Wall clock time and date at job start Mon Mar 8 2021 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86301 * 109.47094 * 2 1 4 4 C 1.86294 * 109.47151 * 120.00195 * 2 1 3 5 5 N 1.46492 * 109.47081 * 300.00115 * 4 2 1 6 6 C 1.39143 * 120.00255 * 95.00093 * 5 4 2 7 7 C 1.39303 * 119.72139 * 179.97438 * 6 5 4 8 8 F 1.35106 * 120.46772 * 0.02562 * 7 6 5 9 9 C 1.38478 * 119.06227 * 180.02562 * 7 6 5 10 10 C 1.38859 * 118.48631 * 359.97438 * 9 7 6 11 11 C 1.50698 * 120.33261 * 179.97438 * 10 9 7 12 12 O 1.42894 * 109.47113 * 300.02683 * 11 10 9 13 13 Si 1.86295 * 109.47367 * 180.02562 * 11 10 9 14 14 H 1.48499 * 109.46901 * 60.00243 * 13 11 10 15 15 H 1.48505 * 109.47225 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47700 * 300.00184 * 13 11 10 17 17 C 1.38035 * 119.34181 * 0.02562 * 10 9 7 18 18 N 1.31977 * 120.90084 * 0.02562 * 17 10 9 19 19 C 1.86803 * 109.46892 * 240.00398 * 2 1 3 20 20 C 1.38238 * 119.99741 * 149.72798 * 19 2 1 21 21 C 1.38237 * 119.99727 * 179.76508 * 20 19 2 22 22 C 1.38232 * 120.00169 * 0.50525 * 21 20 19 23 23 C 1.38237 * 119.99946 * 359.74475 * 22 21 20 24 24 C 1.38232 * 120.00292 * 329.99831 * 19 2 1 25 25 H 1.08997 * 109.47561 * 300.00021 * 1 2 3 26 26 H 1.09008 * 109.47116 * 59.99878 * 1 2 3 27 27 H 1.08998 * 109.47463 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47007 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47415 * 300.00334 * 3 2 1 30 30 H 1.08998 * 109.47193 * 60.00333 * 3 2 1 31 31 H 1.09008 * 109.47001 * 179.97438 * 4 2 1 32 32 H 1.09005 * 109.47013 * 60.00419 * 4 2 1 33 33 H 0.97007 * 119.99972 * 274.99902 * 5 4 2 34 34 H 1.08000 * 120.76199 * 180.02562 * 9 7 6 35 35 H 1.09006 * 109.46980 * 60.02014 * 11 10 9 36 36 H 0.96710 * 113.99920 * 299.99291 * 12 11 10 37 37 H 1.08004 * 119.54711 * 179.72417 * 17 10 9 38 38 H 1.08001 * 120.00429 * 359.97438 * 20 19 2 39 39 H 1.08001 * 119.99920 * 180.23241 * 21 20 19 40 40 H 1.07996 * 120.00454 * 179.72678 * 22 21 20 41 41 H 1.07998 * 120.00322 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.99733 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 1.5211 5 7 1.9956 -0.1877 2.7172 6 6 0.8331 -0.6229 3.3459 7 6 0.3743 0.0378 4.4833 8 9 1.0498 1.0976 4.9792 9 6 -0.7838 -0.4071 5.0984 10 6 -1.4454 -1.4996 4.5535 11 6 -2.7091 -2.0189 5.1895 12 8 -2.4357 -2.4208 6.5332 13 14 -3.3373 -3.4803 4.2198 14 1 -2.3085 -4.5513 4.2166 15 1 -4.5829 -3.9916 4.8462 16 1 -3.6214 -3.0628 2.8234 17 6 -0.9335 -2.1060 3.4241 18 7 0.1731 -1.6617 2.8587 19 6 2.4856 -0.8805 -1.5253 20 6 3.6908 -0.5113 -2.0929 21 6 4.1538 -1.1661 -3.2189 22 6 3.4068 -2.1831 -3.7833 23 6 2.1991 -2.5488 -3.2187 24 6 1.7385 -1.8975 -2.0897 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.5739 1.7564 0.0005 29 1 2.1206 2.2703 -0.8899 30 1 2.1207 2.2703 0.8900 31 1 3.5740 -0.8786 1.5208 32 1 2.1207 -1.9060 1.5210 33 1 2.4828 0.5729 3.0710 34 1 -1.1644 0.0848 5.9813 35 1 -3.4642 -1.2327 5.1920 36 1 -1.7711 -3.1195 6.6073 37 1 -1.4430 -2.9588 3.0001 38 1 4.2722 0.2864 -1.6548 39 1 5.0972 -0.8802 -3.6601 40 1 3.7664 -2.6917 -4.6654 41 1 1.6152 -3.3431 -3.6598 42 1 0.7951 -2.1832 -1.6486 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_8986900_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:56:15 Heat of formation + Delta-G solvation = -41.574119 kcal Electronic energy + Delta-G solvation = -24198.203367 eV Core-core repulsion = 20602.426688 eV Total energy + Delta-G solvation = -3595.776679 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.122 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.88960 -41.33998 -39.64931 -38.12827 -36.48187 -33.18840 -31.76693 -31.71773 -31.54423 -29.06757 -28.36832 -27.67605 -25.94646 -24.17942 -23.22502 -22.97404 -22.74322 -19.56553 -18.43189 -18.28981 -17.95039 -17.59919 -16.99415 -16.15620 -15.99996 -15.93775 -15.66562 -15.60789 -15.58670 -15.21223 -14.67645 -14.31264 -14.27792 -14.14130 -14.04615 -13.85368 -13.60207 -13.51738 -13.33924 -13.18319 -12.93053 -12.82367 -12.54921 -12.20772 -12.08727 -11.98537 -11.90265 -10.90396 -10.86660 -10.82398 -10.55655 -10.49118 -10.35618 -9.75691 -9.72959 -8.46539 -0.04663 0.16544 0.38855 0.56515 1.21627 1.51472 1.55862 1.68987 1.84652 1.94413 1.97216 2.24355 2.53314 2.64623 3.00596 3.10118 3.36358 3.53757 3.72256 3.89710 4.08251 4.12072 4.21298 4.29928 4.43430 4.53548 4.61318 4.62436 4.72161 4.78354 4.79055 4.81625 4.82586 4.84368 5.03655 5.08045 5.09194 5.21186 5.40791 5.54161 5.57357 5.61040 5.66985 5.67875 6.00750 6.20882 6.25128 6.74544 7.02040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.118 2.882 3 C -0.456 4.456 4 C -0.176 4.176 5 N -0.695 5.695 6 C 0.379 3.621 7 C -0.040 4.040 8 F -0.140 7.140 9 C -0.037 4.037 10 C -0.210 4.210 11 C -0.063 4.063 12 O -0.553 6.553 13 Si 0.971 3.029 14 H -0.248 1.248 15 H -0.273 1.273 16 H -0.250 1.250 17 C 0.134 3.866 18 N -0.520 5.520 19 C -0.383 4.383 20 C -0.101 4.101 21 C -0.149 4.149 22 C -0.126 4.126 23 C -0.150 4.150 24 C -0.101 4.101 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.420 0.580 34 H 0.157 0.843 35 H 0.127 0.873 36 H 0.389 0.611 37 H 0.169 0.831 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.581 -0.332 -0.781 1.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.304 2.696 3 C -0.564 4.564 4 C -0.346 4.346 5 N -0.328 5.328 6 C 0.140 3.860 7 C -0.066 4.066 8 F -0.119 7.119 9 C -0.063 4.063 10 C -0.216 4.216 11 C -0.174 4.174 12 O -0.360 6.360 13 Si 0.795 3.205 14 H -0.171 1.171 15 H -0.198 1.198 16 H -0.174 1.174 17 C -0.023 4.023 18 N -0.238 5.238 19 C -0.424 4.424 20 C -0.119 4.119 21 C -0.167 4.167 22 C -0.144 4.144 23 C -0.168 4.168 24 C -0.119 4.119 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.258 0.742 34 H 0.175 0.825 35 H 0.145 0.855 36 H 0.238 0.762 37 H 0.186 0.814 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.325 -1.114 -2.066 2.369 hybrid contribution 0.603 0.703 0.792 1.219 sum 0.928 -0.411 -1.274 1.628 Atomic orbital electron populations 1.26217 1.21732 1.04404 1.03411 0.77557 0.65554 0.65471 0.61054 1.26190 1.07034 1.18460 1.04698 1.26558 1.04335 1.04752 0.98950 1.44105 1.23718 1.35175 1.29755 1.18546 0.89033 0.90156 0.88270 1.18133 0.97472 0.92344 0.98690 1.91468 1.79362 1.53949 1.87165 1.21402 0.91370 0.94625 0.98895 1.20952 1.01525 0.99546 0.99549 1.24804 0.96153 1.08074 0.88392 1.86493 1.64462 1.60363 1.24701 0.85390 0.79930 0.76827 0.78387 1.17107 1.19810 1.17441 1.22648 0.90489 0.97601 0.91610 1.67269 1.10175 1.13219 1.33148 1.27681 0.98706 1.03136 1.12875 1.21429 0.96135 0.98952 0.95349 1.21559 1.00640 0.97101 0.97393 1.21481 0.95222 0.97551 1.00144 1.21536 0.97011 1.00864 0.97345 1.21374 0.99762 0.95407 0.95340 0.92445 0.91513 0.91053 0.90013 0.91156 0.90902 0.88634 0.89046 0.74193 0.82502 0.85501 0.76203 0.81427 0.84361 0.85138 0.85311 0.85391 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.21 8.53 113.37 0.97 1.17 16 2 Si 1.12 -4.66 11.38 68.60 0.78 -3.88 16 3 C -0.46 1.92 8.52 113.37 0.97 2.88 16 4 C -0.18 0.54 5.33 127.77 0.68 1.22 16 5 N -0.70 0.80 4.82 -181.03 -0.87 -0.07 16 6 C 0.38 0.98 7.38 133.07 0.98 1.96 16 7 C -0.04 -0.12 7.35 22.58 0.17 0.04 16 8 F -0.14 -0.59 16.65 44.97 0.75 0.16 16 9 C -0.04 -0.03 9.75 22.48 0.22 0.19 16 10 C -0.21 0.17 5.40 -19.76 -0.11 0.06 16 11 C -0.06 0.21 2.84 71.24 0.20 0.41 16 12 O -0.55 0.89 12.78 -148.98 -1.90 -1.02 16 13 Si 0.97 -3.32 25.10 68.60 1.72 -1.60 16 14 H -0.25 0.88 7.11 99.48 0.71 1.58 16 15 H -0.27 -0.13 7.11 99.48 0.71 0.58 16 16 H -0.25 0.69 7.11 99.48 0.71 1.40 16 17 C 0.13 0.05 9.84 84.62 0.83 0.88 16 18 N -0.52 -1.47 9.03 -193.03 -1.74 -3.21 16 19 C -0.38 -0.04 4.59 22.27 0.10 0.06 16 20 C -0.10 -0.05 9.29 22.27 0.21 0.15 16 21 C -0.15 -0.31 10.05 22.27 0.22 -0.08 16 22 C -0.13 -0.36 10.05 22.27 0.22 -0.13 16 23 C -0.15 -0.43 10.05 22.27 0.22 -0.21 16 24 C -0.10 -0.19 9.29 22.27 0.21 0.02 16 25 H 0.06 0.09 7.96 -2.39 -0.02 0.07 16 26 H 0.07 -0.03 7.96 -2.38 -0.02 -0.04 16 27 H 0.07 0.01 7.68 -2.39 -0.02 -0.01 16 28 H 0.08 -0.50 7.68 -2.39 -0.02 -0.52 16 29 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 30 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 31 H 0.10 -0.58 7.96 -2.38 -0.02 -0.60 16 32 H 0.09 -0.05 7.04 -2.38 -0.02 -0.06 16 33 H 0.42 -1.62 8.30 -92.70 -0.77 -2.39 16 34 H 0.16 -0.17 8.06 -2.91 -0.02 -0.20 16 35 H 0.13 -0.64 7.96 -2.38 -0.02 -0.66 16 36 H 0.39 -2.98 8.70 -74.05 -0.64 -3.63 16 37 H 0.17 -0.55 4.88 -2.91 -0.01 -0.56 16 38 H 0.14 -0.59 7.42 -2.91 -0.02 -0.61 16 39 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 40 H 0.13 -0.05 8.06 -2.91 -0.02 -0.07 16 41 H 0.13 -0.03 8.06 -2.91 -0.02 -0.05 16 42 H 0.13 -0.15 7.43 -2.91 -0.02 -0.17 16 Total: 0.00 -12.90 358.48 5.22 -7.68 By element: Atomic # 1 Polarization: -7.07 SS G_CDS: 0.39 Total: -6.68 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 6.10 Total: 8.62 kcal Atomic # 7 Polarization: -0.67 SS G_CDS: -2.62 Total: -3.28 kcal Atomic # 8 Polarization: 0.89 SS G_CDS: -1.90 Total: -1.02 kcal Atomic # 9 Polarization: -0.59 SS G_CDS: 0.75 Total: 0.16 kcal Atomic # 14 Polarization: -7.99 SS G_CDS: 2.50 Total: -5.48 kcal Total: -12.90 5.22 -7.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_8986900_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.895 kcal (2) G-P(sol) polarization free energy of solvation -12.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds