Wall clock time and date at job start Mon Mar 8 2021 10:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86301 * 109.47008 * 2 1 4 4 C 1.86303 * 109.47166 * 240.00237 * 2 1 3 5 5 C 1.86299 * 109.47482 * 120.00248 * 2 1 3 6 6 C 1.53001 * 109.47090 * 59.99499 * 5 2 1 7 7 C 1.53000 * 109.46886 * 180.02562 * 6 5 2 8 8 N 1.46499 * 109.46840 * 180.02562 * 7 6 5 9 9 C 1.39149 * 119.99974 * 179.97438 * 8 7 6 10 10 C 1.39302 * 119.71938 * 179.97438 * 9 8 7 11 11 F 1.35099 * 120.46725 * 0.02562 * 10 9 8 12 12 C 1.38485 * 119.06119 * 179.97438 * 10 9 8 13 13 C 1.38859 * 118.48232 * 0.02562 * 12 10 9 14 14 C 1.50702 * 120.32738 * 179.97438 * 13 12 10 15 15 O 1.42903 * 109.47088 * 300.00020 * 14 13 12 16 16 Si 1.86295 * 109.47401 * 179.97438 * 14 13 12 17 17 H 1.48505 * 109.47260 * 60.00058 * 16 14 13 18 18 H 1.48497 * 109.47464 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47323 * 300.00415 * 16 14 13 20 20 C 1.38025 * 119.34911 * 359.97438 * 13 12 10 21 21 N 1.31984 * 120.89422 * 359.74492 * 20 13 12 22 22 H 1.09001 * 109.47083 * 299.99634 * 1 2 3 23 23 H 1.08996 * 109.47484 * 60.00133 * 1 2 3 24 24 H 1.09000 * 109.46936 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47148 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47439 * 299.99772 * 3 2 1 27 27 H 1.09001 * 109.46900 * 60.00253 * 3 2 1 28 28 H 1.09004 * 109.46812 * 300.00218 * 4 2 1 29 29 H 1.09004 * 109.47066 * 59.99752 * 4 2 1 30 30 H 1.08992 * 109.47172 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.46605 * 299.99851 * 5 2 1 32 32 H 1.09002 * 109.47329 * 180.02562 * 5 2 1 33 33 H 1.09001 * 109.46652 * 60.00386 * 6 5 2 34 34 H 1.08992 * 109.47514 * 300.00475 * 6 5 2 35 35 H 1.09002 * 109.47398 * 300.00496 * 7 6 5 36 36 H 1.09001 * 109.47194 * 60.00677 * 7 6 5 37 37 H 0.97000 * 120.00420 * 0.02562 * 8 7 6 38 38 H 1.08002 * 120.76026 * 179.97438 * 12 10 9 39 39 H 1.09004 * 109.47141 * 60.00161 * 14 13 12 40 40 H 0.96698 * 114.00062 * 300.00092 * 15 14 13 41 41 H 1.08000 * 119.55792 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8783 1.5211 6 6 1.9740 -2.3207 1.5211 7 6 2.4836 -3.0418 2.7706 8 7 1.9957 -4.4232 2.7703 9 6 2.3321 -5.2800 3.8138 10 6 1.8645 -6.5922 3.8079 11 9 1.0878 -7.0381 2.7964 12 6 2.2080 -7.4334 4.8530 13 6 3.0086 -6.9322 5.8707 14 6 3.4070 -7.8111 7.0283 15 8 2.2345 -8.2636 7.7084 16 14 4.4736 -6.8399 8.2072 17 1 3.7127 -5.6693 8.7134 18 1 4.8667 -7.7060 9.3475 19 1 5.6919 -6.3700 7.5002 20 6 3.4361 -5.6212 5.8118 21 7 3.0980 -4.8430 4.8008 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.5740 1.7565 -0.0005 26 1 2.1207 2.2703 -0.8900 27 1 2.1206 2.2703 0.8900 28 1 2.1206 -1.9058 -1.5212 29 1 2.1206 -0.3643 -2.4112 30 1 3.5739 -0.8778 -1.5214 31 1 2.1208 -0.3644 2.4110 32 1 3.5741 -0.8779 1.5213 33 1 2.3374 -2.8345 0.6310 34 1 0.8841 -2.3208 1.5211 35 1 3.5736 -3.0418 2.7710 36 1 2.1199 -2.5279 3.6604 37 1 1.4389 -4.7408 2.0423 38 1 1.8603 -8.4557 4.8763 39 1 3.9659 -8.6701 6.6568 40 1 1.6877 -7.5509 8.0663 41 1 4.0586 -5.2277 6.6018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9703850_17656566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:35 Heat of formation + Delta-G solvation = -87.384378 kcal Electronic energy + Delta-G solvation = -20151.583558 eV Core-core repulsion = 16911.187340 eV Total energy + Delta-G solvation = -3240.396218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.96415 -41.41614 -38.33592 -37.18757 -34.26341 -33.16517 -31.28196 -29.41246 -28.30954 -28.29335 -27.35903 -25.95543 -24.44970 -22.87058 -22.32213 -19.34801 -18.48358 -18.34442 -17.63816 -17.12301 -16.32817 -16.14603 -15.96612 -15.90816 -15.69449 -14.78312 -14.71565 -14.24584 -14.14620 -14.03739 -13.98146 -13.80000 -13.56499 -13.49993 -13.24076 -13.06919 -12.98156 -12.90215 -12.60289 -12.46764 -12.10486 -11.99948 -11.87655 -11.23653 -10.74869 -10.71833 -10.66678 -10.65048 -10.42797 -10.38102 -8.77203 -0.11825 0.10265 1.19951 1.50879 1.55377 1.88722 1.96021 2.02670 2.05496 2.11468 2.51977 2.75982 3.01561 3.27081 3.48219 3.68234 3.82687 4.00631 4.13920 4.17304 4.35855 4.48457 4.56490 4.73563 4.73790 4.78432 4.82755 4.83959 4.86487 4.87487 4.87930 4.88554 4.97283 5.04906 5.27435 5.36148 5.50494 5.61361 5.67080 5.67896 5.95307 6.18076 6.72687 6.94937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.086 2.914 3 C -0.470 4.470 4 C -0.468 4.468 5 C -0.417 4.417 6 C -0.122 4.122 7 C 0.134 3.866 8 N -0.718 5.718 9 C 0.376 3.624 10 C -0.037 4.037 11 F -0.139 7.139 12 C -0.035 4.035 13 C -0.206 4.206 14 C -0.064 4.064 15 O -0.552 6.552 16 Si 0.975 3.025 17 H -0.248 1.248 18 H -0.271 1.271 19 H -0.253 1.253 20 C 0.134 3.866 21 N -0.532 5.532 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.417 0.583 38 H 0.162 0.838 39 H 0.129 0.871 40 H 0.389 0.611 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.371 1.591 -0.044 1.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.277 2.723 3 C -0.576 4.576 4 C -0.574 4.574 5 C -0.502 4.502 6 C -0.159 4.159 7 C 0.011 3.989 8 N -0.351 5.351 9 C 0.137 3.863 10 C -0.063 4.063 11 F -0.118 7.118 12 C -0.061 4.061 13 C -0.211 4.211 14 C -0.175 4.175 15 O -0.359 6.359 16 Si 0.799 3.201 17 H -0.172 1.172 18 H -0.196 1.196 19 H -0.177 1.177 20 C -0.023 4.023 21 N -0.250 5.250 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.255 0.745 38 H 0.179 0.821 39 H 0.147 0.853 40 H 0.238 0.762 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.459 2.551 0.288 2.953 hybrid contribution -1.107 -0.717 -0.706 1.496 sum 0.353 1.833 -0.419 1.913 Atomic orbital electron populations 1.26372 1.22449 1.04367 1.04151 0.78018 0.64928 0.64619 0.64690 1.26373 1.06353 1.20665 1.04210 1.26375 1.06279 1.08398 1.16301 1.26245 1.06313 1.00920 1.16689 1.21455 1.01797 0.95839 0.96841 1.21472 0.98739 0.79479 0.99221 1.44759 1.55976 1.11640 1.22732 1.18645 0.91272 0.86911 0.89446 1.18146 1.03286 0.93564 0.91311 1.91467 1.72899 1.89427 1.58030 1.21450 0.93992 1.00613 0.90079 1.21011 1.04029 0.96135 0.99949 1.24837 0.93935 1.03698 0.94993 1.86493 1.37172 1.37831 1.74427 0.85320 0.78671 0.78183 0.77919 1.17206 1.19587 1.17697 1.22670 0.95371 0.89814 0.94469 1.67327 1.16535 1.37936 1.03170 0.91438 0.91694 0.91182 0.91384 0.91626 0.91372 0.91184 0.91694 0.91452 0.90157 0.90172 0.90396 0.90378 0.92487 0.92445 0.74525 0.82074 0.85302 0.76153 0.81296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.85 8.65 113.37 0.98 2.83 16 2 Si 1.09 -7.32 12.19 68.60 0.84 -6.49 16 3 C -0.47 1.58 8.65 113.37 0.98 2.56 16 4 C -0.47 1.83 8.65 113.37 0.98 2.81 16 5 C -0.42 2.27 4.45 71.98 0.32 2.59 16 6 C -0.12 0.53 4.70 30.59 0.14 0.68 16 7 C 0.13 0.02 5.70 86.38 0.49 0.52 16 8 N -0.72 -1.42 5.71 -344.82 -1.97 -3.39 16 9 C 0.38 2.02 7.49 133.07 1.00 3.02 16 10 C -0.04 -0.17 7.35 22.58 0.17 -0.01 16 11 F -0.14 -0.78 16.65 44.97 0.75 -0.03 16 12 C -0.04 -0.06 9.75 22.48 0.22 0.16 16 13 C -0.21 -0.02 5.40 -19.77 -0.11 -0.13 16 14 C -0.06 0.19 2.83 71.24 0.20 0.39 16 15 O -0.55 0.85 12.78 -148.98 -1.90 -1.05 16 16 Si 0.98 -3.20 25.10 68.60 1.72 -1.48 16 17 H -0.25 0.81 7.11 99.48 0.71 1.52 16 18 H -0.27 -0.09 7.11 99.48 0.71 0.62 16 19 H -0.25 0.59 7.11 99.48 0.71 1.30 16 20 C 0.13 0.27 9.84 84.62 0.83 1.10 16 21 N -0.53 -3.15 9.57 -193.03 -1.85 -4.99 16 22 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 23 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 24 H 0.07 -0.29 7.79 -2.39 -0.02 -0.31 16 25 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 26 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 27 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 28 H 0.07 -0.29 7.79 -2.39 -0.02 -0.30 16 29 H 0.06 -0.19 7.96 -2.38 -0.02 -0.21 16 30 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 32 H 0.08 -0.42 7.96 -2.39 -0.02 -0.44 16 33 H 0.08 -0.44 7.79 -2.39 -0.02 -0.46 16 34 H 0.08 -0.44 7.79 -2.39 -0.02 -0.46 16 35 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.42 -0.34 7.94 -92.71 -0.74 -1.08 16 38 H 0.16 -0.13 8.06 -2.91 -0.02 -0.15 16 39 H 0.13 -0.64 7.96 -2.38 -0.02 -0.66 16 40 H 0.39 -2.97 8.70 -74.06 -0.64 -3.62 16 41 H 0.17 -0.32 4.88 -2.91 -0.01 -0.33 16 Total: 0.00 -11.32 343.44 4.20 -7.12 By element: Atomic # 1 Polarization: -6.62 SS G_CDS: 0.40 Total: -6.22 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 6.21 Total: 16.52 kcal Atomic # 7 Polarization: -4.56 SS G_CDS: -3.81 Total: -8.38 kcal Atomic # 8 Polarization: 0.85 SS G_CDS: -1.90 Total: -1.05 kcal Atomic # 9 Polarization: -0.78 SS G_CDS: 0.75 Total: -0.03 kcal Atomic # 14 Polarization: -10.53 SS G_CDS: 2.56 Total: -7.97 kcal Total: -11.32 4.20 -7.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9703850_17656566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.261 kcal (2) G-P(sol) polarization free energy of solvation -11.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds