0.2659 4.7254 39 1 3.7651 -2.6934 4.6651 40 1 3.3641 -3.9581 2.5907 41 1 2.5351 -2.7988 0.5827 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_8986900_12175864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:52:59 Heat of formation + Delta-G solvation = 19.886764 kcal Electronic energy + Delta-G solvation = -21887.221036 eV Core-core repulsion = 18698.137566 eV Total energy + Delta-G solvation = -3189.083471 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 303.127 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.02536 -39.65174 -38.15569 -36.60654 -34.68608 -32.49255 -31.74083 -31.56234 -29.10405 -28.38719 -27.82113 -26.04004 -25.20164 -23.27524 -23.02018 -22.84538 -19.62826 -18.62047 -18.06063 -17.90247 -16.58218 -16.28648 -16.12591 -15.98542 -15.74368 -15.67116 -15.44002 -14.71170 -14.42889 -14.33094 -14.25898 -14.13512 -13.88821 -13.73201 -13.46492 -13.21778 -13.09080 -12.97506 -12.88917 -12.27172 -12.21392 -12.15139 -11.90049 -11.80161 -11.61972 -10.98550 -10.83412 -10.76046 -10.46905 -9.95029 -9.76021 -9.70571 -8.75277 0.08690 0.19556 0.39344 0.56161 1.21412 1.48209 1.53034 1.60510 1.74452 1.95106 2.00472 2.13355 2.52105 2.88959 3.00619 3.21679 3.58772 3.69010 3.78837 3.90499 4.11172 4.20659 4.28621 4.29844 4.44167 4.62055 4.71412 4.72697 4.73556 4.78428 4.79485 4.79825 4.82864 5.04036 5.08462 5.20572 5.27781 5.50905 5.58775 5.59243 5.63628 5.66689 5.80763 6.10550 6.20564 6.45877 6.73999 7.33978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.125 2.875 3 C -0.452 4.452 4 C -0.173 4.173 5 N -0.673 5.673 6 C 0.548 3.452 7 N -0.571 5.571 8 C 0.179 3.821 9 C -0.292 4.292 10 C -0.051 4.051 11 O -0.551 6.551 12 Si 0.966 3.034 13 H -0.251 1.251 14 H -0.270 1.270 15 H -0.255 1.255 16 C 0.217 3.783 17 N -0.589 5.589 18 C -0.381 4.381 19 C -0.105 4.105 20 C -0.150 4.150 21 C -0.127 4.127 22 C -0.147 4.147 23 C -0.101 4.101 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.423 0.577 33 H 0.172 0.828 34 H 0.130 0.870 35 H 0.388 0.612 36 H 0.186 0.814 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.040 -0.742 0.332 0.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.309 2.691 3 C -0.558 4.558 4 C -0.344 4.344 5 N -0.309 5.309 6 C 0.191 3.809 7 N -0.294 5.294 8 C 0.012 3.988 9 C -0.300 4.300 10 C -0.163 4.163 11 O -0.358 6.358 12 Si 0.790 3.210 13 H -0.175 1.175 14 H -0.195 1.195 15 H -0.179 1.179 16 C 0.049 3.951 17 N -0.312 5.312 18 C -0.422 4.422 19 C -0.123 4.123 20 C -0.168 4.168 21 C -0.145 4.145 22 C -0.165 4.165 23 C -0.119 4.119 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.261 0.739 33 H 0.188 0.812 34 H 0.148 0.852 35 H 0.237 0.763 36 H 0.203 0.797 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.024 -0.987 1.349 1.672 hybrid contribution 0.245 -0.032 -0.254 0.354 sum 0.269 -1.019 1.096 1.520 Atomic orbital electron populations 1.26194 1.20492 1.05134 1.04541 0.77460 0.65968 0.64603 0.61020 1.26243 1.06332 1.19923 1.03286 1.26616 1.06323 1.03190 0.98298 1.43687 1.18594 1.39384 1.29199 1.19623 0.86513 0.88317 0.86421 1.67883 1.05614 1.21103 1.34804 1.23105 0.97935 0.87680 0.90101 1.21746 1.00149 1.06318 1.01797 1.24603 1.05993 0.98224 0.87479 1.86490 1.81323 1.43661 1.24309 0.85455 0.76114 0.80874 0.78522 1.17503 1.19489 1.17933 1.23142 0.88449 0.87935 0.95560 1.68005 1.38373 1.13792 1.11029 1.27666 1.04301 0.99773 1.10507 1.21355 0.97343 1.00396 0.93196 1.21525 1.00608 0.95284 0.99336 1.21481 0.99427 0.94808 0.98776 1.21567 1.00318 1.00792 0.93838 1.21433 0.96940 0.94844 0.98647 0.91336 0.90920 0.90247 0.91491 0.92997 0.91142 0.88879 0.87612 0.73868 0.81173 0.85244 0.76338 0.79683 0.85272 0.85441 0.85309 0.85018 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.52 8.65 113.37 0.98 2.50 16 2 Si 1.12 -4.42 11.38 68.60 0.78 -3.64 16 3 C -0.45 -0.18 8.53 113.37 0.97 0.79 16 4 C -0.17 0.61 5.19 127.77 0.66 1.27 16 5 N -0.67 0.32 4.82 -186.51 -0.90 -0.58 16 6 C 0.55 2.44 8.31 261.49 2.17 4.61 16 7 N -0.57 -2.57 9.04 -197.98 -1.79 -4.36 16 8 C 0.18 0.30 9.92 84.71 0.84 1.14 16 9 C -0.29 0.07 5.40 -19.69 -0.11 -0.04 16 10 C -0.05 0.18 2.85 71.24 0.20 0.38 16 11 O -0.55 1.19 12.79 -148.98 -1.90 -0.71 16 12 Si 0.97 -2.87 25.15 68.60 1.73 -1.14 16 13 H -0.25 0.68 7.11 99.48 0.71 1.39 16 14 H -0.27 -0.17 7.11 99.48 0.71 0.53 16 15 H -0.26 0.46 7.11 99.48 0.71 1.17 16 16 C 0.22 0.34 10.92 84.71 0.93 1.26 16 17 N -0.59 -2.99 10.46 -197.99 -2.07 -5.06 16 18 C -0.38 -0.04 4.59 22.27 0.10 0.06 16 19 C -0.11 -0.22 9.29 22.27 0.21 -0.01 16 20 C -0.15 -0.45 10.05 22.27 0.22 -0.23 16 21 C -0.13 -0.36 10.05 22.27 0.22 -0.13 16 22 C -0.15 -0.26 10.05 22.27 0.22 -0.03 16 23 C -0.10 0.00 9.29 22.27 0.21 0.20 16 24 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 25 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 26 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 27 H 0.07 0.14 7.96 -2.38 -0.02 0.12 16 28 H 0.05 0.16 7.96 -2.39 -0.02 0.14 16 29 H 0.07 -0.05 7.69 -2.39 -0.02 -0.07 16 30 H 0.09 -0.07 7.00 -2.39 -0.02 -0.09 16 31 H 0.11 -0.86 7.69 -2.39 -0.02 -0.88 16 32 H 0.42 -1.43 8.94 -92.71 -0.83 -2.26 16 33 H 0.17 -0.35 5.04 -2.91 -0.01 -0.36 16 34 H 0.13 -0.73 7.96 -2.39 -0.02 -0.75 16 35 H 0.39 -3.02 8.70 -74.06 -0.64 -3.67 16 36 H 0.19 -0.47 8.06 -2.91 -0.02 -0.49 16 37 H 0.13 -0.15 7.43 -2.91 -0.02 -0.17 16 38 H 0.13 0.00 8.06 -2.91 -0.02 -0.03 16 39 H 0.13 -0.05 8.06 -2.91 -0.02 -0.07 16 40 H 0.13 -0.24 8.06 -2.91 -0.02 -0.26 16 41 H 0.14 -0.79 7.43 -2.91 -0.02 -0.81 16 Total: 0.00 -15.07 347.98 4.01 -11.06 By element: Atomic # 1 Polarization: -7.67 SS G_CDS: 0.33 Total: -7.35 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 7.83 Total: 11.78 kcal Atomic # 7 Polarization: -5.24 SS G_CDS: -4.76 Total: -10.00 kcal Atomic # 8 Polarization: 1.19 SS G_CDS: -1.90 Total: -0.71 kcal Atomic # 14 Polarization: -7.29 SS G_CDS: 2.51 Total: -4.78 kcal Total: -15.07 4.01 -11.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_8986900_12175864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.950 kcal (2) G-P(sol) polarization free energy of solvation -15.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds