Wall clock time and date at job start Mon Mar 8 2021 09:55:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.33326 * 125.94855 * 2 1
4 4 C 1.50703 * 122.71162 * 359.97438 * 3 2 1
5 5 O 1.42899 * 109.47357 * 113.56581 * 4 3 2
6 6 Si 1.86298 * 109.47024 * 233.56680 * 4 3 2
7 7 N 1.32117 * 114.57822 * 180.02562 * 3 2 1
8 8 C 1.29686 * 116.87052 * 359.97438 * 7 3 2
9 9 N 1.38606 * 124.95335 * 179.97438 * 8 7 3
10 10 C 1.46500 * 120.00023 * 180.02562 * 9 8 7
11 11 H 1.08995 * 112.85211 * 23.80821 * 10 9 8
12 12 C 1.53785 * 113.61337 * 155.00245 * 10 9 8
13 13 C 1.53774 * 87.08282 * 89.19952 * 12 10 9
14 14 H 1.08997 * 113.61948 * 270.88234 * 13 12 10
15 15 C 1.50700 * 113.61655 * 139.97972 * 13 12 10
16 16 C 1.38222 * 119.96719 * 299.73215 * 15 13 12
17 17 C 1.38299 * 120.01097 * 179.72556 * 16 15 13
18 18 Br 1.89102 * 120.02108 * 180.26885 * 17 16 15
19 19 C 1.38525 * 119.95576 * 0.54239 * 17 16 15
20 20 F 1.35098 * 120.02665 * 179.74981 * 19 17 16
21 21 C 1.38454 * 119.94254 * 359.72742 * 19 17 16
22 22 C 1.38192 * 119.98234 * 0.02562 * 21 19 17
23 23 C 1.53775 * 113.69075 * 252.53725 * 10 9 8
24 24 S 1.70970 * 110.09644 * 0.24880 * 8 7 3
25 25 H 1.09001 * 109.47208 * 84.88176 * 1 2 3
26 26 H 1.09003 * 109.46759 * 204.87890 * 1 2 3
27 27 H 1.08996 * 109.47421 * 324.87538 * 1 2 3
28 28 H 1.08997 * 109.47137 * 353.56604 * 4 3 2
29 29 H 0.96705 * 113.99650 * 59.99644 * 5 4 3
30 30 H 1.48506 * 109.99835 * 179.97438 * 6 4 3
31 31 H 1.48497 * 110.00528 * 301.31665 * 6 4 3
32 32 H 0.96999 * 119.99738 * 0.02562 * 9 8 7
33 33 H 1.09002 * 113.61620 * 334.64909 * 12 10 9
34 34 H 1.09003 * 113.69019 * 203.76055 * 12 10 9
35 35 H 1.07998 * 119.99186 * 359.97438 * 16 15 13
36 36 H 1.07997 * 120.00647 * 180.02562 * 21 19 17
37 37 H 1.08000 * 119.97637 * 180.02562 * 22 21 19
38 38 H 1.09003 * 113.61362 * 156.33076 * 23 10 9
39 39 H 1.08998 * 113.61778 * 25.41767 * 23 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2897 1.0793 0.0000
4 6 1.7413 2.4830 -0.0006
5 8 2.0692 3.1231 1.2343
6 14 2.4875 3.4406 -1.4137
7 7 3.5850 0.8189 -0.0005
8 6 3.9316 -0.4308 -0.0005
9 7 5.2385 -0.8924 -0.0015
10 6 5.5066 -2.3327 -0.0019
11 1 4.6804 -2.9170 -0.4068
12 6 6.8745 -2.7044 -0.5984
13 6 7.4479 -2.5462 0.8197
14 1 7.7797 -1.5329 1.0460
15 6 8.4722 -3.5923 1.1769
16 6 8.1221 -4.9294 1.1776
17 6 9.0629 -5.8906 1.4998
18 35 8.5863 -7.7205 1.4934
19 6 10.3530 -5.5115 1.8327
20 9 11.2718 -6.4489 2.1526
21 6 10.7001 -4.1712 1.8369
22 6 9.7595 -3.2132 1.5095
23 6 6.0362 -2.8629 1.3409
24 16 2.5414 -1.4260 -0.0066
25 1 -0.3634 0.0917 -1.0236
26 1 -0.3633 -0.9323 0.4324
27 1 -0.3634 0.8405 0.5912
28 1 0.6580 2.4498 -0.1161
29 1 3.0191 3.1879 1.4036
30 1 1.9542 4.8266 -1.4256
31 1 3.9666 3.4663 -1.2851
32 1 5.9755 -0.2618 -0.0019
33 1 7.2556 -1.9700 -1.3080
34 1 6.9240 -3.7250 -0.9780
35 1 7.1148 -5.2239 0.9226
36 1 11.7057 -3.8745 2.0958
37 1 10.0305 -2.1677 1.5124
38 1 5.8552 -3.9272 1.4921
39 1 5.7406 -2.2565 2.1970
There are 58 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 58
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_27_9650942_15704122.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 09:55:31
Heat of formation + Delta-G solvation = 36.857630 kcal
Electronic energy + Delta-G solvation = -25373.392046 eV
Core-core repulsion = 21371.256010 eV
Total energy + Delta-G solvation = -4002.136036 eV
No. of doubly occupied orbitals = 58
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 399.005 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-50.09912 -41.49578 -40.92289 -39.34489 -37.67939 -35.52013 -33.60702 -32.95132
-31.46701 -30.41565 -28.94680 -26.75628 -26.30214 -25.57640 -24.49360 -24.01483
-22.80552 -20.82343 -20.37217 -18.90175 -18.82247 -18.06615 -17.85592 -17.55105
-16.87436 -16.77045 -16.52511 -16.25484 -15.77270 -15.57818 -15.47309 -15.04503
-14.68005 -14.50791 -14.22482 -14.15556 -14.03880 -13.96000 -13.83329 -13.50322
-13.45698 -13.32967 -12.94070 -12.47262 -12.36165 -12.16645 -12.03314 -11.85241
-11.64045 -11.42906 -11.32188 -11.05034 -10.66514 -10.47595 -10.04924 -10.01719
-9.62669 -8.62153 -4.95517 -0.20205 -0.02070 -0.00641 0.18540 0.42299
0.76030 1.26556 1.68931 1.78542 1.89202 2.08269 2.28075 3.01063
3.32131 3.33956 3.51659 3.55239 3.60121 3.64217 3.85937 4.00392
4.05107 4.06768 4.19683 4.25671 4.34546 4.50627 4.52307 4.70953
4.74658 4.79213 4.82869 4.83596 4.92760 4.94182 5.00751 5.01889
5.02364 5.16449 5.31361 5.39881 5.61956 5.72982 6.32483 6.36010
6.92783
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C -0.249 4.249
3 C 0.057 3.943
4 C -0.043 4.043
5 O -0.542 6.542
6 Si 0.775 3.225
7 N -0.575 5.575
8 C 0.309 3.691
9 N -0.671 5.671
10 C 0.123 3.877
11 H 0.102 0.898
12 C -0.124 4.124
13 C -0.066 4.066
14 H 0.115 0.885
15 C -0.071 4.071
16 C -0.062 4.062
17 C -0.141 4.141
18 Br -0.040 7.040
19 C 0.095 3.905
20 F -0.140 7.140
21 C -0.146 4.146
22 C -0.068 4.068
23 C -0.147 4.147
24 S 0.128 5.872
25 H 0.094 0.906
26 H 0.073 0.927
27 H 0.081 0.919
28 H 0.139 0.861
29 H 0.384 0.616
30 H -0.291 1.291
31 H -0.295 1.295
32 H 0.415 0.585
33 H 0.088 0.912
34 H 0.111 0.889
35 H 0.158 0.842
36 H 0.159 0.841
37 H 0.165 0.835
38 H 0.107 0.893
39 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.501 -0.543 -3.221 3.595
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.373 4.373
3 C -0.073 4.073
4 C -0.155 4.155
5 O -0.350 6.350
6 Si 0.680 3.320
7 N -0.302 5.302
8 C -0.062 4.062
9 N -0.311 5.311
10 C 0.017 3.983
11 H 0.120 0.880
12 C -0.162 4.162
13 C -0.084 4.084
14 H 0.133 0.867
15 C -0.072 4.072
16 C -0.081 4.081
17 C -0.222 4.222
18 Br 0.045 6.955
19 C 0.074 3.926
20 F -0.119 7.119
21 C -0.166 4.166
22 C -0.086 4.086
23 C -0.186 4.186
24 S 0.377 5.623
25 H 0.112 0.888
26 H 0.092 0.908
27 H 0.099 0.901
28 H 0.157 0.843
29 H 0.232 0.768
30 H -0.218 1.218
31 H -0.222 1.222
32 H 0.254 0.746
33 H 0.106 0.894
34 H 0.129 0.871
35 H 0.176 0.824
36 H 0.176 0.824
37 H 0.182 0.818
38 H 0.126 0.874
39 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -1.530 -1.440 -3.413 4.008
hybrid contribution 1.386 1.184 1.404 2.301
sum -0.145 -0.257 -2.009 2.030
Atomic orbital electron populations
1.20314 0.85345 1.03625 1.04106 1.25480 1.02326 0.93279 1.16185
1.20038 0.86876 0.97452 1.02938 1.24828 1.05644 0.89846 0.95181
1.86539 1.30171 1.80096 1.38145 0.93881 0.77392 0.77389 0.83372
1.66031 1.18019 1.17852 1.28291 1.23488 0.92744 0.91545 0.98451
1.43676 1.01147 1.06846 1.79433 1.22052 0.99235 0.79008 0.97957
0.88005 1.23423 0.92707 1.04234 0.95872 1.21615 0.92060 0.97741
0.96979 0.86734 1.19907 0.95108 0.93345 0.98817 1.21074 0.99168
0.91238 0.96666 1.22092 0.95697 0.92889 1.11499 1.96806 1.92563
1.08318 1.97814 1.17782 0.85805 0.87329 1.01687 1.91531 1.65354
1.64788 1.90191 1.21438 1.02871 0.89671 1.02576 1.21424 0.91574
1.00950 0.94633 1.23707 0.94570 1.02941 0.97414 1.83801 0.95578
1.09383 1.73550 0.88795 0.90766 0.90086 0.84339 0.76752 1.21804
1.22187 0.74632 0.89383 0.87082 0.82438 0.82380 0.81767 0.87447
0.91004
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 0.28 9.71 71.24 0.69 0.97 16
2 C -0.25 -0.33 6.57 24.58 0.16 -0.17 16
3 C 0.06 0.22 5.19 41.41 0.21 0.44 16
4 C -0.04 -0.11 2.84 71.24 0.20 0.09 16
5 O -0.54 -3.40 12.88 -148.98 -1.92 -5.32 16
6 Si 0.78 1.65 32.62 68.60 2.24 3.88 16
7 N -0.57 -3.10 9.77 -189.86 -1.85 -4.95 16
8 C 0.31 0.47 8.24 179.32 1.48 1.94 16
9 N -0.67 2.64 5.42 -327.91 -1.78 0.86 16
10 C 0.12 -0.99 4.31 45.52 0.20 -0.80 16
11 H 0.10 -0.84 7.05 -2.39 -0.02 -0.86 16
12 C -0.12 1.29 7.29 31.12 0.23 1.51 16
13 C -0.07 0.63 3.86 -11.01 -0.04 0.59 16
14 H 0.11 -1.27 8.09 -2.39 -0.02 -1.29 16
15 C -0.07 0.45 5.29 -19.86 -0.11 0.34 16
16 C -0.06 0.24 8.36 22.28 0.19 0.42 16
17 C -0.14 -0.19 6.23 22.35 0.14 -0.05 16
18 Br -0.04 -0.13 33.28 -20.37 -0.68 -0.80 16
19 C 0.10 0.26 7.27 22.39 0.16 0.42 16
20 F -0.14 -0.94 16.73 44.97 0.75 -0.19 16
21 C -0.15 0.35 10.03 22.31 0.22 0.57 16
22 C -0.07 0.41 9.71 22.26 0.22 0.63 16
23 C -0.15 1.25 7.25 31.12 0.23 1.47 16
24 S 0.13 -0.08 21.68 -56.49 -1.22 -1.31 16
25 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16
26 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16
27 H 0.08 -0.31 7.17 -2.39 -0.02 -0.33 16
28 H 0.14 -0.21 6.33 -2.39 -0.02 -0.23 16
29 H 0.38 1.27 8.70 -74.05 -0.64 0.62 16
30 H -0.29 -2.16 7.11 99.48 0.71 -1.45 16
31 H -0.30 -2.72 7.11 99.48 0.71 -2.01 16
32 H 0.41 -2.11 8.83 -92.71 -0.82 -2.93 16
33 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16
34 H 0.11 -1.25 7.73 -2.39 -0.02 -1.27 16
35 H 0.16 -1.17 6.64 -2.91 -0.02 -1.19 16
36 H 0.16 -0.88 8.06 -2.91 -0.02 -0.91 16
37 H 0.16 -1.85 8.05 -2.91 -0.02 -1.87 16
38 H 0.11 -1.05 6.29 -2.39 -0.02 -1.07 16
39 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16
Total: 0.00 -16.03 364.27 -0.58 -16.61
By element:
Atomic # 1 Polarization: -16.88 SS G_CDS: -0.29 Total: -17.17 kcal
Atomic # 6 Polarization: 4.21 SS G_CDS: 4.18 Total: 8.39 kcal
Atomic # 7 Polarization: -0.46 SS G_CDS: -3.63 Total: -4.09 kcal
Atomic # 8 Polarization: -3.40 SS G_CDS: -1.92 Total: -5.32 kcal
Atomic # 9 Polarization: -0.94 SS G_CDS: 0.75 Total: -0.19 kcal
Atomic # 14 Polarization: 1.65 SS G_CDS: 2.24 Total: 3.88 kcal
Atomic # 16 Polarization: -0.08 SS G_CDS: -1.22 Total: -1.31 kcal
Atomic # 35 Polarization: -0.13 SS G_CDS: -0.68 Total: -0.80 kcal
Total: -16.03 -0.58 -16.61 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_27_9650942_15704122.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.471 kcal
(2) G-P(sol) polarization free energy of solvation -16.032 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.439 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.582 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.613 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.858 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds