Wall clock time and date at job start Mon Mar 8 2021 06:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86302 * 109.46646 * 2 1 4 4 C 1.86297 * 109.47112 * 119.99805 * 2 1 3 5 5 N 1.46499 * 109.47571 * 300.00507 * 4 2 1 6 6 C 1.39003 * 120.00532 * 94.99773 * 5 4 2 7 7 C 1.39099 * 119.70110 * 0.02562 * 6 5 4 8 8 C 1.38345 * 119.09556 * 180.02562 * 7 6 5 9 9 C 1.38838 * 118.50628 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.33318 * 180.02562 * 9 8 7 11 11 O 1.42898 * 109.47150 * 65.00290 * 10 9 8 12 12 Si 1.86302 * 109.46827 * 184.99853 * 10 9 8 13 13 H 1.48499 * 109.47057 * 60.00655 * 12 10 9 14 14 H 1.48506 * 109.46804 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47216 * 300.00146 * 12 10 9 16 16 C 1.38067 * 119.32758 * 0.02562 * 9 8 7 17 17 N 1.31940 * 120.85527 * 0.02562 * 16 9 8 18 18 C 1.86793 * 109.47002 * 240.00122 * 2 1 3 19 19 C 1.38243 * 119.99892 * 149.72626 * 18 2 1 20 20 C 1.38236 * 119.99981 * 179.76617 * 19 18 2 21 21 C 1.38238 * 119.99998 * 0.50453 * 20 19 18 22 22 C 1.38239 * 119.99778 * 359.75024 * 21 20 19 23 23 C 1.38234 * 120.00335 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47001 * 299.99620 * 1 2 3 25 25 H 1.08995 * 109.47223 * 60.00318 * 1 2 3 26 26 H 1.09007 * 109.46803 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46882 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47495 * 300.00054 * 3 2 1 29 29 H 1.09004 * 109.47349 * 60.00559 * 3 2 1 30 30 H 1.09003 * 109.46890 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.46924 * 60.00061 * 4 2 1 32 32 H 0.97007 * 119.99513 * 274.99956 * 5 4 2 33 33 H 1.07994 * 120.45153 * 0.27264 * 7 6 5 34 34 H 1.08001 * 120.74372 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47327 * 305.00071 * 10 9 8 36 36 H 0.96704 * 114.00140 * 59.99430 * 11 10 9 37 37 H 1.07996 * 119.56789 * 179.97438 * 16 9 8 38 38 H 1.08002 * 119.99413 * 0.02562 * 19 18 2 39 39 H 1.07992 * 119.99847 * 180.23086 * 20 19 18 40 40 H 1.07997 * 119.99981 * 179.72611 * 21 20 19 41 41 H 1.07998 * 119.99558 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00347 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 1.5211 5 7 1.9957 -0.1877 2.7173 6 6 0.8343 -0.6223 3.3454 7 6 0.1410 -1.7140 2.8332 8 6 -1.0137 -2.1357 3.4679 9 6 -1.4371 -1.4491 4.5979 10 6 -2.6888 -1.8736 5.3219 11 8 -2.4996 -3.1769 5.8765 12 14 -3.0552 -0.6636 6.6903 13 1 -3.2520 0.6908 6.1140 14 1 -4.2884 -1.0823 7.4041 15 1 -1.9172 -0.6354 7.6440 16 6 -0.6998 -0.3736 5.0517 17 7 0.3974 0.0071 4.4254 18 6 2.4857 -0.8805 -1.5252 19 6 3.6909 -0.5113 -2.0929 20 6 4.1540 -1.1662 -3.2187 21 6 3.4069 -2.1832 -3.7831 22 6 2.1992 -2.5489 -3.2185 23 6 1.7388 -1.8979 -2.0893 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.5739 1.7566 -0.0005 28 1 2.1206 2.2703 -0.8899 29 1 2.1206 2.2703 0.8900 30 1 3.5741 -0.8777 1.5213 31 1 2.1207 -1.9058 1.5211 32 1 2.4828 0.5730 3.0711 33 1 0.5013 -2.2279 1.9543 34 1 -1.5726 -2.9804 3.0933 35 1 -3.5241 -1.8943 4.6219 36 1 -1.7708 -3.2329 6.5096 37 1 -1.0258 0.1635 5.9300 38 1 4.2726 0.2859 -1.6542 39 1 5.0973 -0.8803 -3.6600 40 1 3.7666 -2.6919 -4.6653 41 1 1.6154 -3.3432 -3.6597 42 1 0.7951 -2.1832 -1.6485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_8986900_13915762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:53:09 Heat of formation + Delta-G solvation = 2.855582 kcal Electronic energy + Delta-G solvation = -21711.255322 eV Core-core repulsion = 18586.859235 eV Total energy + Delta-G solvation = -3124.396087 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.32300 -39.64092 -38.06806 -36.44206 -33.41902 -31.76718 -31.57611 -31.52840 -29.06794 -28.36730 -27.61490 -25.40997 -24.60273 -23.21870 -22.95567 -22.29715 -18.78387 -18.56900 -17.98098 -17.41976 -16.61871 -16.14980 -15.95728 -15.69869 -15.58077 -15.55247 -15.26122 -14.85125 -14.32368 -14.24620 -14.17010 -13.96427 -13.85432 -13.52444 -13.48903 -13.26715 -13.18021 -12.94013 -12.87780 -12.32984 -12.18338 -12.10745 -11.90957 -11.88155 -10.87772 -10.84705 -10.78012 -10.50633 -10.35475 -10.28306 -9.74893 -9.71957 -8.39922 0.26174 0.37813 0.48891 0.57335 1.23779 1.47977 1.54871 1.71029 1.83676 1.88735 1.94888 2.37762 2.53507 2.92450 3.01260 3.60941 3.65187 3.86459 4.08536 4.12916 4.17488 4.22163 4.30888 4.37008 4.39939 4.63020 4.66285 4.72754 4.79775 4.80592 4.82127 4.84073 4.84211 5.01270 5.09191 5.09632 5.22054 5.37763 5.55432 5.57251 5.58098 5.62235 5.67413 5.68781 6.08451 6.21726 6.60469 6.75642 7.21027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.458 4.458 2 Si 1.123 2.877 3 C -0.461 4.461 4 C -0.179 4.179 5 N -0.702 5.702 6 C 0.393 3.607 7 C -0.243 4.243 8 C -0.009 4.009 9 C -0.241 4.241 10 C -0.058 4.058 11 O -0.554 6.554 12 Si 0.971 3.029 13 H -0.259 1.259 14 H -0.273 1.273 15 H -0.254 1.254 16 C 0.132 3.868 17 N -0.569 5.569 18 C -0.384 4.384 19 C -0.102 4.102 20 C -0.150 4.150 21 C -0.127 4.127 22 C -0.150 4.150 23 C -0.101 4.101 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.410 0.590 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.124 0.876 36 H 0.387 0.613 37 H 0.152 0.848 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 -0.567 -1.805 2.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.308 2.692 3 C -0.568 4.568 4 C -0.349 4.349 5 N -0.334 5.334 6 C 0.156 3.844 7 C -0.267 4.267 8 C -0.035 4.035 9 C -0.246 4.246 10 C -0.170 4.170 11 O -0.360 6.360 12 Si 0.796 3.204 13 H -0.184 1.184 14 H -0.198 1.198 15 H -0.178 1.178 16 C -0.025 4.025 17 N -0.287 5.287 18 C -0.425 4.425 19 C -0.119 4.119 20 C -0.168 4.168 21 C -0.145 4.145 22 C -0.168 4.168 23 C -0.118 4.118 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.246 0.754 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.142 0.858 36 H 0.236 0.764 37 H 0.169 0.831 38 H 0.155 0.845 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.337 0.431 -1.438 2.010 hybrid contribution 0.407 -0.550 -0.451 0.819 sum 1.744 -0.118 -1.888 2.573 Atomic orbital electron populations 1.26305 1.21393 1.04907 1.03868 0.77483 0.65531 0.65353 0.60828 1.26247 1.06972 1.19083 1.04519 1.26758 1.05336 1.04201 0.98651 1.44067 1.24359 1.35534 1.29400 1.18644 0.87697 0.89554 0.88457 1.21726 0.99047 1.00413 1.05544 1.21424 0.93655 0.96773 0.91605 1.21009 1.01579 1.00852 1.01180 1.24674 0.97015 0.91862 1.03469 1.86473 1.57366 1.29061 1.63143 0.85393 0.79924 0.77369 0.77693 1.18365 1.19804 1.17777 1.22408 0.89300 0.93494 0.97318 1.67111 1.17282 1.33552 1.10740 1.27718 0.98623 1.03127 1.13014 1.21427 0.96268 0.98898 0.95343 1.21548 1.00622 0.97153 0.97455 1.21485 0.95340 0.97532 1.00126 1.21552 0.96894 1.00897 0.97408 1.21419 0.99831 0.95280 0.95314 0.92202 0.91325 0.90355 0.90191 0.91336 0.91126 0.88059 0.88720 0.75391 0.82767 0.83173 0.85799 0.76433 0.83067 0.84528 0.85361 0.85476 0.85336 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.56 8.07 113.37 0.92 2.47 16 2 Si 1.12 -7.51 11.22 68.60 0.77 -6.74 16 3 C -0.46 2.17 8.52 113.37 0.97 3.13 16 4 C -0.18 1.14 5.15 127.77 0.66 1.79 16 5 N -0.70 1.37 4.85 -181.26 -0.88 0.49 16 6 C 0.39 1.08 7.54 133.05 1.00 2.08 16 7 C -0.24 -0.02 8.69 22.50 0.20 0.18 16 8 C -0.01 0.00 9.83 22.44 0.22 0.22 16 9 C -0.24 -0.33 5.36 -19.76 -0.11 -0.44 16 10 C -0.06 0.06 2.82 71.24 0.20 0.26 16 11 O -0.55 -0.10 12.84 -148.98 -1.91 -2.01 16 12 Si 0.97 -0.51 25.16 68.60 1.73 1.22 16 13 H -0.26 -0.28 7.11 99.48 0.71 0.43 16 14 H -0.27 -0.73 7.11 99.48 0.71 -0.03 16 15 H -0.25 0.05 7.05 99.48 0.70 0.75 16 16 C 0.13 0.54 9.84 84.64 0.83 1.37 16 17 N -0.57 -3.63 10.39 -193.27 -2.01 -5.64 16 18 C -0.38 0.86 4.59 22.27 0.10 0.96 16 19 C -0.10 0.09 9.29 22.27 0.21 0.29 16 20 C -0.15 -0.15 10.05 22.27 0.22 0.07 16 21 C -0.13 -0.21 10.05 22.27 0.22 0.02 16 22 C -0.15 -0.15 10.05 22.27 0.22 0.07 16 23 C -0.10 0.09 9.29 22.27 0.21 0.30 16 24 H 0.06 -0.03 7.96 -2.39 -0.02 -0.04 16 25 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 26 H 0.08 -0.39 7.69 -2.38 -0.02 -0.41 16 27 H 0.08 -0.51 7.68 -2.39 -0.02 -0.53 16 28 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 29 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 30 H 0.10 -0.89 7.96 -2.39 -0.02 -0.91 16 31 H 0.09 -0.67 5.71 -2.39 -0.01 -0.69 16 32 H 0.41 -1.23 8.95 -92.70 -0.83 -2.06 16 33 H 0.15 -0.72 5.97 -2.91 -0.02 -0.74 16 34 H 0.15 -0.46 8.06 -2.91 -0.02 -0.48 16 35 H 0.12 -0.37 7.96 -2.39 -0.02 -0.39 16 36 H 0.39 -2.15 8.70 -74.05 -0.64 -2.79 16 37 H 0.15 0.24 4.87 -2.91 -0.01 0.22 16 38 H 0.14 -0.71 7.42 -2.91 -0.02 -0.73 16 39 H 0.13 -0.25 8.06 -2.91 -0.02 -0.28 16 40 H 0.13 -0.15 8.06 -2.91 -0.02 -0.18 16 41 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 42 H 0.14 -0.71 7.43 -2.91 -0.02 -0.73 16 Total: 0.00 -14.56 349.30 4.08 -10.48 By element: Atomic # 1 Polarization: -10.89 SS G_CDS: 0.31 Total: -10.58 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 6.07 Total: 12.78 kcal Atomic # 7 Polarization: -2.26 SS G_CDS: -2.89 Total: -5.15 kcal Atomic # 8 Polarization: -0.10 SS G_CDS: -1.91 Total: -2.01 kcal Atomic # 14 Polarization: -8.02 SS G_CDS: 2.50 Total: -5.52 kcal Total: -14.56 4.08 -10.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_8986900_13915762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.336 kcal (2) G-P(sol) polarization free energy of solvation -14.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds