Wall clock time and date at job start Mon Mar 8 2021 06:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33331 * 125.95275 * 2 1 4 4 C 1.50700 * 122.70938 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.47291 * 329.99664 * 4 3 2 6 6 Si 1.86303 * 109.47087 * 209.99762 * 4 3 2 7 7 H 1.48502 * 109.46933 * 179.97438 * 6 4 3 8 8 H 1.48503 * 109.47153 * 300.00047 * 6 4 3 9 9 H 1.48500 * 109.46986 * 59.99870 * 6 4 3 10 10 N 1.32115 * 114.58076 * 179.97438 * 3 2 1 11 11 C 1.29694 * 116.86485 * 0.02562 * 10 3 2 12 12 N 1.38609 * 124.94873 * 180.02562 * 11 10 3 13 13 C 1.46493 * 120.00234 * 179.97438 * 12 11 10 14 14 Si 1.86301 * 109.47114 * 95.00097 * 13 12 11 15 15 C 1.86302 * 109.46967 * 300.00144 * 14 13 12 16 16 C 1.86301 * 109.47265 * 60.00107 * 14 13 12 17 17 C 1.86806 * 109.47187 * 180.02562 * 14 13 12 18 18 C 1.38228 * 119.99721 * 269.72561 * 17 14 13 19 19 C 1.38240 * 119.99669 * 179.76762 * 18 17 14 20 20 C 1.38233 * 119.99915 * 0.50392 * 19 18 17 21 21 C 1.38233 * 120.00030 * 359.75043 * 20 19 18 22 22 C 1.38232 * 119.99987 * 0.02562 * 21 20 19 23 23 S 1.70958 * 110.10068 * 359.97438 * 11 10 3 24 24 H 1.08991 * 109.47007 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46856 * 300.03082 * 1 2 3 26 26 H 1.09003 * 109.46759 * 60.02612 * 1 2 3 27 27 H 1.09001 * 109.47000 * 89.99918 * 4 3 2 28 28 H 0.96693 * 114.00270 * 179.97438 * 5 4 3 29 29 H 0.97008 * 120.00299 * 359.97438 * 12 11 10 30 30 H 1.08996 * 109.47587 * 215.00059 * 13 12 11 31 31 H 1.09001 * 109.46925 * 335.00668 * 13 12 11 32 32 H 1.08997 * 109.47067 * 60.00540 * 15 14 13 33 33 H 1.09003 * 109.46775 * 180.02562 * 15 14 13 34 34 H 1.08992 * 109.47397 * 299.99801 * 15 14 13 35 35 H 1.09001 * 109.46610 * 60.00025 * 16 14 13 36 36 H 1.08993 * 109.47298 * 179.97438 * 16 14 13 37 37 H 1.08996 * 109.46851 * 300.00202 * 16 14 13 38 38 H 1.07996 * 120.00473 * 0.02562 * 18 17 14 39 39 H 1.08003 * 120.00018 * 180.23172 * 19 18 17 40 40 H 1.08000 * 119.99926 * 179.72673 * 20 19 18 41 41 H 1.08003 * 120.00197 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.00188 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 -0.0006 5 8 0.4817 2.5020 -0.6747 6 14 2.9328 3.6147 -0.8786 7 1 2.3921 4.9978 -0.8797 8 1 4.2420 3.5950 -0.1780 9 1 3.1134 3.1533 -2.2785 10 7 3.5851 0.8188 0.0005 11 6 3.9315 -0.4310 0.0005 12 7 5.2384 -0.8927 0.0015 13 6 5.5066 -2.3329 0.0019 14 14 5.7720 -2.9156 -1.7476 15 6 4.2446 -2.5685 -2.7563 16 6 7.2239 -2.0138 -2.4890 17 6 6.1132 -4.7522 -1.7473 18 6 7.4123 -5.2138 -1.6475 19 6 7.6643 -6.5730 -1.6423 20 6 6.6181 -7.4704 -1.7475 21 6 5.3194 -7.0086 -1.8526 22 6 5.0670 -5.6495 -1.8531 23 16 2.5413 -1.4260 0.0004 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5143 0.8898 26 1 -0.3633 0.5135 -0.8903 27 1 1.6089 2.8217 1.0270 28 1 0.0692 3.3757 -0.7129 29 1 5.9756 -0.2621 0.0019 30 1 6.4002 -2.5360 0.5920 31 1 4.6570 -2.8605 0.4355 32 1 4.0452 -1.4969 -2.7566 33 1 4.3998 -2.9098 -3.7798 34 1 3.3952 -3.0960 -2.3226 35 1 8.1175 -2.2170 -1.8988 36 1 7.3795 -2.3551 -3.5124 37 1 7.0244 -0.9423 -2.4892 38 1 8.2300 -4.5127 -1.5693 39 1 8.6790 -6.9338 -1.5606 40 1 6.8154 -8.5322 -1.7479 41 1 4.5020 -7.7097 -1.9352 42 1 4.0524 -5.2888 -1.9356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_8986900_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:53:28 Heat of formation + Delta-G solvation = -1.773735 kcal Electronic energy + Delta-G solvation = -22327.881475 eV Core-core repulsion = 19136.899273 eV Total energy + Delta-G solvation = -3190.982202 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 322.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.81790 -39.71940 -37.92942 -36.62621 -32.73201 -31.82433 -31.63396 -29.56675 -29.17973 -28.54547 -26.95468 -25.32358 -23.92414 -23.27972 -22.99109 -20.46530 -19.21606 -18.16310 -17.95754 -17.21373 -16.46743 -16.27029 -15.99339 -15.72396 -15.65655 -15.33427 -14.73503 -14.45917 -14.38081 -14.35560 -14.06766 -13.97110 -13.76373 -13.64218 -13.57496 -13.31474 -13.25465 -13.15844 -12.99348 -12.92510 -12.25363 -12.06777 -11.98490 -11.91831 -11.51590 -11.03488 -10.97969 -10.64601 -10.38480 -10.22280 -9.86904 -9.78611 -9.68576 -8.33181 0.14906 0.30367 0.32606 0.53677 0.91429 1.30241 1.50861 1.55363 1.65622 1.66550 1.76759 2.03386 2.14488 2.28817 2.35519 2.96043 3.21021 3.93281 4.04291 4.07465 4.14216 4.21878 4.32095 4.48434 4.51178 4.54710 4.56872 4.62270 4.63324 4.69138 4.72344 4.75480 4.99061 5.02595 5.03329 5.14501 5.23920 5.38505 5.48335 5.48880 5.55894 5.59360 5.63891 5.64454 6.14277 6.34504 6.62341 7.06003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.229 4.229 3 C 0.101 3.899 4 C -0.046 4.046 5 O -0.543 6.543 6 Si 0.978 3.022 7 H -0.266 1.266 8 H -0.246 1.246 9 H -0.256 1.256 10 N -0.551 5.551 11 C 0.317 3.683 12 N -0.678 5.678 13 C -0.172 4.172 14 Si 1.049 2.951 15 C -0.446 4.446 16 C -0.445 4.445 17 C -0.374 4.374 18 C -0.088 4.088 19 C -0.133 4.133 20 C -0.108 4.108 21 C -0.132 4.132 22 C -0.087 4.087 23 S 0.098 5.902 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.382 0.618 29 H 0.415 0.585 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 -1.085 0.430 1.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.352 4.352 3 C -0.029 4.029 4 C -0.158 4.158 5 O -0.349 6.349 6 Si 0.799 3.201 7 H -0.191 1.191 8 H -0.169 1.169 9 H -0.180 1.180 10 N -0.279 5.279 11 C -0.054 4.054 12 N -0.318 5.318 13 C -0.342 4.342 14 Si 1.239 2.761 15 C -0.555 4.555 16 C -0.554 4.554 17 C -0.417 4.417 18 C -0.106 4.106 19 C -0.151 4.151 20 C -0.126 4.126 21 C -0.150 4.150 22 C -0.105 4.105 23 S 0.347 5.653 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.230 0.770 29 H 0.253 0.747 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.248 -2.130 0.000 2.468 hybrid contribution -0.220 0.995 0.443 1.112 sum 1.028 -1.134 0.443 1.593 Atomic orbital electron populations 1.20087 0.86464 1.01272 1.03789 1.25105 1.01338 0.92538 1.16202 1.18741 0.86477 0.95057 1.02597 1.23977 0.92781 0.97707 1.01370 1.86448 1.33943 1.35478 1.79052 0.85216 0.78873 0.75513 0.80488 1.19070 1.16875 1.17965 1.65799 1.17085 1.16922 1.28067 1.23186 0.91771 0.91297 0.99135 1.43349 1.01743 1.06514 1.80225 1.26659 1.05757 0.82456 1.19350 0.78597 0.68460 0.62579 0.66449 1.26145 1.14558 1.05421 1.09344 1.26058 1.13513 1.08323 1.07460 1.27160 0.95248 1.15558 1.03771 1.21096 0.96675 0.95414 0.97415 1.21281 0.99094 0.93815 1.00891 1.21256 0.93082 0.99716 0.98522 1.21287 0.96888 0.96040 1.00790 1.21113 0.98996 0.93185 0.97178 1.83877 0.96564 1.10750 1.74145 0.92627 0.91082 0.89261 0.90103 0.76991 0.74705 0.88590 0.89601 0.90955 0.90638 0.90667 0.90967 0.90639 0.90738 0.86216 0.86253 0.86198 0.86202 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.07 8.91 36.01 0.32 0.25 16 2 C -0.23 -0.69 6.50 -36.02 -0.23 -0.93 16 3 C 0.10 0.37 5.95 -84.18 -0.50 -0.13 16 4 C -0.05 -0.06 2.93 36.01 0.11 0.05 16 5 O -0.54 0.00 9.80 -35.23 -0.35 -0.35 16 6 Si 0.98 1.72 27.37 -169.99 -4.65 -2.93 16 7 H -0.27 -0.27 7.11 56.52 0.40 0.13 16 8 H -0.25 -0.83 7.11 56.52 0.40 -0.42 16 9 H -0.26 -0.99 7.11 56.52 0.40 -0.59 16 10 N -0.55 -2.31 8.95 -11.36 -0.10 -2.41 16 11 C 0.32 0.77 8.13 -87.68 -0.71 0.05 16 12 N -0.68 0.20 4.83 -10.29 -0.05 0.15 16 13 C -0.17 0.37 5.30 59.84 0.32 0.69 16 14 Si 1.05 -2.66 11.38 -169.99 -1.93 -4.59 16 15 C -0.45 0.40 8.18 101.05 0.83 1.23 16 16 C -0.44 0.92 8.53 101.05 0.86 1.78 16 17 C -0.37 0.23 4.59 -39.59 -0.18 0.05 16 18 C -0.09 0.02 9.29 -39.58 -0.37 -0.35 16 19 C -0.13 -0.06 10.05 -39.58 -0.40 -0.46 16 20 C -0.11 -0.07 10.05 -39.59 -0.40 -0.46 16 21 C -0.13 -0.07 10.05 -39.59 -0.40 -0.47 16 22 C -0.09 0.00 9.29 -39.59 -0.37 -0.37 16 23 S 0.10 0.16 21.17 -107.50 -2.28 -2.11 16 24 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 25 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 26 H 0.09 0.13 6.74 -51.93 -0.35 -0.22 16 27 H 0.08 -0.03 7.96 -51.93 -0.41 -0.44 16 28 H 0.38 -1.69 8.74 45.56 0.40 -1.30 16 29 H 0.41 -0.57 8.95 -40.82 -0.37 -0.93 16 30 H 0.10 -0.35 7.96 -51.93 -0.41 -0.77 16 31 H 0.09 -0.16 6.67 -51.93 -0.35 -0.51 16 32 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 33 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 34 H 0.07 -0.09 7.62 -51.93 -0.40 -0.49 16 35 H 0.07 -0.20 7.68 -51.93 -0.40 -0.60 16 36 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 38 H 0.12 -0.26 7.42 -52.49 -0.39 -0.65 16 39 H 0.12 -0.13 8.06 -52.48 -0.42 -0.56 16 40 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 41 H 0.12 -0.12 8.06 -52.48 -0.42 -0.54 16 42 H 0.12 -0.21 7.42 -52.49 -0.39 -0.60 16 LS Contribution 362.04 15.07 5.46 5.46 Total: 0.00 -6.93 362.04 -10.66 -17.59 By element: Atomic # 1 Polarization: -6.10 SS G_CDS: -5.63 Total: -11.73 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.13 Total: 0.93 kcal Atomic # 7 Polarization: -2.11 SS G_CDS: -0.15 Total: -2.27 kcal Atomic # 8 Polarization: 0.00 SS G_CDS: -0.35 Total: -0.35 kcal Atomic # 14 Polarization: -0.94 SS G_CDS: -6.59 Total: -7.52 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.28 Total: -2.11 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -6.93 -10.66 -17.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_8986900_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.815 kcal (2) G-P(sol) polarization free energy of solvation -6.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds