Wall clock time and date at job start Mon Mar 8 2021 10:30:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42899 * 1
3 3 Si 1.86299 * 109.47153 * 2 1
4 4 C 1.50706 * 109.46773 * 240.00223 * 2 1 3
5 5 C 1.33329 * 125.95332 * 300.00053 * 4 2 1
6 6 N 1.32113 * 114.57876 * 180.02562 * 5 4 2
7 7 C 1.29690 * 116.86732 * 359.97438 * 6 5 4
8 8 N 1.38617 * 124.94885 * 179.97438 * 7 6 5
9 9 C 1.46499 * 119.99771 * 0.02700 * 8 7 6
10 10 H 1.09000 * 112.85349 * 23.80717 * 9 8 7
11 11 C 1.53784 * 113.61492 * 155.00082 * 9 8 7
12 12 C 1.53778 * 87.08324 * 89.11091 * 11 9 8
13 13 H 1.08998 * 113.61814 * 270.80424 * 12 11 9
14 14 C 1.50702 * 113.61498 * 139.98081 * 12 11 9
15 15 C 1.38234 * 119.99895 * 301.26209 * 14 12 11
16 16 C 1.38241 * 120.00059 * 180.36621 * 15 14 12
17 17 C 1.38234 * 119.99640 * 359.83734 * 16 15 14
18 18 C 1.50702 * 119.99464 * 180.11158 * 17 16 15
19 19 F 1.39902 * 109.47268 * 270.02001 * 18 17 16
20 20 F 1.39898 * 109.47389 * 30.02883 * 18 17 16
21 21 F 1.39907 * 109.46616 * 150.02290 * 18 17 16
22 22 C 1.38234 * 120.00264 * 0.13873 * 17 16 15
23 23 C 1.38230 * 119.99880 * 359.95214 * 22 17 16
24 24 C 1.53784 * 87.17005 * 25.39533 * 12 11 9
25 25 S 1.70966 * 110.10236 * 0.24767 * 7 6 5
26 26 H 0.96703 * 113.99900 * 299.99770 * 1 2 3
27 27 H 1.08998 * 109.47315 * 120.00460 * 2 1 3
28 28 H 1.48504 * 109.99860 * 178.68318 * 3 2 1
29 29 H 1.48494 * 110.00418 * 300.00230 * 3 2 1
30 30 H 1.07994 * 122.70718 * 0.02562 * 5 4 2
31 31 H 0.97000 * 120.00008 * 180.02562 * 8 7 6
32 32 H 1.09004 * 113.60952 * 334.56762 * 11 9 8
33 33 H 1.08993 * 113.61932 * 203.66413 * 11 9 8
34 34 H 1.08001 * 120.00299 * 0.24986 * 15 14 12
35 35 H 1.07997 * 119.99869 * 179.97438 * 16 15 14
36 36 H 1.08001 * 119.99769 * 179.97438 * 22 17 16
37 37 H 1.08000 * 120.00376 * 180.02562 * 23 22 17
38 38 H 1.08995 * 113.61769 * 89.15400 * 24 12 11
39 39 H 1.09000 * 113.61387 * 220.05915 * 24 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0500 1.7564 0.0000
4 6 1.9313 -0.7104 -1.2306
5 6 1.6833 -1.9788 -1.5582
6 7 2.2383 -2.3724 -2.6907
7 6 2.9428 -1.4942 -3.3344
8 7 3.5969 -1.7258 -4.5344
9 6 3.5195 -3.0444 -5.1681
10 1 2.6375 -3.6086 -4.8651
11 6 3.7357 -3.0099 -6.6903
12 6 5.2369 -3.1776 -6.4018
13 1 5.7642 -2.2329 -6.2689
14 6 5.9354 -4.1080 -7.3596
15 6 5.5130 -5.4186 -7.4820
16 6 6.1586 -6.2742 -8.3550
17 6 7.2244 -5.8183 -9.1081
18 6 7.9265 -6.7504 -10.0616
19 9 8.9745 -7.3956 -9.3963
20 9 7.0185 -7.7031 -10.5361
21 9 8.4384 -6.0176 -11.1379
22 6 7.6464 -4.5076 -8.9861
23 6 7.0021 -3.6526 -8.1117
24 6 4.8300 -3.8474 -5.0787
25 16 2.9537 -0.0114 -2.4834
26 1 -0.3933 0.4417 0.7651
27 1 1.7924 -0.5139 0.8899
28 1 3.5346 1.7702 0.0321
29 1 1.5615 2.4680 -1.2084
30 1 1.0778 -2.6317 -0.9472
31 1 4.1058 -1.0149 -4.9544
32 1 3.4829 -2.0523 -7.1455
33 1 3.2942 -3.8581 -7.2134
34 1 4.6799 -5.7746 -6.8942
35 1 5.8289 -7.2982 -8.4503
36 1 8.4794 -4.1516 -9.5741
37 1 7.3315 -2.6284 -8.0166
38 1 4.6882 -4.9250 -5.1603
39 1 5.4594 -3.5650 -4.2347
There are 61 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 61
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_27_9705040_15704118.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 10:30:46
Heat of formation + Delta-G solvation = -66.917239 kcal
Electronic energy + Delta-G solvation = -27674.873084 eV
Core-core repulsion = 23069.147083 eV
Total energy + Delta-G solvation = -4605.726001 eV
No. of doubly occupied orbitals = 61
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 357.075 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-51.25352 -48.77684 -48.73037 -41.54830 -40.68206 -39.41835 -37.75661 -35.49919
-32.93171 -32.13873 -31.31244 -28.04822 -26.82978 -26.56339 -25.40143 -24.43738
-23.95447 -22.59844 -21.25413 -20.24318 -19.61613 -19.56558 -19.49037 -19.20581
-18.45246 -17.85497 -17.03585 -16.69990 -16.28961 -16.07090 -15.90205 -15.80187
-15.57761 -15.48700 -15.41650 -15.18882 -14.99063 -14.89249 -14.86187 -14.65197
-14.49642 -14.38281 -14.33284 -14.05533 -13.59363 -13.37188 -12.93173 -12.79286
-12.54221 -12.42106 -12.18864 -12.00835 -11.91831 -11.32494 -11.11485 -10.78237
-10.41990 -10.21579 -10.09827 -9.98398 -8.84862 -5.18652 -0.20281 -0.16065
-0.05719 0.23822 0.50447 1.24166 1.57233 1.59438 1.86085 1.92384
2.03100 2.37426 2.66174 2.94320 3.32979 3.35545 3.48594 3.56041
3.62407 3.65023 3.79237 3.85103 3.91039 3.97442 4.15794 4.27532
4.35677 4.48906 4.55163 4.63482 4.64183 4.73027 4.74220 4.81978
4.95208 4.97995 5.01228 5.13562 5.15243 5.22040 5.49782 5.73575
5.78931 6.04309 6.85318 6.92957
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.563 6.563
2 C -0.023 4.023
3 Si 0.754 3.246
4 C -0.274 4.274
5 C 0.110 3.890
6 N -0.569 5.569
7 C 0.329 3.671
8 N -0.666 5.666
9 C 0.132 3.868
10 H 0.094 0.906
11 C -0.125 4.125
12 C -0.071 4.071
13 H 0.113 0.887
14 C -0.038 4.038
15 C -0.119 4.119
16 C -0.076 4.076
17 C -0.202 4.202
18 C 0.506 3.494
19 F -0.184 7.184
20 F -0.182 7.182
21 F -0.182 7.182
22 C -0.077 4.077
23 C -0.120 4.120
24 C -0.140 4.140
25 S 0.055 5.945
26 H 0.405 0.595
27 H 0.106 0.894
28 H -0.273 1.273
29 H -0.286 1.286
30 H 0.189 0.811
31 H 0.424 0.576
32 H 0.086 0.914
33 H 0.108 0.892
34 H 0.153 0.847
35 H 0.143 0.857
36 H 0.142 0.858
37 H 0.153 0.847
38 H 0.103 0.897
39 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.337 4.310 4.536 6.398
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.374 6.374
2 C -0.136 4.136
3 Si 0.659 3.341
4 C -0.396 4.396
5 C -0.040 4.040
6 N -0.295 5.295
7 C -0.041 4.041
8 N -0.305 5.305
9 C 0.024 3.976
10 H 0.112 0.888
11 C -0.163 4.163
12 C -0.089 4.089
13 H 0.131 0.869
14 C -0.038 4.038
15 C -0.137 4.137
16 C -0.094 4.094
17 C -0.204 4.204
18 C 0.452 3.548
19 F -0.166 7.166
20 F -0.163 7.163
21 F -0.163 7.163
22 C -0.095 4.095
23 C -0.137 4.137
24 C -0.179 4.179
25 S 0.303 5.697
26 H 0.257 0.743
27 H 0.123 0.877
28 H -0.199 1.199
29 H -0.213 1.213
30 H 0.205 0.795
31 H 0.263 0.737
32 H 0.104 0.896
33 H 0.126 0.874
34 H 0.171 0.829
35 H 0.160 0.840
36 H 0.160 0.840
37 H 0.171 0.829
38 H 0.122 0.878
39 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -0.364 4.846 3.075 5.751
hybrid contribution 0.084 -1.151 -0.305 1.193
sum -0.280 3.695 2.770 4.627
Atomic orbital electron populations
1.86460 1.17044 1.82345 1.51513 1.23843 0.85719 1.09647 0.94429
0.94172 0.78577 0.75840 0.85539 1.24659 1.12801 0.97891 1.04247
1.21573 0.97102 0.93520 0.91825 1.66466 1.18124 1.33876 1.11013
1.23948 0.94711 0.92867 0.92613 1.43803 1.53702 1.14596 1.18443
1.21973 0.99133 0.82925 0.93534 0.88798 1.23430 0.94151 1.04579
0.94188 1.21700 0.95402 0.98299 0.93547 0.86902 1.20120 0.94310
0.94299 0.95103 1.21245 1.00879 0.92974 0.98602 1.21137 0.93133
1.01222 0.93938 1.20036 1.01921 0.95639 1.02774 1.18517 0.76876
0.79530 0.79850 1.93219 1.59752 1.83080 1.80527 1.93183 1.67107
1.66622 1.89396 1.93184 1.87926 1.77086 1.58142 1.21146 0.99404
0.91421 0.97550 1.21330 0.95688 1.00929 0.95774 1.23628 0.96698
1.00861 0.96737 1.84116 1.52055 1.15202 1.18300 0.74329 0.87668
1.19915 1.21252 0.79466 0.73670 0.89578 0.87353 0.82945 0.83953
0.84009 0.82893 0.87838 0.91492
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.56 0.48 12.84 -148.98 -1.91 -1.43 16
2 C -0.02 0.02 2.98 71.24 0.21 0.23 16
3 Si 0.75 -1.48 31.05 68.60 2.13 0.65 16
4 C -0.27 -1.43 5.78 24.58 0.14 -1.29 16
5 C 0.11 0.70 11.22 83.54 0.94 1.64 16
6 N -0.57 -4.50 9.83 -202.03 -1.99 -6.48 16
7 C 0.33 1.54 8.09 179.32 1.45 2.99 16
8 N -0.67 1.00 5.42 -327.60 -1.77 -0.77 16
9 C 0.13 -0.44 4.45 45.58 0.20 -0.23 16
10 H 0.09 0.04 7.66 -2.39 -0.02 0.03 16
11 C -0.13 0.90 7.29 31.12 0.23 1.12 16
12 C -0.07 0.51 3.85 -11.01 -0.04 0.46 16
13 H 0.11 -1.04 8.09 -2.39 -0.02 -1.06 16
14 C -0.04 0.16 5.29 -19.87 -0.11 0.06 16
15 C -0.12 0.43 8.54 22.27 0.19 0.62 16
16 C -0.08 0.05 9.40 22.27 0.21 0.26 16
17 C -0.20 -0.37 5.45 -19.87 -0.11 -0.47 16
18 C 0.51 2.28 3.36 71.24 0.24 2.52 16
19 F -0.18 -1.20 17.30 44.97 0.78 -0.42 16
20 F -0.18 -1.01 16.46 44.97 0.74 -0.27 16
21 F -0.18 -1.01 16.46 44.97 0.74 -0.27 16
22 C -0.08 0.04 9.40 22.27 0.21 0.25 16
23 C -0.12 0.43 9.71 22.27 0.22 0.64 16
24 C -0.14 0.68 7.27 31.18 0.23 0.91 16
25 S 0.06 0.27 20.57 -56.49 -1.16 -0.90 16
26 H 0.40 -4.75 8.74 -74.06 -0.65 -5.40 16
27 H 0.11 -0.59 7.96 -2.39 -0.02 -0.61 16
28 H -0.27 -0.82 7.11 99.48 0.71 -0.11 16
29 H -0.29 -1.64 7.11 99.48 0.71 -0.93 16
30 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16
31 H 0.42 -2.53 8.83 -92.71 -0.82 -3.35 16
32 H 0.09 -0.67 8.14 -2.38 -0.02 -0.69 16
33 H 0.11 -0.85 7.66 -2.39 -0.02 -0.87 16
34 H 0.15 -1.14 6.73 -2.91 -0.02 -1.16 16
35 H 0.14 -0.36 7.60 -2.91 -0.02 -0.39 16
36 H 0.14 -0.36 7.60 -2.91 -0.02 -0.38 16
37 H 0.15 -1.22 8.05 -2.91 -0.02 -1.24 16
38 H 0.10 -0.61 6.38 -2.39 -0.02 -0.62 16
39 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16
Total: 0.00 -18.05 355.89 1.47 -16.58
By element:
Atomic # 1 Polarization: -16.11 SS G_CDS: -0.29 Total: -16.40 kcal
Atomic # 6 Polarization: 5.50 SS G_CDS: 4.21 Total: 9.71 kcal
Atomic # 7 Polarization: -3.50 SS G_CDS: -3.76 Total: -7.26 kcal
Atomic # 8 Polarization: 0.48 SS G_CDS: -1.91 Total: -1.43 kcal
Atomic # 9 Polarization: -3.21 SS G_CDS: 2.26 Total: -0.95 kcal
Atomic # 14 Polarization: -1.48 SS G_CDS: 2.13 Total: 0.65 kcal
Atomic # 16 Polarization: 0.27 SS G_CDS: -1.16 Total: -0.90 kcal
Total: -18.05 1.47 -16.58 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_27_9705040_15704118.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.333 kcal
(2) G-P(sol) polarization free energy of solvation -18.052 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.385 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.584 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.917 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds