Wall clock time and date at job start Mon Mar 8 2021 06:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86296 * 109.47342 * 2 1 4 4 C 1.86303 * 109.47038 * 119.99716 * 2 1 3 5 5 N 1.46498 * 109.47353 * 299.99846 * 4 2 1 6 6 C 1.38620 * 119.99673 * 94.72131 * 5 4 2 7 7 N 1.29685 * 124.94853 * 0.30417 * 6 5 4 8 8 C 1.32124 * 116.86386 * 179.97438 * 7 6 5 9 9 C 1.33332 * 114.57899 * 0.02562 * 8 7 6 10 10 C 1.50699 * 125.95188 * 180.02562 * 9 8 7 11 11 O 1.42903 * 109.46552 * 299.99408 * 10 9 8 12 12 Si 1.86302 * 109.47189 * 179.97438 * 10 9 8 13 13 H 1.48502 * 109.46888 * 59.99949 * 12 10 9 14 14 H 1.48496 * 109.47095 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46929 * 299.99829 * 12 10 9 16 16 S 1.70968 * 124.94669 * 179.97438 * 6 5 4 17 17 C 1.86796 * 109.47152 * 239.99690 * 2 1 3 18 18 C 1.38238 * 119.99821 * 149.73065 * 17 2 1 19 19 C 1.38240 * 119.99675 * 179.76936 * 18 17 2 20 20 C 1.38235 * 120.00161 * 0.49976 * 19 18 17 21 21 C 1.38240 * 119.99807 * 359.75477 * 20 19 18 22 22 C 1.38233 * 119.99996 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47260 * 300.00156 * 1 2 3 24 24 H 1.09003 * 109.46705 * 59.99917 * 1 2 3 25 25 H 1.08995 * 109.47373 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47359 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47288 * 299.99725 * 3 2 1 28 28 H 1.08994 * 109.47527 * 59.99336 * 3 2 1 29 29 H 1.09005 * 109.47273 * 179.97438 * 4 2 1 30 30 H 1.09004 * 109.46841 * 59.99771 * 4 2 1 31 31 H 0.97001 * 120.00384 * 275.00526 * 5 4 2 32 32 H 1.07996 * 122.70839 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.47212 * 59.99331 * 10 9 8 34 34 H 0.96703 * 113.99543 * 180.02562 * 11 10 9 35 35 H 1.07997 * 120.00514 * 359.97438 * 18 17 2 36 36 H 1.08003 * 119.99660 * 180.22620 * 19 18 17 37 37 H 1.08004 * 120.00154 * 179.72367 * 20 19 18 38 38 H 1.08000 * 119.99881 * 179.97438 * 21 20 19 39 39 H 1.07996 * 119.99708 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 1.5212 5 7 1.9957 -0.1875 2.7174 6 6 0.8343 -0.6174 3.3403 7 7 0.1100 -1.6202 2.9510 8 6 -0.9678 -1.8912 3.6656 9 6 -1.1623 -1.0796 4.7054 10 6 -2.3040 -1.1561 5.6860 11 8 -3.5416 -0.9969 4.9895 12 14 -2.1256 0.1973 6.9537 13 1 -2.1444 1.5176 6.2742 14 1 -3.2510 0.1223 7.9197 15 1 -0.8395 0.0313 7.6774 16 16 0.1527 0.0922 4.7384 17 6 2.4856 -0.8806 -1.5251 18 6 3.6909 -0.5115 -2.0927 19 6 4.1539 -1.1665 -3.2186 20 6 3.4069 -2.1835 -3.7829 21 6 2.1991 -2.5491 -3.2184 22 6 1.7387 -1.8979 -2.0893 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.5740 1.7564 -0.0005 27 1 2.1208 2.2703 -0.8900 28 1 2.1207 2.2703 0.8898 29 1 3.5740 -0.8786 1.5210 30 1 2.1205 -1.9058 1.5212 31 1 2.4827 0.5731 3.0711 32 1 -1.6371 -2.7044 3.4267 33 1 -2.2900 -2.1251 6.1850 34 1 -4.3216 -1.0350 5.5598 35 1 4.2723 0.2862 -1.6547 36 1 5.0973 -0.8805 -3.6599 37 1 3.7665 -2.6922 -4.6652 38 1 1.6153 -3.3434 -3.6595 39 1 0.7950 -2.1832 -1.6485 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_8986900_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:53:18 Heat of formation + Delta-G solvation = 9.888561 kcal Electronic energy + Delta-G solvation = -20228.074993 eV Core-core repulsion = 17193.136125 eV Total energy + Delta-G solvation = -3034.938868 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 308.088 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.63812 -39.65222 -37.90022 -36.51007 -31.76995 -31.59218 -31.52180 -29.08796 -28.37221 -27.91499 -26.05501 -23.98490 -23.22952 -22.94634 -20.51775 -19.87248 -18.47351 -17.97753 -17.48728 -16.45535 -16.09626 -15.90372 -15.84088 -15.61481 -15.46849 -14.70627 -14.39837 -14.34665 -14.26518 -14.21809 -13.85617 -13.55726 -13.51882 -13.18620 -12.96066 -12.90913 -12.82212 -12.41261 -12.36205 -12.20121 -12.05123 -11.90710 -10.88772 -10.83547 -10.67341 -10.49940 -10.22164 -10.09723 -9.76149 -9.72398 -8.45965 -0.04807 0.04987 0.38013 0.56054 0.66788 1.15477 1.42334 1.45756 1.72625 1.80357 1.90664 1.95332 2.07855 2.38243 2.55833 3.00078 3.59263 3.78830 4.06097 4.11619 4.20939 4.29645 4.40378 4.55158 4.62078 4.71917 4.77050 4.78757 4.80594 4.84084 4.86617 5.03419 5.08332 5.11968 5.20745 5.54180 5.57979 5.60911 5.66579 5.68126 5.84432 6.20469 6.22341 6.84835 7.07145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.121 2.879 3 C -0.451 4.451 4 C -0.172 4.172 5 N -0.666 5.666 6 C 0.322 3.678 7 N -0.568 5.568 8 C 0.109 3.891 9 C -0.277 4.277 10 C -0.022 4.022 11 O -0.562 6.562 12 Si 0.917 3.083 13 H -0.261 1.261 14 H -0.222 1.222 15 H -0.246 1.246 16 S 0.067 5.933 17 C -0.383 4.383 18 C -0.098 4.098 19 C -0.148 4.148 20 C -0.126 4.126 21 C -0.151 4.151 22 C -0.104 4.104 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.428 0.572 32 H 0.182 0.818 33 H 0.104 0.896 34 H 0.399 0.601 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 1.335 2.178 3.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.306 2.694 3 C -0.560 4.560 4 C -0.344 4.344 5 N -0.306 5.306 6 C -0.049 4.049 7 N -0.294 5.294 8 C -0.041 4.041 9 C -0.399 4.399 10 C -0.135 4.135 11 O -0.371 6.371 12 Si 0.739 3.261 13 H -0.185 1.185 14 H -0.144 1.144 15 H -0.169 1.169 16 S 0.316 5.684 17 C -0.425 4.425 18 C -0.116 4.116 19 C -0.166 4.166 20 C -0.144 4.144 21 C -0.169 4.169 22 C -0.122 4.122 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.102 0.898 31 H 0.268 0.732 32 H 0.199 0.801 33 H 0.122 0.878 34 H 0.250 0.750 35 H 0.161 0.839 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.681 2.427 2.287 4.279 hybrid contribution -0.922 -1.097 -0.379 1.482 sum 1.760 1.330 1.909 2.917 Atomic orbital electron populations 1.26291 1.22652 1.03876 1.03144 0.77545 0.64779 0.66029 0.61071 1.26120 1.07294 1.17591 1.04969 1.26625 1.04848 1.04364 0.98533 1.43595 1.22232 1.35257 1.29485 1.23766 0.93453 0.93882 0.93840 1.66446 1.09373 1.19223 1.34383 1.21480 0.93043 0.99536 0.90081 1.24604 1.04066 1.03393 1.07877 1.23699 0.83008 1.08780 0.98031 1.86481 1.15259 1.96291 1.39077 0.86026 0.83279 0.78342 0.78438 1.18523 1.14422 1.16936 1.83948 1.21687 1.35523 1.27253 1.27683 0.98803 1.03043 1.12928 1.21455 0.95953 0.98949 0.95265 1.21580 1.00650 0.96965 0.97358 1.21487 0.95103 0.97616 1.00147 1.21521 0.97140 1.00872 0.97336 1.21351 0.99690 0.95648 0.95478 0.92724 0.91713 0.91905 0.89474 0.91116 0.90487 0.87560 0.89788 0.73227 0.80069 0.87808 0.75018 0.83889 0.84894 0.85244 0.85588 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -1.07 8.53 113.37 0.97 -0.10 16 2 Si 1.12 -4.05 11.38 68.60 0.78 -3.27 16 3 C -0.45 2.37 8.52 113.37 0.97 3.34 16 4 C -0.17 0.51 5.41 127.77 0.69 1.20 16 5 N -0.67 1.25 4.83 -186.45 -0.90 0.35 16 6 C 0.32 1.27 7.97 179.32 1.43 2.70 16 7 N -0.57 -4.08 9.74 -202.01 -1.97 -6.05 16 8 C 0.11 0.68 11.22 83.54 0.94 1.61 16 9 C -0.28 -1.32 5.78 24.58 0.14 -1.17 16 10 C -0.02 0.00 2.98 71.24 0.21 0.21 16 11 O -0.56 -0.28 12.85 -148.98 -1.91 -2.20 16 12 Si 0.92 -0.04 26.34 68.60 1.81 1.76 16 13 H -0.26 -1.10 7.11 99.48 0.71 -0.39 16 14 H -0.22 0.47 7.11 99.48 0.71 1.17 16 15 H -0.25 -0.35 7.11 99.48 0.71 0.36 16 16 S 0.07 0.24 20.57 -56.49 -1.16 -0.92 16 17 C -0.38 -0.32 4.59 22.27 0.10 -0.22 16 18 C -0.10 -0.04 9.29 22.27 0.21 0.16 16 19 C -0.15 -0.31 10.05 22.27 0.22 -0.09 16 20 C -0.13 -0.43 10.05 22.27 0.22 -0.21 16 21 C -0.15 -0.63 10.05 22.27 0.22 -0.41 16 22 C -0.10 -0.37 9.29 22.27 0.21 -0.16 16 23 H 0.05 0.26 7.96 -2.39 -0.02 0.24 16 24 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 25 H 0.06 0.29 7.69 -2.39 -0.02 0.27 16 26 H 0.09 -0.69 7.68 -2.39 -0.02 -0.71 16 27 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 28 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 29 H 0.11 -0.78 7.96 -2.38 -0.02 -0.80 16 30 H 0.08 0.10 7.30 -2.39 -0.02 0.09 16 31 H 0.43 -3.11 8.95 -92.71 -0.83 -3.94 16 32 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 33 H 0.10 -0.48 7.96 -2.39 -0.02 -0.50 16 34 H 0.40 -3.59 8.74 -74.06 -0.65 -4.24 16 35 H 0.14 -0.73 7.42 -2.91 -0.02 -0.76 16 36 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 37 H 0.13 0.02 8.06 -2.91 -0.02 -0.01 16 38 H 0.13 0.18 8.06 -2.91 -0.02 0.15 16 39 H 0.12 0.21 7.43 -2.91 -0.02 0.18 16 Total: 0.00 -16.10 345.97 3.51 -12.58 By element: Atomic # 1 Polarization: -9.48 SS G_CDS: 0.34 Total: -9.14 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 6.53 Total: 6.87 kcal Atomic # 7 Polarization: -2.83 SS G_CDS: -2.87 Total: -5.70 kcal Atomic # 8 Polarization: -0.28 SS G_CDS: -1.91 Total: -2.20 kcal Atomic # 14 Polarization: -4.09 SS G_CDS: 2.59 Total: -1.50 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.16 Total: -0.92 kcal Total: -16.10 3.51 -12.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_8986900_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.471 kcal (2) G-P(sol) polarization free energy of solvation -16.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds