Wall clock time and date at job start Mon Mar 8 2021 10:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86300 * 109.47085 * 2 1 4 4 C 1.86302 * 109.47200 * 240.00258 * 2 1 3 5 5 C 1.86298 * 109.47379 * 119.99954 * 2 1 3 6 6 C 1.53008 * 109.46926 * 59.99797 * 5 2 1 7 7 C 1.52995 * 109.46979 * 179.97438 * 6 5 2 8 8 N 1.46499 * 109.47298 * 179.97438 * 7 6 5 9 9 C 1.39003 * 120.00532 * 180.02562 * 8 7 6 10 10 C 1.39099 * 119.70110 * 0.02562 * 9 8 7 11 11 C 1.38345 * 119.09556 * 180.02562 * 10 9 8 12 12 C 1.38838 * 118.50628 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.33318 * 180.02562 * 12 11 10 14 14 O 1.42898 * 109.47150 * 65.00290 * 13 12 11 15 15 Si 1.86302 * 109.46827 * 184.99853 * 13 12 11 16 16 H 1.48506 * 109.46804 * 180.02562 * 15 13 12 17 17 H 1.48501 * 109.47216 * 300.00146 * 15 13 12 18 18 H 1.48499 * 109.47057 * 60.00655 * 15 13 12 19 19 C 1.38067 * 119.32758 * 0.02562 * 12 11 10 20 20 N 1.31940 * 120.85527 * 0.02562 * 19 12 11 21 21 H 1.09000 * 109.47027 * 300.00426 * 1 2 3 22 22 H 1.09007 * 109.47161 * 60.00070 * 1 2 3 23 23 H 1.08995 * 109.46943 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47276 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.47064 * 299.99989 * 3 2 1 26 26 H 1.09000 * 109.47536 * 59.99886 * 3 2 1 27 27 H 1.09003 * 109.47203 * 300.00033 * 4 2 1 28 28 H 1.08997 * 109.47381 * 59.99691 * 4 2 1 29 29 H 1.09000 * 109.47682 * 179.97438 * 4 2 1 30 30 H 1.08998 * 109.47233 * 300.00358 * 5 2 1 31 31 H 1.09000 * 109.47094 * 179.97438 * 5 2 1 32 32 H 1.08998 * 109.46706 * 60.00238 * 6 5 2 33 33 H 1.08994 * 109.46883 * 300.00504 * 6 5 2 34 34 H 1.09003 * 109.47143 * 60.00113 * 7 6 5 35 35 H 1.08997 * 109.47292 * 300.00595 * 7 6 5 36 36 H 0.97007 * 119.99513 * 0.02562 * 8 7 6 37 37 H 1.07994 * 120.45153 * 0.27264 * 10 9 8 38 38 H 1.08001 * 120.74372 * 180.02562 * 11 10 9 39 39 H 1.09001 * 109.47327 * 305.00071 * 13 12 11 40 40 H 0.96696 * 114.00202 * 180.02562 * 14 13 12 41 41 H 1.07996 * 119.56789 * 179.97438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8782 1.5211 6 6 1.9740 -2.3207 1.5211 7 6 2.4846 -3.0421 2.7700 8 7 1.9957 -4.4232 2.7704 9 6 2.3314 -5.2791 3.8129 10 6 3.1315 -4.8177 4.8530 11 6 3.4584 -5.6804 5.8839 12 6 2.9718 -6.9800 5.8399 13 6 3.3019 -7.9540 6.9414 14 8 2.7134 -7.5071 8.1645 15 14 2.6281 -9.6354 6.5061 16 1 2.9529 -10.5951 7.5919 17 1 1.1543 -9.5515 6.3446 18 1 3.2397 -10.0998 5.2351 19 6 2.1825 -7.3709 4.7767 20 7 1.8876 -6.5267 3.8065 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.5740 1.7565 -0.0005 25 1 2.1206 2.2703 -0.8900 26 1 2.1207 2.2704 0.8900 27 1 2.1207 -1.9059 -1.5212 28 1 2.1207 -0.3644 -2.4111 29 1 3.5740 -0.8778 -1.5215 30 1 2.1207 -0.3644 2.4111 31 1 3.5741 -0.8786 1.5208 32 1 2.3373 -2.8345 0.6311 33 1 0.8841 -2.3207 1.5211 34 1 2.1216 -2.5284 3.6602 35 1 3.5745 -3.0421 2.7695 36 1 1.4377 -4.7403 2.0430 37 1 3.4893 -3.7987 4.8577 38 1 4.0775 -5.3500 6.7049 39 1 4.3837 -8.0155 7.0599 40 1 2.8856 -8.0871 8.9188 41 1 1.8023 -8.3810 4.7383 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9703850_13915762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:12:47 Heat of formation + Delta-G solvation = -48.598608 kcal Electronic energy + Delta-G solvation = -17811.584950 eV Core-core repulsion = 15042.324584 eV Total energy + Delta-G solvation = -2769.260365 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.24102 -38.20043 -37.23121 -34.27641 -33.23145 -31.25581 -29.57056 -28.47822 -28.46663 -27.32655 -25.35947 -24.73989 -22.51725 -22.11094 -18.57751 -18.45594 -17.96798 -16.64156 -16.55886 -16.06072 -15.57457 -15.32196 -15.08089 -14.52801 -14.31849 -14.21345 -14.13724 -14.04048 -13.93838 -13.76072 -13.61851 -13.41031 -13.22028 -13.14115 -13.09796 -12.65002 -12.27711 -12.05004 -11.99663 -11.87668 -11.05385 -10.87862 -10.84559 -10.64169 -10.60110 -10.46406 -10.14595 -8.60426 0.35105 0.53525 1.18705 1.45526 1.53311 1.70630 1.81538 1.82964 1.93836 2.21373 2.58547 2.92249 3.52495 3.67542 3.91100 3.95022 3.97347 4.07835 4.19600 4.21911 4.43903 4.51364 4.54392 4.60775 4.67236 4.68281 4.71156 4.71556 4.72099 4.72434 4.83556 4.86823 5.07473 5.11663 5.26975 5.38905 5.43775 5.50488 5.51299 5.61056 6.08683 6.60597 6.64490 7.26022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.013 2.987 3 C -0.452 4.452 4 C -0.452 4.452 5 C -0.411 4.411 6 C -0.120 4.120 7 C 0.127 3.873 8 N -0.726 5.726 9 C 0.406 3.594 10 C -0.239 4.239 11 C -0.002 4.002 12 C -0.193 4.193 13 C -0.065 4.065 14 O -0.547 6.547 15 Si 0.938 3.062 16 H -0.255 1.255 17 H -0.246 1.246 18 H -0.248 1.248 19 C 0.151 3.849 20 N -0.540 5.540 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.405 0.595 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.074 0.926 40 H 0.379 0.621 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 1.572 0.075 2.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.209 2.791 3 C -0.560 4.560 4 C -0.559 4.559 5 C -0.496 4.496 6 C -0.158 4.158 7 C 0.002 3.998 8 N -0.358 5.358 9 C 0.170 3.830 10 C -0.264 4.264 11 C -0.028 4.028 12 C -0.198 4.198 13 C -0.177 4.177 14 O -0.353 6.353 15 Si 0.761 3.239 16 H -0.179 1.179 17 H -0.169 1.169 18 H -0.171 1.171 19 C -0.007 4.007 20 N -0.257 5.257 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.241 0.759 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.091 0.909 40 H 0.226 0.774 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.027 1.179 -1.204 1.974 hybrid contribution 0.680 0.170 0.911 1.149 sum 1.707 1.349 -0.293 2.195 Atomic orbital electron populations 1.26178 1.20965 1.04383 1.04408 0.79148 0.66921 0.66671 0.66372 1.26147 1.06244 1.19123 1.04440 1.26177 1.06226 1.08045 1.15470 1.26134 1.06094 1.01233 1.16164 1.21387 1.01514 0.95529 0.97393 1.21560 0.98907 0.80163 0.99127 1.44588 1.56680 1.10563 1.23986 1.18405 0.89467 0.87663 0.87463 1.21441 1.06165 1.01967 0.96816 1.21159 0.94239 0.91530 0.95872 1.19909 1.05418 0.96589 0.97876 1.24459 1.00595 1.06329 0.86283 1.86517 1.77240 1.53455 1.18051 0.85873 0.81644 0.75106 0.81320 1.17896 1.16945 1.17137 1.22172 0.91995 0.97901 0.88611 1.67155 1.26997 1.02661 1.28872 0.91297 0.91319 0.91297 0.91283 0.91266 0.91276 0.91297 0.91319 0.91306 0.90255 0.90265 0.90937 0.90928 0.91847 0.91836 0.75918 0.84878 0.84630 0.90852 0.77405 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.89 8.65 101.05 0.87 1.77 16 2 Si 1.01 -3.54 12.19 -169.99 -2.07 -5.61 16 3 C -0.45 0.88 8.65 101.05 0.87 1.76 16 4 C -0.45 0.92 8.65 101.05 0.87 1.79 16 5 C -0.41 1.30 4.45 37.16 0.17 1.47 16 6 C -0.12 0.31 4.70 -26.73 -0.13 0.18 16 7 C 0.13 -0.15 4.89 -4.05 -0.02 -0.17 16 8 N -0.73 -0.67 5.73 -60.43 -0.35 -1.02 16 9 C 0.41 1.32 7.65 -155.02 -1.19 0.13 16 10 C -0.24 -0.49 9.33 -39.22 -0.37 -0.86 16 11 C 0.00 0.00 9.83 -39.32 -0.39 -0.39 16 12 C -0.19 -0.48 5.39 -104.46 -0.56 -1.04 16 13 C -0.07 -0.01 2.81 36.00 0.10 0.09 16 14 O -0.55 -0.32 12.82 -35.23 -0.45 -0.77 16 15 Si 0.94 -0.15 25.16 -169.99 -4.28 -4.43 16 16 H -0.25 0.06 7.11 56.52 0.40 0.46 16 17 H -0.25 -0.32 7.05 56.52 0.40 0.08 16 18 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 19 C 0.15 0.53 9.84 -17.57 -0.17 0.35 16 20 N -0.54 -2.51 10.39 -12.44 -0.13 -2.64 16 21 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 22 H 0.07 -0.11 7.96 -51.92 -0.41 -0.52 16 23 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 24 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 25 H 0.07 -0.11 7.96 -51.92 -0.41 -0.52 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.13 7.79 -51.93 -0.40 -0.54 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.08 -0.25 7.96 -51.93 -0.41 -0.67 16 31 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 32 H 0.07 -0.20 7.79 -51.93 -0.40 -0.61 16 33 H 0.07 -0.20 7.79 -51.93 -0.40 -0.60 16 34 H 0.06 -0.07 7.92 -51.93 -0.41 -0.49 16 35 H 0.06 -0.09 7.93 -51.93 -0.41 -0.50 16 36 H 0.41 0.12 8.60 -40.82 -0.35 -0.23 16 37 H 0.13 0.01 6.71 -52.49 -0.35 -0.34 16 38 H 0.14 0.02 8.06 -52.49 -0.42 -0.40 16 39 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 40 H 0.38 -1.47 8.74 45.56 0.40 -1.08 16 41 H 0.15 0.28 4.87 -52.49 -0.26 0.02 16 LS Contribution 336.03 15.07 5.06 5.06 Total: 0.00 -5.91 336.03 -8.50 -14.42 By element: Atomic # 1 Polarization: -3.73 SS G_CDS: -6.36 Total: -10.09 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 0.07 Total: 5.08 kcal Atomic # 7 Polarization: -3.18 SS G_CDS: -0.48 Total: -3.66 kcal Atomic # 8 Polarization: -0.32 SS G_CDS: -0.45 Total: -0.77 kcal Atomic # 14 Polarization: -3.69 SS G_CDS: -6.35 Total: -10.04 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -5.91 -8.50 -14.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9703850_13915762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.183 kcal (2) G-P(sol) polarization free energy of solvation -5.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds