Wall clock time and date at job start Mon Mar 8 2021 08:42:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 Si 1.86297 * 1
3 3 C 1.86306 * 109.47088 * 2 1
4 4 C 1.86299 * 109.47211 * 240.00347 * 2 1 3
5 5 C 1.86298 * 109.47355 * 120.00087 * 2 1 3
6 6 C 1.52996 * 109.47075 * 59.99756 * 5 2 1
7 7 N 1.46498 * 109.47290 * 180.02562 * 6 5 2
8 8 C 1.39008 * 120.00325 * 180.02562 * 7 6 5
9 9 C 1.39097 * 119.70184 * 0.02562 * 8 7 6
10 10 C 1.38343 * 119.09759 * 180.02562 * 9 8 7
11 11 C 1.38841 * 118.50273 * 359.97438 * 10 9 8
12 12 C 1.50706 * 120.33093 * 180.02562 * 11 10 9
13 13 O 1.42895 * 109.47147 * 65.00338 * 12 11 10
14 14 Si 1.86299 * 109.46748 * 184.99980 * 12 11 10
15 15 H 1.48503 * 109.47188 * 60.00070 * 14 12 11
16 16 H 1.48506 * 109.47139 * 179.97438 * 14 12 11
17 17 H 1.48505 * 109.47505 * 299.99883 * 14 12 11
18 18 C 1.38065 * 119.33085 * 0.27476 * 11 10 9
19 19 N 1.31943 * 120.85171 * 359.40961 * 18 11 10
20 20 H 1.09008 * 109.47194 * 300.00056 * 1 2 3
21 21 H 1.08995 * 109.47704 * 59.99556 * 1 2 3
22 22 H 1.09001 * 109.47485 * 180.02562 * 1 2 3
23 23 H 1.08998 * 109.47123 * 179.97438 * 3 2 1
24 24 H 1.08995 * 109.47210 * 300.00746 * 3 2 1
25 25 H 1.09006 * 109.46646 * 60.00028 * 3 2 1
26 26 H 1.09000 * 109.46946 * 299.99810 * 4 2 1
27 27 H 1.09003 * 109.47331 * 59.99540 * 4 2 1
28 28 H 1.08998 * 109.47080 * 180.02562 * 4 2 1
29 29 H 1.09008 * 109.46852 * 300.00066 * 5 2 1
30 30 H 1.08998 * 109.47451 * 180.02562 * 5 2 1
31 31 H 1.09008 * 109.47027 * 60.00418 * 6 5 2
32 32 H 1.08998 * 109.47264 * 300.00461 * 6 5 2
33 33 H 0.96997 * 120.00039 * 0.02562 * 7 6 5
34 34 H 1.07997 * 120.45053 * 0.02562 * 9 8 7
35 35 H 1.07999 * 120.74850 * 180.02562 * 10 9 8
36 36 H 1.09000 * 109.47318 * 304.99451 * 12 11 10
37 37 H 0.96695 * 114.00385 * 59.99326 * 13 12 11
38 38 H 1.07997 * 119.57222 * 179.72558 * 18 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 14 1.8630 0.0000 0.0000
3 6 2.4840 1.7565 0.0000
4 6 2.4840 -0.8781 -1.5212
5 6 2.4840 -0.8782 1.5211
6 6 1.9740 -2.3207 1.5211
7 7 2.4619 -3.0111 2.7175
8 6 2.1264 -4.3421 2.9373
9 6 1.3276 -5.0126 2.0169
10 6 1.0009 -6.3368 2.2484
11 6 1.4865 -6.9481 3.3965
12 6 1.1567 -8.3892 3.6891
13 8 1.7465 -9.2249 2.6913
14 14 1.8289 -8.8524 5.3637
15 1 1.2159 -7.9839 6.4007
16 1 1.5033 -10.2723 5.6524
17 1 3.3026 -8.6702 5.3733
18 6 2.2704 -6.2209 4.2700
19 7 2.5710 -4.9606 4.0205
20 1 -0.3634 0.5139 0.8900
21 1 -0.3634 0.5139 -0.8899
22 1 -0.3634 -1.0276 0.0005
23 1 3.5740 1.7565 0.0005
24 1 2.1206 2.2704 -0.8899
25 1 2.1206 2.2703 0.8901
26 1 2.1207 -1.9058 -1.5212
27 1 2.1206 -0.3643 -2.4112
28 1 3.5740 -0.8785 -1.5209
29 1 2.1207 -0.3644 2.4111
30 1 3.5740 -0.8778 1.5213
31 1 2.3374 -2.8346 0.6311
32 1 0.8840 -2.3207 1.5211
33 1 3.0190 -2.5396 3.3563
34 1 0.9672 -4.5063 1.1337
35 1 0.3828 -6.8830 1.5513
36 1 0.0749 -8.5230 3.6821
37 1 2.7098 -9.1573 2.6407
38 1 2.6465 -6.6912 5.1665
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_27_9475734_13915762.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 08:42:46
Heat of formation + Delta-G solvation = -38.833459 kcal
Electronic energy + Delta-G solvation = -16461.331627 eV
Core-core repulsion = 13848.032329 eV
Total energy + Delta-G solvation = -2613.299298 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 254.132 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.36138 -38.18298 -36.89795 -33.54790 -32.50649 -30.27543 -29.20531 -28.30001
-28.27828 -26.19709 -24.97047 -23.40123 -22.24661 -18.71580 -18.51242 -17.50786
-16.60752 -16.30179 -15.97203 -15.70235 -15.44540 -14.83974 -14.71915 -14.13207
-14.02209 -13.86216 -13.85420 -13.71537 -13.37273 -13.18288 -13.12292 -12.97164
-12.76508 -12.55950 -12.36137 -12.16110 -11.93312 -11.10204 -10.76757 -10.73868
-10.69578 -10.66301 -10.40196 -10.33298 -8.66435 0.22531 0.42118 1.22028
1.46929 1.53764 1.75824 1.93442 1.99621 2.04545 2.37848 2.77422
2.84074 3.57496 3.61467 3.82224 4.02391 4.10276 4.16218 4.26559
4.40847 4.60133 4.66103 4.79269 4.83078 4.83332 4.87821 4.88150
4.89599 4.90700 5.01753 5.05127 5.28610 5.34009 5.57038 5.61148
5.68070 5.70342 6.06741 6.57505 6.73899 7.15645
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.470 4.470
2 Si 1.107 2.893
3 C -0.472 4.472
4 C -0.470 4.470
5 C -0.438 4.438
6 C 0.128 3.872
7 N -0.723 5.723
8 C 0.387 3.613
9 C -0.244 4.244
10 C -0.007 4.007
11 C -0.239 4.239
12 C -0.058 4.058
13 O -0.553 6.553
14 Si 0.973 3.027
15 H -0.261 1.261
16 H -0.271 1.271
17 H -0.254 1.254
18 C 0.132 3.868
19 N -0.571 5.571
20 H 0.066 0.934
21 H 0.067 0.933
22 H 0.072 0.928
23 H 0.067 0.933
24 H 0.067 0.933
25 H 0.067 0.933
26 H 0.072 0.928
27 H 0.067 0.933
28 H 0.066 0.934
29 H 0.085 0.915
30 H 0.085 0.915
31 H 0.073 0.927
32 H 0.073 0.927
33 H 0.404 0.596
34 H 0.153 0.847
35 H 0.153 0.847
36 H 0.125 0.875
37 H 0.387 0.613
38 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.715 2.175 -2.491 3.383
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.576 4.576
2 Si 1.296 2.704
3 C -0.578 4.578
4 C -0.576 4.576
5 C -0.521 4.521
6 C 0.005 3.995
7 N -0.355 5.355
8 C 0.151 3.849
9 C -0.269 4.269
10 C -0.033 4.033
11 C -0.244 4.244
12 C -0.170 4.170
13 O -0.360 6.360
14 Si 0.798 3.202
15 H -0.185 1.185
16 H -0.196 1.196
17 H -0.178 1.178
18 C -0.025 4.025
19 N -0.289 5.289
20 H 0.086 0.914
21 H 0.086 0.914
22 H 0.091 0.909
23 H 0.086 0.914
24 H 0.087 0.913
25 H 0.086 0.914
26 H 0.091 0.909
27 H 0.086 0.914
28 H 0.086 0.914
29 H 0.104 0.896
30 H 0.104 0.896
31 H 0.091 0.909
32 H 0.091 0.909
33 H 0.239 0.761
34 H 0.170 0.830
35 H 0.171 0.829
36 H 0.143 0.857
37 H 0.236 0.764
38 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges -0.551 2.364 -1.377 2.791
hybrid contribution 0.237 0.163 -0.410 0.501
sum -0.313 2.527 -1.787 3.111
Atomic orbital electron populations
1.26395 1.22244 1.04644 1.04362 0.77703 0.64787 0.64398 0.63503
1.26387 1.06396 1.20623 1.04376 1.26394 1.06347 1.08576 1.16325
1.26706 1.06991 1.00310 1.18062 1.21364 0.99343 0.92233 0.86563
1.44988 1.56279 1.07496 1.26764 1.18794 0.89907 0.86781 0.89417
1.21712 1.05740 0.96572 1.02863 1.21448 0.93905 0.93025 0.94883
1.21051 1.05629 0.98837 0.98921 1.24690 1.03627 0.86315 1.02381
1.86470 1.26643 1.64613 1.58249 0.85361 0.80125 0.79432 0.75271
1.18504 1.19566 1.17836 1.22443 0.93148 0.88953 0.97941 1.67135
1.28223 1.12056 1.21529 0.91448 0.91360 0.90917 0.91378 0.91349
0.91385 0.90925 0.91361 0.91443 0.89580 0.89574 0.90880 0.90880
0.76074 0.82970 0.82902 0.85686 0.76397 0.82935
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.47 2.80 8.65 113.37 0.98 3.78 16
2 Si 1.11 -9.68 12.19 68.60 0.84 -8.85 16
3 C -0.47 2.37 8.65 113.37 0.98 3.35 16
4 C -0.47 2.80 8.65 113.37 0.98 3.78 16
5 C -0.44 3.03 4.56 71.98 0.33 3.36 16
6 C 0.13 -0.54 4.26 86.38 0.37 -0.17 16
7 N -0.72 -0.97 5.73 -345.09 -1.98 -2.95 16
8 C 0.39 2.12 7.65 133.05 1.02 3.14 16
9 C -0.24 -0.50 9.33 22.50 0.21 -0.29 16
10 C -0.01 -0.01 9.83 22.44 0.22 0.21 16
11 C -0.24 -0.56 5.36 -19.76 -0.11 -0.66 16
12 C -0.06 0.04 2.82 71.24 0.20 0.24 16
13 O -0.55 -0.25 12.84 -148.98 -1.91 -2.16 16
14 Si 0.97 -0.24 25.16 68.60 1.73 1.49 16
15 H -0.26 -0.40 7.11 99.48 0.71 0.31 16
16 H -0.27 -0.73 7.11 99.48 0.71 -0.02 16
17 H -0.25 -0.04 7.05 99.48 0.70 0.66 16
18 C 0.13 0.71 9.84 84.64 0.83 1.55 16
19 N -0.57 -4.92 10.39 -193.26 -2.01 -6.93 16
20 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16
21 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16
22 H 0.07 -0.46 7.79 -2.39 -0.02 -0.48 16
23 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16
24 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16
25 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16
26 H 0.07 -0.46 7.79 -2.39 -0.02 -0.48 16
27 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16
28 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16
29 H 0.09 -0.58 7.96 -2.38 -0.02 -0.60 16
30 H 0.09 -0.58 7.96 -2.39 -0.02 -0.60 16
31 H 0.07 -0.42 7.58 -2.38 -0.02 -0.44 16
32 H 0.07 -0.42 7.58 -2.39 -0.02 -0.44 16
33 H 0.40 0.45 8.60 -92.71 -0.80 -0.35 16
34 H 0.15 -0.42 6.71 -2.91 -0.02 -0.44 16
35 H 0.15 -0.35 8.06 -2.91 -0.02 -0.38 16
36 H 0.13 -0.34 7.96 -2.39 -0.02 -0.36 16
37 H 0.39 -2.05 8.70 -74.06 -0.64 -2.70 16
38 H 0.15 0.40 4.87 -2.91 -0.01 0.38 16
Total: 0.00 -12.52 314.49 3.03 -9.49
By element:
Atomic # 1 Polarization: -8.72 SS G_CDS: 0.35 Total: -8.37 kcal
Atomic # 6 Polarization: 12.26 SS G_CDS: 6.02 Total: 18.27 kcal
Atomic # 7 Polarization: -5.89 SS G_CDS: -3.99 Total: -9.88 kcal
Atomic # 8 Polarization: -0.25 SS G_CDS: -1.91 Total: -2.16 kcal
Atomic # 14 Polarization: -9.92 SS G_CDS: 2.56 Total: -7.36 kcal
Total: -12.52 3.03 -9.49 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_27_9475734_13915762.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.346 kcal
(2) G-P(sol) polarization free energy of solvation -12.520 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.866 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.487 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.833 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds