Wall clock time and date at job start Mon Mar 8 2021 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86301 * 109.47094 * 2 1 4 4 C 1.86294 * 109.47151 * 120.00195 * 2 1 3 5 5 N 1.46492 * 109.47081 * 300.00115 * 4 2 1 6 6 C 1.39143 * 120.00255 * 95.00093 * 5 4 2 7 7 C 1.39303 * 119.72139 * 179.97438 * 6 5 4 8 8 F 1.35106 * 120.46772 * 0.02562 * 7 6 5 9 9 C 1.38478 * 119.06227 * 180.02562 * 7 6 5 10 10 C 1.38859 * 118.48631 * 359.97438 * 9 7 6 11 11 C 1.50698 * 120.33261 * 179.97438 * 10 9 7 12 12 O 1.42894 * 109.47113 * 300.02683 * 11 10 9 13 13 Si 1.86295 * 109.47367 * 180.02562 * 11 10 9 14 14 H 1.48499 * 109.46901 * 60.00243 * 13 11 10 15 15 H 1.48505 * 109.47225 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47700 * 300.00184 * 13 11 10 17 17 C 1.38035 * 119.34181 * 0.02562 * 10 9 7 18 18 N 1.31977 * 120.90084 * 0.02562 * 17 10 9 19 19 C 1.86803 * 109.46892 * 240.00398 * 2 1 3 20 20 C 1.38238 * 119.99741 * 149.72798 * 19 2 1 21 21 C 1.38237 * 119.99727 * 179.76508 * 20 19 2 22 22 C 1.38232 * 120.00169 * 0.50525 * 21 20 19 23 23 C 1.38237 * 119.99946 * 359.74475 * 22 21 20 24 24 C 1.38232 * 120.00292 * 329.99831 * 19 2 1 25 25 H 1.08997 * 109.47561 * 300.00021 * 1 2 3 26 26 H 1.09008 * 109.47116 * 59.99878 * 1 2 3 27 27 H 1.08998 * 109.47463 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47007 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47415 * 300.00334 * 3 2 1 30 30 H 1.08998 * 109.47193 * 60.00333 * 3 2 1 31 31 H 1.09008 * 109.47001 * 179.97438 * 4 2 1 32 32 H 1.09005 * 109.47013 * 60.00419 * 4 2 1 33 33 H 0.97007 * 119.99972 * 274.99902 * 5 4 2 34 34 H 1.08000 * 120.76199 * 180.02562 * 9 7 6 35 35 H 1.09006 * 109.46980 * 60.02014 * 11 10 9 36 36 H 0.96710 * 113.99920 * 299.99291 * 12 11 10 37 37 H 1.08004 * 119.54711 * 179.72417 * 17 10 9 38 38 H 1.08001 * 120.00429 * 359.97438 * 20 19 2 39 39 H 1.08001 * 119.99920 * 180.23241 * 21 20 19 40 40 H 1.07996 * 120.00454 * 179.72678 * 22 21 20 41 41 H 1.07998 * 120.00322 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.99733 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 1.5211 5 7 1.9956 -0.1877 2.7172 6 6 0.8331 -0.6229 3.3459 7 6 0.3743 0.0378 4.4833 8 9 1.0498 1.0976 4.9792 9 6 -0.7838 -0.4071 5.0984 10 6 -1.4454 -1.4996 4.5535 11 6 -2.7091 -2.0189 5.1895 12 8 -2.4357 -2.4208 6.5332 13 14 -3.3373 -3.4803 4.2198 14 1 -2.3085 -4.5513 4.2166 15 1 -4.5829 -3.9916 4.8462 16 1 -3.6214 -3.0628 2.8234 17 6 -0.9335 -2.1060 3.4241 18 7 0.1731 -1.6617 2.8587 19 6 2.4856 -0.8805 -1.5253 20 6 3.6908 -0.5113 -2.0929 21 6 4.1538 -1.1661 -3.2189 22 6 3.4068 -2.1831 -3.7833 23 6 2.1991 -2.5488 -3.2187 24 6 1.7385 -1.8975 -2.0897 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.5739 1.7564 0.0005 29 1 2.1206 2.2703 -0.8899 30 1 2.1207 2.2703 0.8900 31 1 3.5740 -0.8786 1.5208 32 1 2.1207 -1.9060 1.5210 33 1 2.4828 0.5729 3.0710 34 1 -1.1644 0.0848 5.9813 35 1 -3.4642 -1.2327 5.1920 36 1 -1.7711 -3.1195 6.6073 37 1 -1.4430 -2.9588 3.0001 38 1 4.2722 0.2864 -1.6548 39 1 5.0972 -0.8802 -3.6601 40 1 3.7664 -2.6917 -4.6654 41 1 1.6152 -3.3431 -3.6598 42 1 0.7951 -2.1832 -1.6486 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_8986900_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:56:15 Heat of formation + Delta-G solvation = -50.120491 kcal Electronic energy + Delta-G solvation = -24198.573966 eV Core-core repulsion = 20602.426688 eV Total energy + Delta-G solvation = -3596.147278 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.122 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.81543 -41.34873 -39.66475 -38.20223 -36.54065 -33.19049 -31.77908 -31.74068 -31.55597 -29.16697 -28.45611 -27.74737 -26.00026 -24.19340 -23.22657 -22.97981 -22.76307 -19.58422 -18.47029 -18.28536 -17.96937 -17.62717 -16.95926 -16.21743 -16.04569 -15.99445 -15.69526 -15.63195 -15.59831 -15.24450 -14.71741 -14.36416 -14.31012 -14.15590 -14.08067 -13.94803 -13.66669 -13.52932 -13.38202 -13.25636 -12.99648 -12.89068 -12.63694 -12.26669 -12.19936 -12.02494 -11.93174 -10.94905 -10.94369 -10.87558 -10.56260 -10.49432 -10.44003 -9.73661 -9.72462 -8.50354 -0.03281 0.16481 0.38873 0.58682 1.09537 1.39251 1.45213 1.59834 1.73732 1.80852 1.87404 2.17099 2.45785 2.64174 3.01680 3.10232 3.33222 3.42863 3.61922 3.87029 4.04830 4.09153 4.18876 4.26236 4.32252 4.47703 4.54998 4.59156 4.64458 4.66211 4.72530 4.73350 4.78749 4.81014 4.96447 5.02476 5.07784 5.19549 5.38057 5.41693 5.54482 5.60818 5.65610 5.69117 5.96439 6.19028 6.19540 6.50381 6.99480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.438 4.438 2 Si 1.057 2.943 3 C -0.449 4.449 4 C -0.168 4.168 5 N -0.699 5.699 6 C 0.388 3.612 7 C -0.024 4.024 8 F -0.134 7.134 9 C -0.034 4.034 10 C -0.214 4.214 11 C -0.066 4.066 12 O -0.539 6.539 13 Si 0.941 3.059 14 H -0.248 1.248 15 H -0.250 1.250 16 H -0.246 1.246 17 C 0.141 3.859 18 N -0.508 5.508 19 C -0.373 4.373 20 C -0.089 4.089 21 C -0.133 4.133 22 C -0.109 4.109 23 C -0.133 4.133 24 C -0.086 4.086 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.415 0.585 34 H 0.150 0.850 35 H 0.119 0.881 36 H 0.377 0.623 37 H 0.156 0.844 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 -0.528 -0.947 1.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.546 4.546 2 Si 1.247 2.753 3 C -0.557 4.557 4 C -0.339 4.339 5 N -0.331 5.331 6 C 0.149 3.851 7 C -0.050 4.050 8 F -0.113 7.113 9 C -0.061 4.061 10 C -0.219 4.219 11 C -0.178 4.178 12 O -0.344 6.344 13 Si 0.763 3.237 14 H -0.171 1.171 15 H -0.173 1.173 16 H -0.170 1.170 17 C -0.017 4.017 18 N -0.225 5.225 19 C -0.416 4.416 20 C -0.107 4.107 21 C -0.152 4.152 22 C -0.127 4.127 23 C -0.151 4.151 24 C -0.104 4.104 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.251 0.749 34 H 0.168 0.832 35 H 0.137 0.863 36 H 0.224 0.776 37 H 0.173 0.827 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.033 -1.302 -2.219 2.573 hybrid contribution 0.734 0.796 0.850 1.377 sum 0.702 -0.506 -1.369 1.619 Atomic orbital electron populations 1.26023 1.19779 1.04814 1.03976 0.78478 0.67699 0.66334 0.62818 1.26122 1.06202 1.18528 1.04799 1.26417 1.03317 1.05227 0.98943 1.44049 1.24175 1.35083 1.29749 1.18407 0.88535 0.90070 0.88098 1.17989 0.96878 0.92033 0.98120 1.91491 1.79160 1.53630 1.87037 1.21246 0.91603 0.94481 0.98727 1.20872 1.01329 0.99933 0.99802 1.24764 0.96589 1.07722 0.88706 1.86522 1.63858 1.59687 1.24342 0.85820 0.81340 0.77357 0.79209 1.17127 1.17350 1.16989 1.22350 0.90637 0.97255 0.91444 1.67238 1.09653 1.12928 1.32723 1.27234 0.98816 1.03327 1.12199 1.21096 0.95783 0.98478 0.95379 1.21269 0.99992 0.96955 0.96937 1.21237 0.94930 0.97059 0.99503 1.21283 0.96635 1.00284 0.96888 1.21109 0.99076 0.95021 0.95149 0.91555 0.91360 0.90691 0.91088 0.90827 0.91013 0.90146 0.88077 0.74855 0.83205 0.86302 0.77599 0.82725 0.86303 0.86328 0.86272 0.86299 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.19 8.53 101.05 0.86 1.05 16 2 Si 1.06 -2.05 11.38 -169.99 -1.94 -3.99 16 3 C -0.45 0.76 8.52 101.05 0.86 1.62 16 4 C -0.17 0.23 5.33 59.84 0.32 0.55 16 5 N -0.70 0.38 4.82 -8.57 -0.04 0.33 16 6 C 0.39 0.45 7.38 -154.85 -1.14 -0.70 16 7 C -0.02 -0.03 7.35 -39.10 -0.29 -0.32 16 8 F -0.13 -0.25 16.65 2.25 0.04 -0.21 16 9 C -0.03 -0.01 9.75 -39.26 -0.38 -0.40 16 10 C -0.21 0.08 5.40 -104.47 -0.56 -0.49 16 11 C -0.07 0.10 2.84 36.00 0.10 0.20 16 12 O -0.54 0.34 12.78 -35.23 -0.45 -0.11 16 13 Si 0.94 -1.55 25.10 -169.99 -4.27 -5.82 16 14 H -0.25 0.37 7.11 56.52 0.40 0.78 16 15 H -0.25 0.01 7.11 56.52 0.40 0.41 16 16 H -0.25 0.31 7.11 56.52 0.40 0.71 16 17 C 0.14 0.02 9.84 -17.56 -0.17 -0.15 16 18 N -0.51 -0.66 9.03 -12.36 -0.11 -0.77 16 19 C -0.37 -0.04 4.59 -39.58 -0.18 -0.22 16 20 C -0.09 -0.04 9.29 -39.58 -0.37 -0.41 16 21 C -0.13 -0.13 10.05 -39.58 -0.40 -0.53 16 22 C -0.11 -0.13 10.05 -39.58 -0.40 -0.52 16 23 C -0.13 -0.15 10.05 -39.58 -0.40 -0.55 16 24 C -0.09 -0.06 9.29 -39.58 -0.37 -0.43 16 25 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 26 H 0.07 -0.03 7.96 -51.92 -0.41 -0.44 16 27 H 0.07 -0.02 7.68 -51.93 -0.40 -0.42 16 28 H 0.07 -0.16 7.68 -51.93 -0.40 -0.56 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.08 -0.20 7.96 -51.92 -0.41 -0.61 16 32 H 0.10 -0.02 7.04 -51.93 -0.37 -0.39 16 33 H 0.41 -0.76 8.30 -40.82 -0.34 -1.10 16 34 H 0.15 -0.09 8.06 -52.49 -0.42 -0.51 16 35 H 0.12 -0.27 7.96 -51.93 -0.41 -0.69 16 36 H 0.38 -1.38 8.70 45.56 0.40 -0.99 16 37 H 0.16 -0.24 4.88 -52.48 -0.26 -0.49 16 38 H 0.12 -0.18 7.42 -52.49 -0.39 -0.57 16 39 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 40 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 41 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 42 H 0.12 -0.10 7.43 -52.49 -0.39 -0.49 16 LS Contribution 358.48 15.07 5.40 5.40 Total: 0.00 -5.68 358.48 -8.99 -14.67 By element: Atomic # 1 Polarization: -3.13 SS G_CDS: -5.11 Total: -8.24 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.52 Total: -1.28 kcal Atomic # 7 Polarization: -0.28 SS G_CDS: -0.15 Total: -0.43 kcal Atomic # 8 Polarization: 0.34 SS G_CDS: -0.45 Total: -0.11 kcal Atomic # 9 Polarization: -0.25 SS G_CDS: 0.04 Total: -0.21 kcal Atomic # 14 Polarization: -3.60 SS G_CDS: -6.20 Total: -9.80 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -5.68 -8.99 -14.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_8986900_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.446 kcal (2) G-P(sol) polarization free energy of solvation -5.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds