Wall clock time and date at job start Mon Mar 8 2021 06:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86296 * 109.47342 * 2 1 4 4 C 1.86303 * 109.47038 * 119.99716 * 2 1 3 5 5 N 1.46498 * 109.47353 * 299.99846 * 4 2 1 6 6 C 1.38620 * 119.99673 * 94.72131 * 5 4 2 7 7 N 1.29685 * 124.94853 * 0.30417 * 6 5 4 8 8 C 1.32124 * 116.86386 * 179.97438 * 7 6 5 9 9 C 1.33332 * 114.57899 * 0.02562 * 8 7 6 10 10 C 1.50699 * 125.95188 * 180.02562 * 9 8 7 11 11 O 1.42903 * 109.46552 * 299.99408 * 10 9 8 12 12 Si 1.86302 * 109.47189 * 179.97438 * 10 9 8 13 13 H 1.48502 * 109.46888 * 59.99949 * 12 10 9 14 14 H 1.48496 * 109.47095 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46929 * 299.99829 * 12 10 9 16 16 S 1.70968 * 124.94669 * 179.97438 * 6 5 4 17 17 C 1.86796 * 109.47152 * 239.99690 * 2 1 3 18 18 C 1.38238 * 119.99821 * 149.73065 * 17 2 1 19 19 C 1.38240 * 119.99675 * 179.76936 * 18 17 2 20 20 C 1.38235 * 120.00161 * 0.49976 * 19 18 17 21 21 C 1.38240 * 119.99807 * 359.75477 * 20 19 18 22 22 C 1.38233 * 119.99996 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47260 * 300.00156 * 1 2 3 24 24 H 1.09003 * 109.46705 * 59.99917 * 1 2 3 25 25 H 1.08995 * 109.47373 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47359 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47288 * 299.99725 * 3 2 1 28 28 H 1.08994 * 109.47527 * 59.99336 * 3 2 1 29 29 H 1.09005 * 109.47273 * 179.97438 * 4 2 1 30 30 H 1.09004 * 109.46841 * 59.99771 * 4 2 1 31 31 H 0.97001 * 120.00384 * 275.00526 * 5 4 2 32 32 H 1.07996 * 122.70839 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.47212 * 59.99331 * 10 9 8 34 34 H 0.96703 * 113.99543 * 180.02562 * 11 10 9 35 35 H 1.07997 * 120.00514 * 359.97438 * 18 17 2 36 36 H 1.08003 * 119.99660 * 180.22620 * 19 18 17 37 37 H 1.08004 * 120.00154 * 179.72367 * 20 19 18 38 38 H 1.08000 * 119.99881 * 179.97438 * 21 20 19 39 39 H 1.07996 * 119.99708 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 1.5212 5 7 1.9957 -0.1875 2.7174 6 6 0.8343 -0.6174 3.3403 7 7 0.1100 -1.6202 2.9510 8 6 -0.9678 -1.8912 3.6656 9 6 -1.1623 -1.0796 4.7054 10 6 -2.3040 -1.1561 5.6860 11 8 -3.5416 -0.9969 4.9895 12 14 -2.1256 0.1973 6.9537 13 1 -2.1444 1.5176 6.2742 14 1 -3.2510 0.1223 7.9197 15 1 -0.8395 0.0313 7.6774 16 16 0.1527 0.0922 4.7384 17 6 2.4856 -0.8806 -1.5251 18 6 3.6909 -0.5115 -2.0927 19 6 4.1539 -1.1665 -3.2186 20 6 3.4069 -2.1835 -3.7829 21 6 2.1991 -2.5491 -3.2184 22 6 1.7387 -1.8979 -2.0893 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.5740 1.7564 -0.0005 27 1 2.1208 2.2703 -0.8900 28 1 2.1207 2.2703 0.8898 29 1 3.5740 -0.8786 1.5210 30 1 2.1205 -1.9058 1.5212 31 1 2.4827 0.5731 3.0711 32 1 -1.6371 -2.7044 3.4267 33 1 -2.2900 -2.1251 6.1850 34 1 -4.3216 -1.0350 5.5598 35 1 4.2723 0.2862 -1.6547 36 1 5.0973 -0.8805 -3.6599 37 1 3.7665 -2.6922 -4.6652 38 1 1.6153 -3.3434 -3.6595 39 1 0.7950 -2.1832 -1.6485 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_8986900_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:53:19 Heat of formation + Delta-G solvation = 3.142084 kcal Electronic energy + Delta-G solvation = -20228.367542 eV Core-core repulsion = 17193.136125 eV Total energy + Delta-G solvation = -3035.231417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 308.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55400 -39.63802 -37.92470 -36.51325 -31.74923 -31.56816 -31.48090 -29.15739 -28.40658 -27.93348 -26.02777 -23.94083 -23.20069 -22.91905 -20.45485 -19.82740 -18.50735 -17.96799 -17.44507 -16.46261 -16.07015 -15.89136 -15.82497 -15.57652 -15.41740 -14.71430 -14.38561 -14.34457 -14.28226 -14.22620 -13.91887 -13.61216 -13.50255 -13.22349 -13.01543 -12.90986 -12.78904 -12.39250 -12.32918 -12.19615 -12.02115 -11.90542 -10.92413 -10.87332 -10.65521 -10.44449 -10.17373 -10.02693 -9.71103 -9.68778 -8.44043 0.03025 0.12405 0.41046 0.61239 0.74786 1.15706 1.41450 1.46913 1.67029 1.73916 1.83389 1.91148 2.18057 2.33473 2.50890 3.04113 3.48448 3.82216 4.06262 4.11602 4.21401 4.28491 4.28930 4.46549 4.60966 4.65045 4.67120 4.75252 4.84733 4.87672 4.89216 4.97327 5.10259 5.18246 5.22201 5.41325 5.60671 5.64206 5.70253 5.71776 5.88328 6.11079 6.22058 6.58003 7.12282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.437 4.437 2 Si 1.058 2.942 3 C -0.448 4.448 4 C -0.164 4.164 5 N -0.675 5.675 6 C 0.327 3.673 7 N -0.546 5.546 8 C 0.124 3.876 9 C -0.265 4.265 10 C -0.022 4.022 11 O -0.544 6.544 12 Si 0.894 3.106 13 H -0.234 1.234 14 H -0.234 1.234 15 H -0.236 1.236 16 S 0.070 5.930 17 C -0.373 4.373 18 C -0.090 4.090 19 C -0.134 4.134 20 C -0.109 4.109 21 C -0.133 4.133 22 C -0.085 4.085 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.416 0.584 32 H 0.176 0.824 33 H 0.083 0.917 34 H 0.381 0.619 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 0.787 1.656 2.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.545 4.545 2 Si 1.247 2.753 3 C -0.556 4.556 4 C -0.337 4.337 5 N -0.314 5.314 6 C -0.044 4.044 7 N -0.271 5.271 8 C -0.027 4.027 9 C -0.388 4.388 10 C -0.136 4.136 11 O -0.350 6.350 12 Si 0.714 3.286 13 H -0.157 1.157 14 H -0.157 1.157 15 H -0.159 1.159 16 S 0.319 5.681 17 C -0.416 4.416 18 C -0.108 4.108 19 C -0.152 4.152 20 C -0.127 4.127 21 C -0.151 4.151 22 C -0.103 4.103 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.253 0.747 32 H 0.193 0.807 33 H 0.100 0.900 34 H 0.228 0.772 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.906 1.893 1.763 3.213 hybrid contribution -0.650 -0.926 -0.177 1.145 sum 1.256 0.967 1.586 2.242 Atomic orbital electron populations 1.26016 1.19612 1.04947 1.03956 0.78481 0.67783 0.66290 0.62753 1.26113 1.06162 1.18449 1.04844 1.26494 1.03394 1.05215 0.98569 1.43501 1.23061 1.35128 1.29720 1.23573 0.92979 0.94131 0.93696 1.66447 1.08742 1.18303 1.33656 1.21291 0.92760 0.98953 0.89686 1.24289 1.03346 1.03582 1.07558 1.23635 0.83571 1.07661 0.98750 1.86529 1.14410 1.96210 1.37847 0.86335 0.83483 0.79934 0.78808 1.15687 1.15680 1.15879 1.84020 1.21551 1.35403 1.27173 1.27226 0.98820 1.03339 1.12217 1.21092 0.95772 0.98487 0.95401 1.21266 0.99989 0.96976 0.96955 1.21241 0.94922 0.97062 0.99501 1.21288 0.96631 1.00285 0.96870 1.21124 0.99099 0.94968 0.95118 0.91475 0.91463 0.90671 0.91069 0.90769 0.91012 0.89871 0.88180 0.74682 0.80680 0.89962 0.77189 0.86293 0.86335 0.86272 0.86281 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -0.23 8.53 101.05 0.86 0.63 16 2 Si 1.06 -1.76 11.38 -169.99 -1.93 -3.70 16 3 C -0.45 0.83 8.52 101.05 0.86 1.69 16 4 C -0.16 0.20 5.41 59.85 0.32 0.53 16 5 N -0.68 0.53 4.83 -10.29 -0.05 0.48 16 6 C 0.33 0.55 7.97 -87.67 -0.70 -0.15 16 7 N -0.55 -1.66 9.74 -15.20 -0.15 -1.81 16 8 C 0.12 0.32 11.22 -19.14 -0.21 0.10 16 9 C -0.27 -0.54 5.78 -36.02 -0.21 -0.75 16 10 C -0.02 0.00 2.98 36.00 0.11 0.11 16 11 O -0.54 -0.14 12.85 -35.23 -0.45 -0.60 16 12 Si 0.89 -0.05 26.34 -169.99 -4.48 -4.53 16 13 H -0.23 -0.36 7.11 56.52 0.40 0.04 16 14 H -0.23 0.13 7.11 56.52 0.40 0.53 16 15 H -0.24 -0.14 7.11 56.52 0.40 0.26 16 16 S 0.07 0.10 20.57 -107.50 -2.21 -2.11 16 17 C -0.37 -0.16 4.59 -39.58 -0.18 -0.34 16 18 C -0.09 -0.05 9.29 -39.58 -0.37 -0.42 16 19 C -0.13 -0.16 10.05 -39.58 -0.40 -0.55 16 20 C -0.11 -0.16 10.05 -39.58 -0.40 -0.55 16 21 C -0.13 -0.21 10.05 -39.58 -0.40 -0.60 16 22 C -0.09 -0.11 9.29 -39.58 -0.37 -0.48 16 23 H 0.07 0.11 7.96 -51.93 -0.41 -0.30 16 24 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 25 H 0.07 0.10 7.69 -51.93 -0.40 -0.30 16 26 H 0.07 -0.19 7.68 -51.93 -0.40 -0.59 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 29 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 30 H 0.10 0.04 7.30 -51.93 -0.38 -0.34 16 31 H 0.42 -1.32 8.95 -40.82 -0.37 -1.68 16 32 H 0.18 0.19 8.06 -52.49 -0.42 -0.24 16 33 H 0.08 -0.16 7.96 -51.93 -0.41 -0.58 16 34 H 0.38 -1.62 8.74 45.56 0.40 -1.23 16 35 H 0.12 -0.19 7.42 -52.49 -0.39 -0.57 16 36 H 0.12 -0.06 8.06 -52.48 -0.42 -0.48 16 37 H 0.12 -0.02 8.06 -52.48 -0.42 -0.45 16 38 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 39 H 0.12 0.00 7.43 -52.49 -0.39 -0.39 16 LS Contribution 345.97 15.07 5.21 5.21 Total: 0.00 -6.63 345.97 -10.03 -16.65 By element: Atomic # 1 Polarization: -3.93 SS G_CDS: -4.89 Total: -8.82 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -1.08 Total: -0.79 kcal Atomic # 7 Polarization: -1.12 SS G_CDS: -0.20 Total: -1.32 kcal Atomic # 8 Polarization: -0.14 SS G_CDS: -0.45 Total: -0.60 kcal Atomic # 14 Polarization: -1.82 SS G_CDS: -6.41 Total: -8.23 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.21 Total: -2.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -6.63 -10.03 -16.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_8986900_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.796 kcal (2) G-P(sol) polarization free energy of solvation -6.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds