Wall clock time and date at job start Mon Mar 8 2021 09:55:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.33326 * 125.94855 * 2 1
4 4 C 1.50703 * 122.71162 * 359.97438 * 3 2 1
5 5 O 1.42899 * 109.47357 * 113.56581 * 4 3 2
6 6 Si 1.86298 * 109.47024 * 233.56680 * 4 3 2
7 7 N 1.32117 * 114.57822 * 180.02562 * 3 2 1
8 8 C 1.29686 * 116.87052 * 359.97438 * 7 3 2
9 9 N 1.38606 * 124.95335 * 179.97438 * 8 7 3
10 10 C 1.46500 * 120.00023 * 180.02562 * 9 8 7
11 11 H 1.08995 * 112.85211 * 23.80821 * 10 9 8
12 12 C 1.53785 * 113.61337 * 155.00245 * 10 9 8
13 13 C 1.53774 * 87.08282 * 89.19952 * 12 10 9
14 14 H 1.08997 * 113.61948 * 270.88234 * 13 12 10
15 15 C 1.50700 * 113.61655 * 139.97972 * 13 12 10
16 16 C 1.38222 * 119.96719 * 299.73215 * 15 13 12
17 17 C 1.38299 * 120.01097 * 179.72556 * 16 15 13
18 18 Br 1.89102 * 120.02108 * 180.26885 * 17 16 15
19 19 C 1.38525 * 119.95576 * 0.54239 * 17 16 15
20 20 F 1.35098 * 120.02665 * 179.74981 * 19 17 16
21 21 C 1.38454 * 119.94254 * 359.72742 * 19 17 16
22 22 C 1.38192 * 119.98234 * 0.02562 * 21 19 17
23 23 C 1.53775 * 113.69075 * 252.53725 * 10 9 8
24 24 S 1.70970 * 110.09644 * 0.24880 * 8 7 3
25 25 H 1.09001 * 109.47208 * 84.88176 * 1 2 3
26 26 H 1.09003 * 109.46759 * 204.87890 * 1 2 3
27 27 H 1.08996 * 109.47421 * 324.87538 * 1 2 3
28 28 H 1.08997 * 109.47137 * 353.56604 * 4 3 2
29 29 H 0.96705 * 113.99650 * 59.99644 * 5 4 3
30 30 H 1.48506 * 109.99835 * 179.97438 * 6 4 3
31 31 H 1.48497 * 110.00528 * 301.31665 * 6 4 3
32 32 H 0.96999 * 119.99738 * 0.02562 * 9 8 7
33 33 H 1.09002 * 113.61620 * 334.64909 * 12 10 9
34 34 H 1.09003 * 113.69019 * 203.76055 * 12 10 9
35 35 H 1.07998 * 119.99186 * 359.97438 * 16 15 13
36 36 H 1.07997 * 120.00647 * 180.02562 * 21 19 17
37 37 H 1.08000 * 119.97637 * 180.02562 * 22 21 19
38 38 H 1.09003 * 113.61362 * 156.33076 * 23 10 9
39 39 H 1.08998 * 113.61778 * 25.41767 * 23 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2897 1.0793 0.0000
4 6 1.7413 2.4830 -0.0006
5 8 2.0692 3.1231 1.2343
6 14 2.4875 3.4406 -1.4137
7 7 3.5850 0.8189 -0.0005
8 6 3.9316 -0.4308 -0.0005
9 7 5.2385 -0.8924 -0.0015
10 6 5.5066 -2.3327 -0.0019
11 1 4.6804 -2.9170 -0.4068
12 6 6.8745 -2.7044 -0.5984
13 6 7.4479 -2.5462 0.8197
14 1 7.7797 -1.5329 1.0460
15 6 8.4722 -3.5923 1.1769
16 6 8.1221 -4.9294 1.1776
17 6 9.0629 -5.8906 1.4998
18 35 8.5863 -7.7205 1.4934
19 6 10.3530 -5.5115 1.8327
20 9 11.2718 -6.4489 2.1526
21 6 10.7001 -4.1712 1.8369
22 6 9.7595 -3.2132 1.5095
23 6 6.0362 -2.8629 1.3409
24 16 2.5414 -1.4260 -0.0066
25 1 -0.3634 0.0917 -1.0236
26 1 -0.3633 -0.9323 0.4324
27 1 -0.3634 0.8405 0.5912
28 1 0.6580 2.4498 -0.1161
29 1 3.0191 3.1879 1.4036
30 1 1.9542 4.8266 -1.4256
31 1 3.9666 3.4663 -1.2851
32 1 5.9755 -0.2618 -0.0019
33 1 7.2556 -1.9700 -1.3080
34 1 6.9240 -3.7250 -0.9780
35 1 7.1148 -5.2239 0.9226
36 1 11.7057 -3.8745 2.0958
37 1 10.0305 -2.1677 1.5124
38 1 5.8552 -3.9272 1.4921
39 1 5.7406 -2.2565 2.1970
There are 58 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 58
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_27_9650942_15704122.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 09:55:32
Heat of formation + Delta-G solvation = 30.341711 kcal
Electronic energy + Delta-G solvation = -25373.674597 eV
Core-core repulsion = 21371.256010 eV
Total energy + Delta-G solvation = -4002.418588 eV
No. of doubly occupied orbitals = 58
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 399.005 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-50.03936 -41.69191 -40.93157 -39.49662 -37.57625 -35.60725 -33.68033 -33.03448
-31.59723 -30.47991 -28.94351 -27.06498 -26.45028 -25.63199 -24.54284 -24.12454
-22.94448 -20.93921 -20.46664 -18.96891 -18.88117 -18.00083 -17.91437 -17.61707
-16.89393 -16.82102 -16.69760 -16.27416 -15.77981 -15.67982 -15.43558 -15.17559
-14.83792 -14.65249 -14.27494 -14.16987 -14.15763 -14.06477 -13.81798 -13.71641
-13.57357 -13.45567 -12.88555 -12.58665 -12.41601 -12.23166 -12.19996 -11.80454
-11.75539 -11.58240 -11.38372 -11.12250 -10.65802 -10.43038 -10.14767 -10.01242
-9.71043 -8.67712 -4.86406 -0.29439 -0.14773 -0.00938 0.15759 0.39864
0.76057 1.33450 1.75334 1.80760 1.86731 2.14165 2.18659 2.93393
3.06997 3.26562 3.30434 3.36939 3.43436 3.56959 3.63070 3.78757
3.83913 3.98412 4.02569 4.11459 4.20146 4.31711 4.40063 4.45678
4.47235 4.61781 4.64194 4.66050 4.66836 4.74067 4.79257 4.88138
4.91278 4.95157 5.19098 5.21311 5.47719 5.56455 6.20470 6.44682
6.91095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C -0.241 4.241
3 C 0.074 3.926
4 C -0.036 4.036
5 O -0.526 6.526
6 Si 0.698 3.302
7 N -0.547 5.547
8 C 0.320 3.680
9 N -0.677 5.677
10 C 0.126 3.874
11 H 0.099 0.901
12 C -0.133 4.133
13 C -0.071 4.071
14 H 0.105 0.895
15 C -0.077 4.077
16 C -0.061 4.061
17 C -0.129 4.129
18 Br -0.025 7.025
19 C 0.124 3.876
20 F -0.123 7.123
21 C -0.144 4.144
22 C -0.070 4.070
23 C -0.150 4.150
24 S 0.108 5.892
25 H 0.077 0.923
26 H 0.068 0.932
27 H 0.079 0.921
28 H 0.122 0.878
29 H 0.380 0.620
30 H -0.257 1.257
31 H -0.252 1.252
32 H 0.413 0.587
33 H 0.084 0.916
34 H 0.104 0.896
35 H 0.143 0.857
36 H 0.146 0.854
37 H 0.140 0.860
38 H 0.100 0.900
39 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.879 -0.713 -2.749 2.973
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.364 4.364
3 C -0.057 4.057
4 C -0.149 4.149
5 O -0.332 6.332
6 Si 0.597 3.403
7 N -0.273 5.273
8 C -0.052 4.052
9 N -0.317 5.317
10 C 0.020 3.980
11 H 0.117 0.883
12 C -0.171 4.171
13 C -0.089 4.089
14 H 0.123 0.877
15 C -0.078 4.078
16 C -0.081 4.081
17 C -0.209 4.209
18 Br 0.060 6.940
19 C 0.103 3.897
20 F -0.101 7.101
21 C -0.163 4.163
22 C -0.088 4.088
23 C -0.189 4.189
24 S 0.357 5.643
25 H 0.096 0.904
26 H 0.087 0.913
27 H 0.098 0.902
28 H 0.140 0.860
29 H 0.228 0.772
30 H -0.182 1.182
31 H -0.176 1.176
32 H 0.251 0.749
33 H 0.103 0.897
34 H 0.122 0.878
35 H 0.161 0.839
36 H 0.164 0.836
37 H 0.158 0.842
38 H 0.118 0.882
39 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -0.908 -1.583 -2.939 3.460
hybrid contribution 1.157 1.199 1.245 2.080
sum 0.249 -0.384 -1.694 1.755
Atomic orbital electron populations
1.20213 0.86749 1.03303 1.02975 1.25130 1.01172 0.93109 1.16969
1.19977 0.86741 0.97089 1.01860 1.24631 1.04520 0.89872 0.95832
1.86570 1.29633 1.79798 1.37199 0.94761 0.81159 0.79966 0.84400
1.66028 1.17450 1.16820 1.26971 1.23227 0.91651 0.91588 0.98699
1.43539 1.01881 1.06049 1.80266 1.21945 0.98565 0.79990 0.97539
0.88267 1.23454 0.93768 1.03750 0.96146 1.21588 0.92762 0.97796
0.96781 0.87693 1.19716 0.94759 0.93454 0.99886 1.20872 0.98890
0.91181 0.97150 1.21981 0.95305 0.93249 1.10373 1.96839 1.92581
1.06826 1.97711 1.17442 0.85636 0.86717 0.99945 1.91583 1.64743
1.64051 1.89752 1.21214 1.01863 0.90322 1.02904 1.21096 0.91908
1.00008 0.95821 1.23718 0.94470 1.02688 0.98033 1.83943 0.96365
1.10160 1.73829 0.90431 0.91271 0.90200 0.86033 0.77219 1.18187
1.17559 0.74907 0.89750 0.87783 0.83886 0.83578 0.84206 0.88191
0.89973
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 0.10 9.71 36.01 0.35 0.45 16
2 C -0.24 -0.22 6.57 -36.02 -0.24 -0.46 16
3 C 0.07 0.14 5.19 -84.18 -0.44 -0.29 16
4 C -0.04 -0.04 2.84 36.01 0.10 0.06 16
5 O -0.53 -1.50 12.88 -35.23 -0.45 -1.95 16
6 Si 0.70 0.51 32.62 -169.99 -5.54 -5.04 16
7 N -0.55 -1.38 9.77 -11.36 -0.11 -1.50 16
8 C 0.32 0.27 8.24 -87.69 -0.72 -0.45 16
9 N -0.68 1.14 5.42 -54.99 -0.30 0.84 16
10 C 0.13 -0.44 4.31 -67.12 -0.29 -0.73 16
11 H 0.10 -0.35 7.05 -51.93 -0.37 -0.72 16
12 C -0.13 0.59 7.29 -25.92 -0.19 0.40 16
13 C -0.07 0.29 3.86 -90.96 -0.35 -0.06 16
14 H 0.10 -0.48 8.09 -51.93 -0.42 -0.90 16
15 C -0.08 0.19 5.29 -104.62 -0.55 -0.36 16
16 C -0.06 0.10 8.36 -39.56 -0.33 -0.23 16
17 C -0.13 -0.06 6.23 -39.45 -0.25 -0.31 16
18 Br -0.03 -0.03 33.28 -68.01 -2.26 -2.29 16
19 C 0.12 0.12 7.27 -39.40 -0.29 -0.16 16
20 F -0.12 -0.32 16.73 2.25 0.04 -0.28 16
21 C -0.14 0.15 10.03 -39.52 -0.40 -0.24 16
22 C -0.07 0.17 9.71 -39.59 -0.38 -0.22 16
23 C -0.15 0.55 7.25 -25.92 -0.19 0.36 16
24 S 0.11 0.00 21.68 -107.50 -2.33 -2.33 16
25 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16
26 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16
27 H 0.08 -0.12 7.17 -51.93 -0.37 -0.49 16
28 H 0.12 -0.06 6.33 -51.93 -0.33 -0.39 16
29 H 0.38 0.41 8.70 45.56 0.40 0.81 16
30 H -0.26 -0.81 7.11 56.52 0.40 -0.41 16
31 H -0.25 -0.94 7.11 56.52 0.40 -0.54 16
32 H 0.41 -0.95 8.83 -40.82 -0.36 -1.31 16
33 H 0.08 -0.36 8.14 -51.93 -0.42 -0.79 16
34 H 0.10 -0.49 7.73 -51.93 -0.40 -0.89 16
35 H 0.14 -0.46 6.64 -52.49 -0.35 -0.81 16
36 H 0.15 -0.39 8.06 -52.49 -0.42 -0.81 16
37 H 0.14 -0.63 8.05 -52.49 -0.42 -1.05 16
38 H 0.10 -0.43 6.29 -51.93 -0.33 -0.75 16
39 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16
LS Contribution 364.27 15.07 5.49 5.49
Total: 0.00 -6.27 364.27 -13.90 -20.17
By element:
Atomic # 1 Polarization: -6.60 SS G_CDS: -4.26 Total: -10.86 kcal
Atomic # 6 Polarization: 1.91 SS G_CDS: -4.16 Total: -2.25 kcal
Atomic # 7 Polarization: -0.24 SS G_CDS: -0.41 Total: -0.65 kcal
Atomic # 8 Polarization: -1.50 SS G_CDS: -0.45 Total: -1.95 kcal
Atomic # 9 Polarization: -0.32 SS G_CDS: 0.04 Total: -0.28 kcal
Atomic # 14 Polarization: 0.51 SS G_CDS: -5.54 Total: -5.04 kcal
Atomic # 16 Polarization: 0.00 SS G_CDS: -2.33 Total: -2.33 kcal
Atomic # 35 Polarization: -0.03 SS G_CDS: -2.26 Total: -2.29 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -6.27 -13.90 -20.17 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_27_9650942_15704122.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.509 kcal
(2) G-P(sol) polarization free energy of solvation -6.271 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.238 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.896 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.167 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.342 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds