Wall clock time and date at job start Mon Mar 8 2021 06:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86302 * 109.46646 * 2 1 4 4 C 1.86297 * 109.47112 * 119.99805 * 2 1 3 5 5 N 1.46499 * 109.47571 * 300.00507 * 4 2 1 6 6 C 1.39003 * 120.00532 * 94.99773 * 5 4 2 7 7 C 1.39099 * 119.70110 * 0.02562 * 6 5 4 8 8 C 1.38345 * 119.09556 * 180.02562 * 7 6 5 9 9 C 1.38838 * 118.50628 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.33318 * 180.02562 * 9 8 7 11 11 O 1.42898 * 109.47150 * 65.00290 * 10 9 8 12 12 Si 1.86302 * 109.46827 * 184.99853 * 10 9 8 13 13 H 1.48499 * 109.47057 * 60.00655 * 12 10 9 14 14 H 1.48506 * 109.46804 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47216 * 300.00146 * 12 10 9 16 16 C 1.38067 * 119.32758 * 0.02562 * 9 8 7 17 17 N 1.31940 * 120.85527 * 0.02562 * 16 9 8 18 18 C 1.86793 * 109.47002 * 240.00122 * 2 1 3 19 19 C 1.38243 * 119.99892 * 149.72626 * 18 2 1 20 20 C 1.38236 * 119.99981 * 179.76617 * 19 18 2 21 21 C 1.38238 * 119.99998 * 0.50453 * 20 19 18 22 22 C 1.38239 * 119.99778 * 359.75024 * 21 20 19 23 23 C 1.38234 * 120.00335 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47001 * 299.99620 * 1 2 3 25 25 H 1.08995 * 109.47223 * 60.00318 * 1 2 3 26 26 H 1.09007 * 109.46803 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46882 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47495 * 300.00054 * 3 2 1 29 29 H 1.09004 * 109.47349 * 60.00559 * 3 2 1 30 30 H 1.09003 * 109.46890 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.46924 * 60.00061 * 4 2 1 32 32 H 0.97007 * 119.99513 * 274.99956 * 5 4 2 33 33 H 1.07994 * 120.45153 * 0.27264 * 7 6 5 34 34 H 1.08001 * 120.74372 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47327 * 305.00071 * 10 9 8 36 36 H 0.96704 * 114.00140 * 59.99430 * 11 10 9 37 37 H 1.07996 * 119.56789 * 179.97438 * 16 9 8 38 38 H 1.08002 * 119.99413 * 0.02562 * 19 18 2 39 39 H 1.07992 * 119.99847 * 180.23086 * 20 19 18 40 40 H 1.07997 * 119.99981 * 179.72611 * 21 20 19 41 41 H 1.07998 * 119.99558 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00347 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 1.5211 5 7 1.9957 -0.1877 2.7173 6 6 0.8343 -0.6223 3.3454 7 6 0.1410 -1.7140 2.8332 8 6 -1.0137 -2.1357 3.4679 9 6 -1.4371 -1.4491 4.5979 10 6 -2.6888 -1.8736 5.3219 11 8 -2.4996 -3.1769 5.8765 12 14 -3.0552 -0.6636 6.6903 13 1 -3.2520 0.6908 6.1140 14 1 -4.2884 -1.0823 7.4041 15 1 -1.9172 -0.6354 7.6440 16 6 -0.6998 -0.3736 5.0517 17 7 0.3974 0.0071 4.4254 18 6 2.4857 -0.8805 -1.5252 19 6 3.6909 -0.5113 -2.0929 20 6 4.1540 -1.1662 -3.2187 21 6 3.4069 -2.1832 -3.7831 22 6 2.1992 -2.5489 -3.2185 23 6 1.7388 -1.8979 -2.0893 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.5739 1.7566 -0.0005 28 1 2.1206 2.2703 -0.8899 29 1 2.1206 2.2703 0.8900 30 1 3.5741 -0.8777 1.5213 31 1 2.1207 -1.9058 1.5211 32 1 2.4828 0.5730 3.0711 33 1 0.5013 -2.2279 1.9543 34 1 -1.5726 -2.9804 3.0933 35 1 -3.5241 -1.8943 4.6219 36 1 -1.7708 -3.2329 6.5096 37 1 -1.0258 0.1635 5.9300 38 1 4.2726 0.2859 -1.6542 39 1 5.0973 -0.8803 -3.6600 40 1 3.7666 -2.6919 -4.6653 41 1 1.6154 -3.3432 -3.6597 42 1 0.7951 -2.1832 -1.6485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_8986900_13915762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:53:10 Heat of formation + Delta-G solvation = -4.477872 kcal Electronic energy + Delta-G solvation = -21711.573325 eV Core-core repulsion = 18586.859235 eV Total energy + Delta-G solvation = -3124.714089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31929 -39.72001 -38.10291 -36.49977 -33.40472 -31.83947 -31.64223 -31.56548 -29.22821 -28.52686 -27.71047 -25.48401 -24.59272 -23.28435 -23.01787 -22.31335 -18.83134 -18.58289 -18.06127 -17.43817 -16.64409 -16.18341 -16.03871 -15.74409 -15.65732 -15.60508 -15.32312 -14.85994 -14.42933 -14.34439 -14.24207 -14.04598 -13.96913 -13.61772 -13.59243 -13.30920 -13.30511 -13.11476 -12.98722 -12.35453 -12.25252 -12.13234 -11.99044 -11.87323 -11.02229 -10.98193 -10.79407 -10.54183 -10.34907 -10.28228 -9.79205 -9.77575 -8.46077 0.25684 0.34337 0.49509 0.53079 1.19903 1.45929 1.53601 1.55220 1.63451 1.69091 1.94902 2.26914 2.37909 2.94310 2.96244 3.52985 3.62225 3.83917 4.03314 4.06367 4.07337 4.13466 4.20902 4.22312 4.35057 4.54231 4.59298 4.61224 4.63829 4.64690 4.70341 4.71177 4.75972 4.84062 5.02310 5.06848 5.13870 5.35608 5.39369 5.46315 5.54203 5.55483 5.58780 5.63929 6.01820 6.13947 6.55012 6.59647 7.21273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 1.054 2.946 3 C -0.447 4.447 4 C -0.170 4.170 5 N -0.705 5.705 6 C 0.406 3.594 7 C -0.240 4.240 8 C -0.002 4.002 9 C -0.239 4.239 10 C -0.064 4.064 11 O -0.541 6.541 12 Si 0.941 3.059 13 H -0.249 1.249 14 H -0.253 1.253 15 H -0.250 1.250 16 C 0.148 3.852 17 N -0.541 5.541 18 C -0.375 4.375 19 C -0.089 4.089 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.132 4.132 23 C -0.088 4.088 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.408 0.592 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.375 0.625 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 -0.151 -1.651 2.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.552 4.552 2 Si 1.243 2.757 3 C -0.555 4.555 4 C -0.341 4.341 5 N -0.337 5.337 6 C 0.170 3.830 7 C -0.265 4.265 8 C -0.028 4.028 9 C -0.244 4.244 10 C -0.176 4.176 11 O -0.346 6.346 12 Si 0.764 3.236 13 H -0.172 1.172 14 H -0.176 1.176 15 H -0.174 1.174 16 C -0.010 4.010 17 N -0.258 5.258 18 C -0.418 4.418 19 C -0.107 4.107 20 C -0.151 4.151 21 C -0.127 4.127 22 C -0.150 4.150 23 C -0.106 4.106 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.244 0.756 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.222 0.778 37 H 0.165 0.835 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.043 0.848 -1.269 1.848 hybrid contribution 0.480 -0.689 -0.474 0.965 sum 1.523 0.159 -1.743 2.320 Atomic orbital electron populations 1.26111 1.19672 1.04689 1.04691 0.78536 0.67630 0.66946 0.62560 1.26083 1.06217 1.18246 1.04947 1.26577 1.04309 1.03925 0.99309 1.43972 1.24978 1.35502 1.29248 1.18391 0.86988 0.89154 0.88485 1.21488 0.99220 1.00729 1.05068 1.21179 0.93466 0.96447 0.91729 1.20925 1.01420 1.01132 1.00970 1.24697 0.97183 0.92194 1.03505 1.86505 1.56615 1.28812 1.62678 0.85823 0.81344 0.78198 0.78273 1.17215 1.17642 1.17404 1.22231 0.89065 0.92805 0.96858 1.67135 1.16486 1.32498 1.09694 1.27251 0.98897 1.03331 1.12337 1.21102 0.95748 0.98446 0.95357 1.21283 1.00009 0.96876 0.96888 1.21254 0.94897 0.97013 0.99491 1.21287 0.96628 1.00282 0.96842 1.21098 0.99008 0.95156 0.95329 0.90979 0.90954 0.91045 0.91053 0.90805 0.90790 0.89506 0.89300 0.75605 0.84657 0.84561 0.86682 0.77755 0.83517 0.86233 0.86272 0.86217 0.86252 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.68 8.07 101.05 0.82 1.49 16 2 Si 1.05 -3.09 11.22 -169.99 -1.91 -5.00 16 3 C -0.45 0.94 8.52 101.05 0.86 1.80 16 4 C -0.17 0.43 5.15 59.85 0.31 0.74 16 5 N -0.71 0.51 4.85 -8.64 -0.04 0.47 16 6 C 0.41 0.58 7.54 -155.02 -1.17 -0.59 16 7 C -0.24 -0.09 8.69 -39.22 -0.34 -0.43 16 8 C 0.00 0.00 9.83 -39.32 -0.39 -0.39 16 9 C -0.24 -0.17 5.36 -104.46 -0.56 -0.73 16 10 C -0.06 0.03 2.82 36.00 0.10 0.13 16 11 O -0.54 -0.15 12.84 -35.23 -0.45 -0.61 16 12 Si 0.94 -0.47 25.16 -169.99 -4.28 -4.75 16 13 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 14 H -0.25 -0.24 7.11 56.52 0.40 0.17 16 15 H -0.25 0.08 7.05 56.52 0.40 0.47 16 16 C 0.15 0.26 9.84 -17.57 -0.17 0.09 16 17 N -0.54 -1.59 10.39 -12.44 -0.13 -1.72 16 18 C -0.38 0.30 4.59 -39.58 -0.18 0.12 16 19 C -0.09 0.02 9.29 -39.58 -0.37 -0.35 16 20 C -0.13 -0.06 10.05 -39.58 -0.40 -0.45 16 21 C -0.11 -0.06 10.05 -39.58 -0.40 -0.46 16 22 C -0.13 -0.06 10.05 -39.58 -0.40 -0.45 16 23 C -0.09 0.02 9.29 -39.58 -0.37 -0.35 16 24 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 25 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 26 H 0.07 -0.15 7.69 -51.93 -0.40 -0.54 16 27 H 0.07 -0.19 7.68 -51.93 -0.40 -0.59 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.09 -0.30 7.96 -51.93 -0.41 -0.72 16 31 H 0.09 -0.24 5.71 -51.93 -0.30 -0.54 16 32 H 0.41 -0.56 8.95 -40.82 -0.37 -0.93 16 33 H 0.14 -0.22 5.97 -52.49 -0.31 -0.53 16 34 H 0.14 -0.13 8.06 -52.49 -0.42 -0.56 16 35 H 0.12 -0.15 7.96 -51.93 -0.41 -0.56 16 36 H 0.38 -1.00 8.70 45.56 0.40 -0.60 16 37 H 0.15 0.05 4.87 -52.49 -0.26 -0.20 16 38 H 0.12 -0.26 7.42 -52.49 -0.39 -0.64 16 39 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 40 H 0.12 -0.11 8.06 -52.49 -0.42 -0.54 16 41 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 42 H 0.12 -0.25 7.43 -52.49 -0.39 -0.64 16 LS Contribution 349.30 15.07 5.26 5.26 Total: 0.00 -6.30 349.30 -9.58 -15.88 By element: Atomic # 1 Polarization: -4.33 SS G_CDS: -5.38 Total: -9.72 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -2.65 Total: 0.17 kcal Atomic # 7 Polarization: -1.08 SS G_CDS: -0.17 Total: -1.25 kcal Atomic # 8 Polarization: -0.15 SS G_CDS: -0.45 Total: -0.61 kcal Atomic # 14 Polarization: -3.56 SS G_CDS: -6.19 Total: -9.74 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -6.30 -9.58 -15.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_8986900_13915762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.403 kcal (2) G-P(sol) polarization free energy of solvation -6.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds