Wall clock time and date at job start Mon Mar 8 2021 09:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.39148 * 111.00355 * 2 1 4 4 N 1.32339 * 119.71675 * 236.04590 * 3 2 1 5 5 C 1.32008 * 121.64272 * 180.02562 * 4 3 2 6 6 C 1.37988 * 120.90373 * 0.02774 * 5 4 3 7 7 C 1.50699 * 120.32654 * 179.97438 * 6 5 4 8 8 O 1.42907 * 109.46603 * 245.00060 * 7 6 5 9 9 Si 1.86298 * 109.47032 * 4.99363 * 7 6 5 10 10 C 1.38899 * 119.34424 * 0.22751 * 6 5 4 11 11 C 1.38446 * 118.48880 * 359.50553 * 10 6 5 12 12 F 1.35102 * 120.47832 * 180.26171 * 11 10 6 13 13 C 1.46902 * 111.00116 * 236.04570 * 2 1 3 14 14 H 1.09006 * 109.47348 * 178.95636 * 13 2 1 15 15 C 1.53006 * 109.47062 * 298.95702 * 13 2 1 16 16 C 1.53000 * 109.47175 * 179.97438 * 15 13 2 17 17 C 1.52999 * 109.46974 * 299.99840 * 16 15 13 18 18 H 1.09006 * 109.47206 * 300.00111 * 17 16 15 19 19 O 1.42899 * 109.47020 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.47396 * 60.00057 * 17 16 15 21 21 C 1.52999 * 109.46984 * 58.95480 * 13 2 1 22 22 H 1.08995 * 109.46808 * 59.99789 * 1 2 3 23 23 H 1.08992 * 109.47248 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46888 * 300.00084 * 1 2 3 25 25 H 1.08003 * 119.54652 * 179.97438 * 5 4 3 26 26 H 1.08996 * 109.47117 * 124.99973 * 7 6 5 27 27 H 0.96697 * 114.00527 * 59.99993 * 8 7 6 28 28 H 1.48506 * 109.99834 * 58.68765 * 9 7 6 29 29 H 1.48502 * 110.00011 * 180.02562 * 9 7 6 30 30 H 1.07999 * 120.76107 * 179.75252 * 10 6 5 31 31 H 1.09006 * 109.46753 * 299.99729 * 15 13 2 32 32 H 1.09000 * 109.47038 * 59.99331 * 15 13 2 33 33 H 1.08998 * 109.46915 * 59.99906 * 16 15 13 34 34 H 1.08994 * 109.46929 * 180.02562 * 16 15 13 35 35 H 0.96706 * 113.99446 * 179.97438 * 19 17 16 36 36 H 1.08998 * 109.47082 * 59.99573 * 20 17 16 37 37 H 1.08998 * 109.47424 * 179.97438 * 20 17 16 38 38 H 1.09006 * 109.47206 * 300.00243 * 21 13 2 39 39 H 1.08994 * 109.47032 * 60.00515 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9677 1.2990 0.0000 4 7 2.8021 1.6814 -0.9534 5 6 3.2986 2.9040 -0.9899 6 6 2.9630 3.8342 -0.0275 7 6 3.5378 5.2262 -0.0814 8 8 4.3776 5.4390 1.0551 9 14 4.5397 5.4243 -1.6395 10 6 2.0943 3.4732 0.9945 11 6 1.5848 2.1860 1.0042 12 9 0.7325 1.7937 1.9763 13 6 1.9955 -0.7660 -1.1376 14 1 3.0850 -0.7343 -1.1240 15 6 1.5262 -2.2187 -1.0352 16 6 2.0740 -3.0164 -2.2203 17 6 1.5617 -2.4059 -3.5263 18 1 0.4722 -2.4376 -3.5395 19 8 2.0729 -3.1512 -4.6332 20 6 2.0309 -0.9532 -3.6288 21 6 1.4837 -0.1557 -2.4439 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.9773 3.1798 -1.7834 26 1 2.7270 5.9546 -0.0757 27 1 5.1221 4.8250 1.1146 28 1 3.6852 5.1741 -2.8281 29 1 5.1126 6.7928 -1.7044 30 1 1.8193 4.1817 1.7618 31 1 1.8908 -2.6535 -0.1044 32 1 0.4368 -2.2504 -1.0487 33 1 3.1634 -2.9847 -2.2071 34 1 1.7393 -4.0511 -2.1475 35 1 1.7878 -2.8197 -5.4958 36 1 3.1204 -0.9214 -3.6156 37 1 1.6664 -0.5184 -4.5595 38 1 0.3942 -0.1874 -2.4575 39 1 1.8180 0.8792 -2.5169 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9156392_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:51:17 Heat of formation + Delta-G solvation = -64.482571 kcal Electronic energy + Delta-G solvation = -23411.792142 eV Core-core repulsion = 19850.149791 eV Total energy + Delta-G solvation = -3561.642351 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.11419 -42.08070 -40.34425 -38.49873 -37.50224 -35.41147 -33.56832 -31.94769 -31.79366 -29.54742 -28.04147 -25.84117 -25.04844 -23.82350 -23.14449 -22.18954 -20.58063 -19.11574 -18.64135 -18.23857 -18.16211 -17.57331 -17.14756 -16.69123 -16.15115 -16.13267 -15.76142 -15.58956 -15.40426 -15.38314 -14.81375 -14.41773 -14.39579 -14.13389 -13.76103 -13.65950 -13.28409 -13.14336 -12.89377 -12.72399 -12.47909 -12.45774 -12.16285 -12.06150 -11.60327 -11.32847 -11.05839 -10.91518 -10.62202 -10.53735 -10.42144 -9.18476 -5.00832 -0.30727 -0.10017 1.25256 1.62619 1.96401 2.15174 2.40190 2.97640 3.13007 3.30017 3.38932 3.57301 3.61500 3.73422 3.75647 3.84792 4.02467 4.04842 4.21515 4.23374 4.25836 4.34107 4.37068 4.41406 4.45399 4.50661 4.59332 4.72281 4.80143 4.85091 4.95406 4.97793 5.05993 5.13920 5.15955 5.21393 5.30705 5.42903 5.56549 5.91891 6.62673 6.72936 6.86410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.478 5.478 3 C 0.286 3.714 4 N -0.492 5.492 5 C 0.121 3.879 6 C -0.168 4.168 7 C -0.063 4.063 8 O -0.553 6.553 9 Si 0.772 3.228 10 C -0.061 4.061 11 C 0.016 3.984 12 F -0.131 7.131 13 C 0.098 3.902 14 H 0.085 0.915 15 C -0.107 4.107 16 C -0.109 4.109 17 C 0.103 3.897 18 H 0.060 0.940 19 O -0.588 6.588 20 C -0.136 4.136 21 C -0.141 4.141 22 H 0.047 0.953 23 H 0.102 0.898 24 H 0.082 0.918 25 H 0.187 0.813 26 H 0.116 0.884 27 H 0.397 0.603 28 H -0.279 1.279 29 H -0.295 1.295 30 H 0.159 0.841 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.393 0.607 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 0.497 -2.050 2.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.194 5.194 3 C 0.053 3.947 4 N -0.205 5.205 5 C -0.036 4.036 6 C -0.172 4.172 7 C -0.173 4.173 8 O -0.361 6.361 9 Si 0.677 3.323 10 C -0.088 4.088 11 C -0.008 4.008 12 F -0.109 7.109 13 C -0.009 4.009 14 H 0.104 0.896 15 C -0.145 4.145 16 C -0.147 4.147 17 C 0.044 3.956 18 H 0.078 0.922 19 O -0.396 6.396 20 C -0.174 4.174 21 C -0.180 4.180 22 H 0.065 0.935 23 H 0.121 0.879 24 H 0.100 0.900 25 H 0.203 0.797 26 H 0.133 0.867 27 H 0.247 0.753 28 H -0.205 1.205 29 H -0.223 1.223 30 H 0.176 0.824 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.242 0.758 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.575 0.120 -2.357 2.429 hybrid contribution -1.450 1.307 0.254 1.969 sum -0.876 1.427 -2.103 2.688 Atomic orbital electron populations 1.22830 0.83177 1.05219 1.02652 1.59388 1.10157 1.07329 1.42476 1.20151 0.94568 0.89729 0.90289 1.67887 1.12153 1.18897 1.21592 1.22876 0.96150 0.87343 0.97236 1.21203 1.00522 0.98877 0.96584 1.25076 0.98339 0.92994 1.00919 1.86499 1.43144 1.60554 1.45918 0.93794 0.83444 0.82603 0.72486 1.21570 0.94378 0.93886 0.98930 1.18275 0.97565 0.94738 0.90220 1.91456 1.67771 1.91130 1.60571 1.21681 1.00272 0.92349 0.86549 0.89641 1.21585 1.01602 0.92909 0.98362 1.21407 1.01334 0.99631 0.92323 1.21888 0.96919 0.90097 0.86683 0.92246 1.86485 1.76632 1.58545 1.17966 1.22069 1.01715 0.95077 0.98548 1.22157 1.00302 1.01252 0.94291 0.93473 0.87914 0.89959 0.79685 0.86698 0.75304 1.20507 1.22258 0.82375 0.90452 0.90472 0.91767 0.90978 0.75756 0.91586 0.90848 0.91976 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 8.41 127.69 1.07 1.07 16 2 N -0.48 -1.15 4.74 -702.32 -3.33 -4.48 16 3 C 0.29 1.01 6.03 133.08 0.80 1.81 16 4 N -0.49 -0.90 6.48 -193.02 -1.25 -2.15 16 5 C 0.12 -0.27 9.84 84.61 0.83 0.56 16 6 C -0.17 0.38 5.36 -19.77 -0.11 0.28 16 7 C -0.06 0.25 2.82 71.24 0.20 0.45 16 8 O -0.55 1.49 12.84 -148.98 -1.91 -0.42 16 9 Si 0.77 -4.21 29.83 68.60 2.05 -2.16 16 10 C -0.06 -0.03 9.82 22.48 0.22 0.19 16 11 C 0.02 0.06 7.00 22.59 0.16 0.22 16 12 F -0.13 -0.74 14.80 44.97 0.67 -0.07 16 13 C 0.10 0.06 1.86 44.92 0.08 0.14 16 14 H 0.09 0.29 7.75 -2.38 -0.02 0.27 16 15 C -0.11 0.14 5.01 30.60 0.15 0.29 16 16 C -0.11 -0.02 5.57 30.59 0.17 0.15 16 17 C 0.10 -0.05 3.47 30.59 0.11 0.06 16 18 H 0.06 -0.11 8.14 -2.38 -0.02 -0.13 16 19 O -0.59 -1.10 13.32 -148.98 -1.98 -3.09 16 20 C -0.14 0.20 5.55 30.58 0.17 0.37 16 21 C -0.14 0.08 4.44 30.58 0.14 0.22 16 22 H 0.05 -0.05 6.51 -2.39 -0.02 -0.06 16 23 H 0.10 -0.35 6.13 -2.39 -0.01 -0.36 16 24 H 0.08 0.08 5.73 -2.39 -0.01 0.06 16 25 H 0.19 -1.42 4.91 -2.91 -0.01 -1.44 16 26 H 0.12 -0.39 7.96 -2.39 -0.02 -0.41 16 27 H 0.40 -4.14 8.70 -74.06 -0.64 -4.79 16 28 H -0.28 0.31 7.11 99.48 0.71 1.01 16 29 H -0.29 -0.71 7.11 99.48 0.71 -0.01 16 30 H 0.16 -0.21 8.06 -2.91 -0.02 -0.24 16 31 H 0.08 -0.04 8.14 -2.38 -0.02 -0.06 16 32 H 0.08 -0.24 6.34 -2.39 -0.02 -0.25 16 33 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.39 -2.32 9.08 -74.05 -0.67 -2.99 16 36 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.06 -0.07 6.48 -2.38 -0.02 -0.09 16 39 H 0.08 0.14 5.65 -2.39 -0.01 0.12 16 Total: 0.00 -14.06 303.54 -1.95 -16.01 By element: Atomic # 1 Polarization: -9.26 SS G_CDS: -0.18 Total: -9.44 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 4.00 Total: 5.81 kcal Atomic # 7 Polarization: -2.05 SS G_CDS: -4.58 Total: -6.63 kcal Atomic # 8 Polarization: 0.39 SS G_CDS: -3.90 Total: -3.51 kcal Atomic # 9 Polarization: -0.74 SS G_CDS: 0.67 Total: -0.07 kcal Atomic # 14 Polarization: -4.21 SS G_CDS: 2.05 Total: -2.16 kcal Total: -14.06 -1.95 -16.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9156392_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.474 kcal (2) G-P(sol) polarization free energy of solvation -14.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds