Wall clock time and date at job start Mon Mar 8 2021 09:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38403 * 119.99659 * 2 1 4 4 N 1.32492 * 119.22010 * 0.02562 * 3 2 1 5 5 C 1.32274 * 120.73869 * 179.97438 * 4 3 2 6 6 C 1.38606 * 119.19912 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.72079 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47417 * 65.00050 * 7 6 5 9 9 Si 1.86301 * 109.47149 * 185.00066 * 7 6 5 10 10 C 1.38604 * 118.55766 * 0.25142 * 6 5 4 11 11 N 1.32275 * 119.19636 * 359.51533 * 10 6 5 12 12 C 1.46498 * 119.99956 * 180.02562 * 2 1 3 13 13 H 1.09001 * 109.47176 * 179.97438 * 12 2 1 14 14 C 1.53003 * 109.46922 * 299.99875 * 12 2 1 15 15 C 1.53003 * 109.46929 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47141 * 299.99647 * 15 14 12 17 17 H 1.08999 * 109.47373 * 299.99996 * 16 15 14 18 18 O 1.42902 * 109.47193 * 180.02562 * 16 15 14 19 19 C 1.52998 * 109.47140 * 60.00088 * 16 15 14 20 20 C 1.52995 * 109.47213 * 299.99818 * 19 16 15 21 21 H 1.08999 * 109.47160 * 89.99527 * 1 2 3 22 22 H 1.09000 * 109.46970 * 209.99831 * 1 2 3 23 23 H 1.08998 * 109.47089 * 329.99250 * 1 2 3 24 24 H 1.08005 * 120.40281 * 179.97438 * 5 4 3 25 25 H 1.09002 * 109.47060 * 305.00076 * 7 6 5 26 26 H 0.96708 * 114.00101 * 59.99427 * 8 7 6 27 27 H 1.48494 * 109.99914 * 58.67711 * 9 7 6 28 28 H 1.48493 * 110.00101 * 179.97438 * 9 7 6 29 29 H 1.08001 * 120.40221 * 179.72136 * 10 6 5 30 30 H 1.09003 * 109.46836 * 300.00004 * 14 12 2 31 31 H 1.08991 * 109.47380 * 59.99747 * 14 12 2 32 32 H 1.09004 * 109.46816 * 179.97438 * 15 14 12 33 33 H 1.08999 * 109.46984 * 59.99881 * 15 14 12 34 34 H 0.96700 * 113.99811 * 60.00480 * 18 16 15 35 35 H 1.09003 * 109.47055 * 180.02562 * 19 16 15 36 36 H 1.09001 * 109.47144 * 60.00263 * 19 16 15 37 37 H 1.09001 * 109.47430 * 300.00270 * 20 19 16 38 38 H 1.09007 * 109.47321 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1570 1.1986 0.0000 4 7 1.4789 2.3369 0.0005 5 6 2.1096 3.4996 0.0010 6 6 3.4956 3.5170 0.0016 7 6 4.2491 4.8221 0.0016 8 8 3.9937 5.5196 1.2224 9 14 6.0750 4.4850 -0.1507 10 6 4.1734 2.3081 -0.0038 11 7 3.4818 1.1805 0.0005 12 6 2.1975 -1.2687 -0.0006 13 1 3.2692 -1.0696 -0.0009 14 6 1.8279 -2.0715 1.2484 15 6 2.5934 -3.3963 1.2481 16 6 2.2243 -4.1983 -0.0014 17 1 1.1527 -4.3979 -0.0017 18 8 2.9388 -5.4359 -0.0013 19 6 2.5938 -3.3956 -1.2503 20 6 1.8284 -2.0709 -1.2501 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.5514 4.4242 0.0010 25 1 3.9206 5.4314 -0.8405 26 1 4.2615 5.0354 2.0155 27 1 6.3499 3.7321 -1.4007 28 1 6.8292 5.7642 -0.1525 29 1 5.2532 2.2869 -0.0080 30 1 2.0913 -1.5003 2.1386 31 1 0.7563 -2.2706 1.2484 32 1 2.3304 -3.9680 2.1381 33 1 3.6649 -3.1967 1.2484 34 1 2.7525 -5.9975 0.7635 35 1 2.3304 -3.9668 -2.1405 36 1 3.6654 -3.1960 -1.2501 37 1 0.7568 -2.2704 -1.2503 38 1 2.0920 -1.4987 -2.1397 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9156392_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:51:02 Heat of formation + Delta-G solvation = -16.163905 kcal Electronic energy + Delta-G solvation = -20708.679820 eV Core-core repulsion = 17553.160788 eV Total energy + Delta-G solvation = -3155.519032 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.19316 -40.35222 -38.31023 -37.51365 -35.49488 -34.73342 -32.73171 -31.89589 -29.81618 -28.29351 -26.08135 -25.39807 -23.83930 -23.52454 -22.17233 -20.68696 -19.01987 -18.91998 -18.20807 -17.91309 -16.74176 -16.66826 -16.23984 -16.03632 -15.63726 -15.54113 -15.24905 -14.88782 -14.62727 -14.38838 -14.11699 -14.04017 -13.40633 -13.27348 -13.19880 -13.13536 -12.71645 -12.31424 -12.26551 -12.21035 -11.91573 -11.79506 -11.62245 -11.41960 -11.04099 -10.74117 -10.53479 -10.02500 -8.91476 -5.00865 0.03026 0.12186 1.31175 1.56709 1.63556 1.97686 2.76310 3.11560 3.26861 3.46363 3.54840 3.62296 3.68228 3.70671 3.76568 4.00467 4.11524 4.18817 4.20847 4.28664 4.32924 4.38825 4.43787 4.54830 4.61859 4.65314 4.77613 4.81081 4.88828 4.97089 5.01082 5.07789 5.10227 5.22313 5.26859 5.38859 5.80405 5.82883 6.32471 6.77813 6.88868 7.18679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.581 5.581 3 C 0.550 3.450 4 N -0.585 5.585 5 C 0.212 3.788 6 C -0.290 4.290 7 C -0.045 4.045 8 O -0.554 6.554 9 Si 0.766 3.234 10 C 0.195 3.805 11 N -0.581 5.581 12 C 0.153 3.847 13 H 0.095 0.905 14 C -0.118 4.118 15 C -0.141 4.141 16 C 0.104 3.896 17 H 0.067 0.933 18 O -0.588 6.588 19 C -0.109 4.109 20 C -0.115 4.115 21 H 0.053 0.947 22 H 0.090 0.910 23 H 0.072 0.928 24 H 0.182 0.818 25 H 0.113 0.887 26 H 0.395 0.605 27 H -0.286 1.286 28 H -0.294 1.294 29 H 0.188 0.812 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.395 0.605 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.616 -2.048 3.250 3.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.296 5.296 3 C 0.195 3.805 4 N -0.308 5.308 5 C 0.045 3.955 6 C -0.298 4.298 7 C -0.157 4.157 8 O -0.362 6.362 9 Si 0.672 3.328 10 C 0.028 3.972 11 N -0.304 5.304 12 C 0.049 3.951 13 H 0.113 0.887 14 C -0.156 4.156 15 C -0.179 4.179 16 C 0.046 3.954 17 H 0.084 0.916 18 O -0.397 6.397 19 C -0.147 4.147 20 C -0.154 4.154 21 H 0.072 0.928 22 H 0.109 0.891 23 H 0.091 0.909 24 H 0.199 0.801 25 H 0.131 0.869 26 H 0.244 0.756 27 H -0.213 1.213 28 H -0.222 1.222 29 H 0.204 0.796 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.244 0.756 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.549 -2.325 1.829 3.009 hybrid contribution -0.295 0.895 0.028 0.942 sum -0.844 -1.430 1.857 2.491 Atomic orbital electron populations 1.21721 0.76892 1.03823 1.02086 1.46335 1.06306 1.01171 1.75755 1.19612 0.85645 0.86990 0.88296 1.68012 1.41291 0.98313 1.23165 1.23164 0.91710 0.95258 0.85387 1.21753 0.96811 0.97823 1.13404 1.24774 1.09995 0.90699 0.90236 1.86479 1.87227 1.46652 1.15805 0.93987 0.73102 0.80241 0.85467 1.23164 1.00640 0.86218 0.87169 1.67904 1.07036 1.32284 1.23132 1.21224 0.97530 0.81060 0.95255 0.88660 1.21777 1.01436 0.95459 0.96971 1.22160 1.00999 0.95993 0.98775 1.21854 0.95336 0.83634 0.94622 0.91556 1.86487 1.70782 1.31483 1.50954 1.21396 1.00760 0.94780 0.97768 1.21756 1.01334 0.94957 0.97335 0.92798 0.89106 0.90928 0.80124 0.86937 0.75559 1.21285 1.22193 0.79571 0.91850 0.90201 0.89737 0.91678 0.75551 0.91118 0.91893 0.90274 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 -0.07 9.50 127.77 1.21 1.14 16 2 N -0.58 -1.69 2.86 -711.60 -2.04 -3.72 16 3 C 0.55 3.68 8.17 261.49 2.14 5.81 16 4 N -0.59 -3.87 9.11 -197.98 -1.80 -5.68 16 5 C 0.21 0.59 10.99 84.71 0.93 1.52 16 6 C -0.29 -0.05 5.36 -19.69 -0.11 -0.15 16 7 C -0.05 0.11 2.83 71.24 0.20 0.31 16 8 O -0.55 0.99 12.85 -148.98 -1.91 -0.92 16 9 Si 0.77 -2.76 29.88 68.60 2.05 -0.71 16 10 C 0.20 0.20 9.92 84.71 0.84 1.04 16 11 N -0.58 -3.37 8.85 -197.99 -1.75 -5.12 16 12 C 0.15 0.07 2.54 44.99 0.11 0.19 16 13 H 0.10 0.37 6.76 -2.39 -0.02 0.36 16 14 C -0.12 0.32 5.18 30.60 0.16 0.48 16 15 C -0.14 0.49 5.54 30.59 0.17 0.66 16 16 C 0.10 -0.19 3.47 30.59 0.11 -0.09 16 17 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 18 O -0.59 -0.44 13.32 -148.98 -1.98 -2.42 16 19 C -0.11 -0.01 5.57 30.59 0.17 0.16 16 20 C -0.12 0.09 5.21 30.59 0.16 0.25 16 21 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 22 H 0.09 -0.46 6.43 -2.39 -0.02 -0.48 16 23 H 0.07 0.10 7.33 -2.39 -0.02 0.08 16 24 H 0.18 -0.16 8.06 -2.91 -0.02 -0.19 16 25 H 0.11 -0.21 7.96 -2.39 -0.02 -0.23 16 26 H 0.39 -3.66 8.70 -74.05 -0.64 -4.31 16 27 H -0.29 -0.45 7.11 99.48 0.71 0.25 16 28 H -0.29 -1.14 7.11 99.48 0.71 -0.43 16 29 H 0.19 -0.90 5.07 -2.91 -0.01 -0.91 16 30 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.08 -0.39 6.66 -2.39 -0.02 -0.41 16 32 H 0.08 -0.51 8.14 -2.38 -0.02 -0.53 16 33 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.39 -2.90 9.08 -74.06 -0.67 -3.58 16 35 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.08 -0.22 7.67 -2.39 -0.02 -0.24 16 38 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 Total: 0.00 -16.55 304.24 -1.54 -18.09 By element: Atomic # 1 Polarization: -10.65 SS G_CDS: -0.20 Total: -10.85 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 6.10 Total: 11.33 kcal Atomic # 7 Polarization: -8.93 SS G_CDS: -5.59 Total: -14.52 kcal Atomic # 8 Polarization: 0.56 SS G_CDS: -3.90 Total: -3.34 kcal Atomic # 14 Polarization: -2.76 SS G_CDS: 2.05 Total: -0.71 kcal Total: -16.55 -1.54 -18.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9156392_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.930 kcal (2) G-P(sol) polarization free energy of solvation -16.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds